Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     --                                                                                                   --                                                                                                   <-                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                               ------                                                                                               <-----                                                                                               ------                                           <----------DOF2 --------->LBD16                    -------                     --------->YAB1       <---------HSFB2a(1)                                 -------                    <---------YAB1        --------->HSFC1(2)              <---------ALFIN1    <------                ------->GAMYB             --------->HSFB2a(1) <---------DEAR3(2)   <---------GLK1(2)-             ----------->RAV1(1)          <---------HSFC1(2)<---------MYB52(1)   --------->LBD16-----       --------->ANAC46                  ------->TEIL      <-----------HVH21    --------->HSFB2a(2)<- ---ICU4    --------->MYB46(3)   <---------ICU4     <----------DOF2     ------>ZmHOX2a(1)   ------>ZmHOX2a(1)   gtccattacaaacaacaacagcatcataaatctcatcacgacgaactttcttctctttctccgtcgattcaatcctccacttcccgattccttcctccgc  23508600         --------->TOE1(3)  <------NtERF2 --------->LBD16 ------->RAP2.3(1) ------->ATERF1(1) -----NtERF2 -------ATERF1(1) --->NtERF2 ------>ABI4(1) ------ATERF1(2) ----->ATERF1(2) ----->RAP2.3(2) ----->RAP2.3(3) ----->RRTF1(2) ----->DEAR3(1) ------DEAR3(1) ----->RRTF1(3) ---->RRTF1(1) ---->DEAR4(2) ---->RAP2.3(1) ---->RAP2.6(1) ---->ERF1 ---->ATERF1(1) ----ATERF1(1) >NtERF2 --------->TOE2(3) --->LBD16 --->ABI4(1)                               ------>ZmHOX2a(1) ----At4g35610                            --------->TOE2(3)                   --------->ANAC46 --->At4g35610                   ------>MYB83                                 --------->ANAC58 -->DEAR3(1)                     ------>MYB46(1)                              <----------ID1 -->ANAC46                       --------->MYB52(1)                           --------->ANAC58 ---ALFIN1                     <---------MYB59                    --------->ARR11(3) -------->DEAR3(1)--------->TOE2(2) ------->GAMYB                 <---------ARR11(3)<-----------ARR10 ---->ORA47(2)    ------->GAMYB--------->AtMYB61    <---------ALFIN1       --------->ARR14(2)     <-- --------LBD16   --------->MYB46(3)--------->MYB46(3)     ------>ZmHOX2a(1)<---------ARR14(2) -------   cgccggagaaaccttcacaacctccgtctcaaacctaaccatctcctcaatcccaaactccttagcgaaatctttcaaatacgccaaaacttcgccatga  23508700                                                                 --------->ZAT14                                                                 <---------ZAT18                                        --------->ANAC58         <---------ZAT14                                        <---------MYB52(2)       <-------TEIL                                        --------->ANAC58       <---------MYB52(1)               -----                                     --------->MYB46(3)       --------->LBD16                 >>>>>>>                ------>ZmHOX2a(2)--------->ANAC58            --------------->AtSPL8           >>>>>>>          ------>ZmHOX2a(1)      <---------MYB52(2)       --------->ARR14(2)                  >>>>>>>          =============HOX2a_HOX2a  ------->TEIL          <---------ARR14(2)     <---------MYB52(1)    --------->HSFC1(2)       --------->LBD16              ------->TEIL          <-------GAMYB >>>>>>>    <---------HSFC1(2)     <---------LBD16       <---------GLK1(1)      <---------ANAC46      -------   --------->GLK1(1)      --------->MYB52(1) ----------->GT1 --------->ANAC46  <---------ANAC46<-----   <---------GLK1(1)     <---------ALFIN1 --------->MYB52(1)<---------LBD16  ------->TEIL     ------- -------LBD16  <------ZmHOX2a(2) --------->MYB46(3)      <---------CCA1(2) <---------ZAT14    <------ ---->HVH21    --------->GLK1(1) --------->ANAC58--------->GLK1(1)<---------ALFIN1     <---------ANAC46   ctcggaaacctcctccgatctctagacacaccggaacgaaccacgaacgggaaatctctgtatccggtacactctcgtgtaccgttgattcgtagagatc  23508800                                      --------->ANAC46                                      --------->ANAC55(2)                                      --------->ANAC55(1)                                 <---------WRKY45                                 <---------WRKY38(1)                                 <---------WRKY12                                --------->WRKY18(1)                               <-----------HVH21 ->ZmHOX2a(2)                <---------DEAR3(2) >>GATA-3                    <---------MYB46(3)    --------->ARR14(2) >>GATA-4                   --------->ETT(1)       <---------ARR14(2) >>GATA-2                 <-----------HVH21     ------>ZmHOX2a(2)                    <---------ALFIN1 >>GATA-1              ------>ZmHOX2a(2)       <------ZmHOX2a(2)                  ------>ZmHOX2a(1) -->ARR11(3)          <------ZmHOX2a(2)       --------->ARR14(2)              --------->ARR14(2) -ZmHOX2a(2)         <---------ARR14(2)       <---------ARR14(2)              <---------ARR14(2) -->AGP1             --------->ARR14(2)  --------->MYB52(1)               <-----------RAV1(2) ---ARR11(3)    --------->MYB52(1)    <---------ANAC55(2)              <---------ARR14(2)   tatagacgcttgaatgaacaacggatcgggtcgggtcaacacttaacggatccgattcgacttcatcggtgtaaatccaggttcctcccacttgtttttg  23508900                                                                                          -----------                                                                                          -----------                                                                                        <---------ANAC46                                                                                        <---------ANAC58                                                                                        <---------ANAC58                                                                                     --------->ALFIN1                                                                                    ------->MYC4                                                                                    ------->PIF5                                                                                    <-------MYC4                                                                                    <-------PIF5                                                                                    ------->MYC2                                                                    <---------ALFIN1------->MYC3                                                                   --------->ZAT2   <-------MYC2                                                              --------->TCP20       <-------MYC3                                                              <---------PCF2       ==================                                                              --------->ARR14(2)   <---------PIF3(3)                                                              <---------ARR14(2)   --------->PIF3(3)                                                             <------NtERF2         <---------TGA1a                                                             --------->ATERF1(1)   --------->TGA1a                                                            <---------ATERF1(1)    --------->O2                                                            --------->ABI4(2)      <---------O2                                                            <---------MYB46(3)     --------->bZIP60(2)                                                            --------->MYB55(2)     <---------ANAC46 -                                                            <---------DEAR3(2)    ------>NtERF2    --                                                            ------>NtERF2      <-----------HVH21   --                                                           <---------ANAC46   --------->ANAC46     <-                                                          <---------MYB52(1)  --------->DEAR3(1)   <-                                                          <---------LBD16     ------->GAMYB ---------                                              <---------At4g35610  <---------ZAT2<---------ALFIN1  --                                              ------>NtERF2<---------DEAR3(1) ===============MYC_MYB<                                        <---------ANAC58 --------->LBD16      --------->RAP2.6(2)  <-            --------->AtMYB61           ==============================================MYC_MYB      --           --------->MYB46(3)           <---------ANAC58<---------RAP2.6(2)  ================MYC_MYB< <---------HSFC1(1)                     --------->TGA1a <---------DEAR3(1)   <------------AtMYB77 <-- --------->HSFB2a(2)                    <---------TGA1a--------->SPL7        --------->MYB46(3)   <-- --------->HSFC1(1)----------->HVH21    ==================================================MYC_MYB<--- <---------HSFB2a(2)                --------->ARR11(3) <---------LBD16     --------->ARR14(2) ------>ZmHOX2a(2)   tttctcgaaaacgaccactgagtgaccttctcgtcgaagctctcgtgccgctactagtccggcgggtccagcaccgataaccgccacgtggtgtgatctg  23509000             <-------PIF5     --------->ICU4 >ARR10      ------->PIF5 >HVH21     --------->At4g35610 ======MYC_MYB ---------->GT1 ------->MYB111(1) ------->MYB111(2) --------AtMYB61 --------DEAR3(1) >ARR11(3)  --------->ZAT2                                                         ------------>CBF ------->MYB46(2)                                                          --------->AHL20(2) ------MYB46(1)                                               <---------ALFIN1 --------->YAB1 --------MYB46(3)      <---------ANAC58                     <---------ALFIN1   --------->ATHB12 ------->MYB55(2)      <---------ANAC58 --------->GLK1(2)   --------->ANAC58   <---------ICU4    ---- ------MYB83<---------At4g35610  --------->ATHB12 --------->YAB1           <---------AHL20(2)    <--- ------P  <-----------RAV1(2) <----------DOF2   ------->TEIL--------->ANAC58  <---------YAB1    ----- -------MYB55(1)       <---------ANAC46<---------GLK1(2)--------->YAB1------------>CBF        ------- ------MYB52(1) <------NtERF2 --------------->AGL15------------>CBF  <-----------GT1         <-------   gttggtgataatgcaggtgccatttgtgtgttctttgattagaatctatgaatcacaatcacacacacttgttacaatttatgattacaatgtttttaat  