Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                -----                                                                                                <----           <---------ANAC58                   --------->AtLEC2                              <-------- ------------AtSPL8                     <---------ANAC58                                   <---------GLK1(2) -----ARR11(3)                 <---------ANAC58                           <----------DOF2  --------->ARR11(3) ---->ARR11(3)       <---------GLK1(1)  <---------ANAC58          <-----------GT1          <---------ARR11(3) --AGL15   <---------ANAC58    <---------ANAC58                <---------ICU4             <---------RVE1(1)   tagtactgagaatgcgagcctggaaatgccattgcttctcttccgtccatgcattaaaaactccaaaattacaagtctttaacagaaataagagattttt  23545400                                                                         ----------->GT1                                                                     --------->DAG2             ---------->DOF2                                        ---------->DOF2         <---------------AGL15                                    --------------->AGL15        ===========================================================================MADS_MADS        <---------------AGL15                                     <---------------AGL15    <---------WOX13(1)                                   --------->TOE2(3)  --------->ATHB12                                       --------->TOE1(3)  ---------->DOF2    <----- ------AHL20(2)                                   --------->YAB1 ----------------->AG         <------ ---->AHL20(2)            <---------AHL20(2)     <---------ATHB12----------------->AGL1      <------- -----AHL20(2)  ----------->GT1                --------->GLK1(1) ----------------->AGL3      <------- -RVE1(1)--------------->AGL15              --------->LBD16      ----------------->AGL2      <-------   aaattgattaacaaaaaaaggaaacaaatttatctaatctaatacccagaaatcataaaccctaattcccaaaagtagtaaagagaacaacaatggcggt  23545500     <-----------GT1                                                                             <--- --GAMYB                                                                           ----------->GT1 ---MYB46(3)                             --------->At4g35610         --------->TOE2(3)           ---- --DEAR3(1)             ----------->GT1  <---------At4g35610         --------->TOE1(3)   --------->GLK1(2) --ANAC46        ---------->DOF2       <---------ZAT18             ------->TEIL  --------->DAG2  ---- --RAP2.6(2)    --------->YAB1       <-----------HVH21    ---------->ID1        ---------->DOF2  <---   tttaaaattacccagtaatcaaagtcgggttatttatactgtgagctcaaaatccaatttgttcttatgaaccctaaaaaaaaaaagctaaaatctgagt  23545600                      --------->ATHB12                     <---------YAB1                                ------>ZmHOX2a(1)    <---------HSFB2a(2)                                     <---------ANAC58    --------->HSFB2a(2)                                     <---------ANAC58 ------ZAT14      --------->TOE1(2)                        <---------HSFC1(2)                      -- ----->ZAT18    <---------------AtSPL3   <---------TOE2(3) --------->HSFC1(2)    --------->AtLEC2  <- ----->ZAT14    --------->DAG2<---------ARR14(2)     ---------->DOF2      <---------At5g28300     <-- ------ZAT18   ---------->DOF2--------->ARR14(2)    <------ZmHOX2a(1) <---------ZAT6  ----------->GT1   tcacttatagaactcgaaaaagtacgattgcagatttgaaattaagaaaacagaggaaagtagcttctcctactgttacagtcttgcagagaaaaaaatc  23545700     --------------->AGL15     <---------------AGL15   <---------WOX13(1)                                <------ZmHOX2a(1) ------->ARR14(2)          --------->ATHB12                           ------->TEIL    ---------->DOF2 ----------ARR10          <---------YAB1      <---------GLK1(1)     <<<<<<<<<EIN3 <----------ID1    - -------CCA1(2)---------->DOF2       --------->GLK1(1)   <------ZmHOX2a(1)  --------->At4g35610     <   aaatctccccctaagagaaaagctagatttgattgagagaaatctagggtttctgagaaggagaacacaatgtatatcagaggagagacaaaggaagaag  23545800             <---------LBD16            <---------LBD16  *TSS------------>CBF -------->At4g35610          ---------->DOF2 ---------At4g35610   ------------------------>ANAC81   acagatgagacaattcagggagaagaagagaaaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagag  23545900                    <---------YAB1                <---------GLK1(2)               -------->HAHB4               <---------ICU4               <--------ATHB1              <---------YAB1                                             ---------->DOF2              --------->ICU4       <---------YAB1                      ----------->HVH21        -----              <---------ATHB12  --------->AHL20(2)               <----------DOF2                <----             <---------TOE2(3)<----------DOF2 <----------DOF2 <---------ARR11(3)               ------    --------->MYB52(1) <---------WOX13(1) <---------ZAT18     --------->ARR11(3)          ---------->DOF2   agagactaacagtttaatgattctgatttatacttttaatattgtgaacttttgaattgagagaggtctttctctgaaagttagaagaaaactaaagaag  23546000                                                --------->ATHB12                                    <---------ARR11(3)                                    --------->ARR11(3)                                   <---------CCA1(2)       <---------AHL20(2)                               <---------AHL20(2)          --------->AHL20(2)                               --------->AHL20(2)   ----------->GT1                         <---------ANAC58     <---------WOX13(1)           --------->AHL20(2)      -- ---->At4g35610          <---------ANAC46  --------->AHL20(2)           ----------->GT1           <-- -----At4g35610          <---------ANAC58  <---------AHL20(2)        ---------->DOF2           <----- --->GLK1(2)            ---------->ID1   <----------DOF2  --------->AHL20(2)                  <------   ctgaacgagagtgacgaccattgtttttcgtatttatatatctctttaattgatttgttatttaattttgtgaaagataaattcaattgagagaaagatt  23546100        --------->CCA1(2)       <---------ARR11(3)       --------->ARR11(3) <---------YAB1 ------->YAB1                                      <---------TOE2(3)          <---------TOE2(3) -------YAB1                                     <---------AHL20(2)         <---------AHL20(2)      - ----YAB1                  <---------TOE2(3)    --------->AHL20(2)         --------->AHL20(2)    ---- ---GLK1(2)   --------->YAB1             <---------TOE2(3)          <---------TOE2(3)          <-----   attatgaaagatttaagcatagtttgtttaagaatatttgtttaagaatatttaatgtattagtttgtttaagaatatttaatgtattagtttgtttaag  23546200                                                                                                   <-                                                                                                  ---                                                                                                 <---                                                                          <-----------GT1       -----                                                                       <---------ICU4           -----                                                                      <---------YAB1            <----          <---------TOE2(3)                        <------ZmHOX2a(1)  --------->ICU4            <----         ---------->DOF2                       ---------->DOF2      <---------ICU4             <-----        <---------AHL20(2)                   --------->YAB1        <---------YAB1             -------   <---------AHL20(2)                        <---------AHL20(2)    --------->ICU4     <---------ARR11(3) ---------->GT1                           --------->YAB1  <----------DOF2<---------YAB1     <-------- ----->YAB1                              <---------AHL20(2)   <----------DOF2         --------->ARR11(3) ----TOE2(3)               <---------TOE2(3) --------->AHL20(2)  --------->YAB1      <---------CCA1(2)   aatagtttatttaaagtattagtttgtttaagaatatttgtttttaataaaaaggatagactttctttgatgattattacaaatctaatatctcgttaga  23546300  Previous    Next  AGI:  At1g63480.1    Description:  DNA-binding family protein. similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT1G63470.1); similar to DNA-binding PD1-like protein [Pisum sativum] (GB:CAA67291.1); contains InterPro domain Protein of unknown function DUF296 (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding (InterPro:IPR000637) Range:  from: 23543222    to: 23545802    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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