23509100        <---------ANAC58        <---------ANAC58      <------MYB83                  <---------YAB1             <---------WOX13(1)      <---------ANAC58           <---------MYB52(1)           <-------GAMYB      <------MYB46(1)          ----------->GT1               <---------MYB46(3)      <---------ANAC46      <---------ARR14(2)              <---------AtMYB61      <---------ANAC58      --------->ARR14(2)          ------->MYC3                         <------- ----->YAB1                 --------->GLK1(2)           <-------MYC3                         <------- ------ICU4              --------->ANAC58              --------->O2                    <---------AHL20(2) ---->ICU4--------->ALFIN1  ------->TEIL         <---------WOX13(1)                   --------->AHL20(2) -->YAB1<---------ANAC46 --------->ANAC58       <------------CBF                     <---------YAB1 --AHL20(2)              --------->ANAC46     <---------TOE2(2)<--------P       <----------DOF2   aatcaatttggtgtgttagaaacttacacgaatctgttattacagacgtagattgccacgttttggttgatagagagaaatgcttttattatataacttg  23509200                                                    --------->YAB1                                                    <---------ICU4                                       --------->YAB1                                      ------------>CBF                                      <---------ATHB12                                            <--                                    --------->WOX13(1)                                            <--                                  ------------>CBF --------->ICU4                              <----- <------------CBF         --------->At5g28300    --------->WOX13(1)    <----------DOF2         <----- --ANAC58                ----------->GT1       ------------>CBF    --------->GLK1(1)        <-------- --ANAC58       <---------ALFIN1 --------->TOE2(3) <---------ATHB12<---------GLK1(1)<-----------GT1   tgtcattgtatttcttctccaccgagacagtgaaacatcaatcaatatgagcaatcatcaaactgtgagatttcttttctctcattttgcccttccactt  23509300      <---------WOX13(1)                                                                        <----     <------------CBF                                                                  ----------->HVH21    --------->ATHB12                                                               <---------ANAC58   <---------YAB1                                                         ---------->DOF2       <----   --------->ICU4                                                       --------->ARR11(3)  <-------- -------ANAC58                                                      ---------->DOF2<---------ANAC58 -------ANAC58                                                <---------ZAT14    <---------ARR14(2) ----DAG2              --------->ZAT18                        <---------ZAT18  <---------MYB46(3) -----DOF2             --------->ETT(2)   --------->ANAC58    --------->ZAT18 --------->ALFIN1 <----- -ALFIN1     ---------->ID1               --------->ANAC58 <---------ANAC46--------->DAG2 <----------   tcttgatgattgtttgttttttttgtggacagaagcaggtattgaagcaattggagccatggtgtgaacttaaagataaagtggttcttgtgacaggtgc  23509400                               ------>ZmHOX2a(2)                             <---------ARR11(3)                         <---------ANAC58                         <---------ANAC58                     ------>ZmHOX2a(2)                    <------ZmHOX2a(2)                   --------->ARR14(2)                           <---------At4g35610 ==========================HOX2a_HOX2a                          <---------ZAT2 ------>ZmHOX2a(1) --------->ARR11(3)                           --------->At4g35610 =====================================HOX2a_HOX2a               --------->ZAT2 ===========================HOX2a_HOX2a                      <---------At4g35610 -----ANAC58       <---------ARR14(2)       <-------GAMYB --------->At4g35610 -----ANAC58       <---------ARR11(3)      <---------MYB46(3)--------->At4g35610               <----- -At4g35610        --------->AGP1 --------->AtLEC2  >>>>>>>>>ARR1                              ------ --TEIL           <---------GLK1(1)     <---------ZAT2    <---------At4g35610  ------>ZmHOX2a(2) -RAV1(2)         --------->GLK1(1)  ---------->DOF2>>>>>>>>>ARR2     <---------ANAC46     XXXXXXXXXX   ttcctctggtatagggagagagatctgtcttgatctatgcaaagctggttgtaagattgtagcagcagctcgtcgtgttgatcgtctcaactctctctgt  23509500  Previous    Next  AGI:  At1g63370.1    Description:  flavin-containing monooxygenase family protein / FMO family protein. similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62620.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70340.1); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-b Range:  from: 23506870    to: 23509023    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g63380.1    Description:  short-chain dehydrogenase/reductase (SDR) family protein. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT1G62610.3); similar to unknown [Populus trichocarpa] (GB:ABK93994.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040) Range:  from: 23509306    to: 23510169    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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