Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    ------>MYB46(1)                                                                                  ------>MYB83                                                                          <---------ICU4 -MYB46(1)                                                               --------->ICU4 -MYB83                                                               <---------YAB1 ----At4g35610                                                ----------->GT1   <---------MYB59 ----- ----->GT1                             <----------DOF2    --------->ATHB12--------->YAB1        ----- ---DEAR3(1)<---------ANAC46   ------->TEIL              <---------YAB1--------->YAB1          <-----   tgatacaaatagatgtgtatattttgcaaaatgaatgcatactttggttttgttgacatatgattagaaaaaatgataatgaccaaacttgtattgtatc  23416000                                                                                --------->TOE2(3)                                                                                --------->TOE1(3)                                                                                --------------->AGL15                                                                                <---------------AGL15                                                                               ----------------->AGL3                                    <----------DOF2                            ----------------->AGL2                                 <---------ARR11(3)                            ======================                                 --------->ARR11(3)                       --------->ARR14(2)                                 <---------AGP1                   <-------TEIL <-----------------AGL3                            --------->CCA1(2)                     <---------WRKY38(1)                           --------->ARR11(3)                     <---------WRKY12                           <---------ARR14(2)     --------->CCA1(2)       <---------ARR14(2)                      --------->MYB52(1)         <---------ARR11(3)  --------->ANAC46    --------->YAB1    ------>MYB83<------ZmHOX2a(2) <---------AHL20(2)<-------MYC3 ---->ATHB12          ------>MYB46(1) <-----------GT1         --------->MYB59<-----------GT1 ---->YAB1          <---------MYB59------>ZmHOX2a(2)--------->AHL20(2)------->MYC3       ---------->DOF2 ----YAB1     --------->ALFIN1   --------->AGP1  --------->ARR11(3)<---------ALFIN1   --------->YAB1   attgtatcatatacaagtggaaccaaacagatatagatctttacaatccaagatataaattggtaaggtccacgcggtttcaccttaattagaaagggac  23416100                                                                                             --------               --------->AHL20(2)                                                         <---------ICU4        --------->AHL20(2)                                                      ---------->ID1        --------->YAB1               <-----------------AGL3                 <----------DOF2  <-------  --------->ANAC46    <---------TOE2(3)  <---------ARR14(2)                 --------------------->WRI1 ======================================================MADS_MADS      --------->GLK1(2)--------->YAB1   atctcagcaataaaaaaaaaaatgaaggaaatatagttagacaaatatggaaccaaaatagcaaaacttgataatcttctttgtttttttcatatttatt  23416200                                                              ------>MYB83                                                              --------->MYB52(1)                                                              ------>MYB46(1)                                                            <---------MYB59                         -                                                            --------->AtMYB61                      <-       ------>NtERF2                                --------->ICU4                                ---     <---------ANAC58                               <---------YAB1            --------->YAB1  <------     <---------ANAC58                          <---------ANAC55(2)           <---------YAB1  --------   <-----------RAV1(1)                         --------->ANAC55(2)----------->GT1          <---------ICU4 ->AHL20(2)                              <-------TEIL--------->YAB1        --------->YAB1<---------ARR11(3) --AHL20(2)<----------DOF2          --------->AHL20(2)   <-----------GT1   <---------ICU4--------->ARR11(3)   tgctaatgctggcctttcaatttagaactaaaccaaaaaaaaatacattatgtgattataaaccaaaccggtgataaaaatgataagatgaaatcttgac  23416300                                                                                     <---------ANAC46                --------->ALFIN1                                                     <------MYB83         --------->MYB46(3)                                                          <------MYB46(1)         ------>ZmHOX2a(2)                                                          --------->MYB111(1)     <---------ATHB12   --------->ARR14(2)                                          <---------MYB46(3) <---------WRKY38(1)    <---------ARR14(2)                                          --------->MYB111(2) <---------WRKY12<---------MYB46(3)                                                 --------->MYB46(2) -------->WRKY18(1)<---------ANAC46                                                 --------->MYB59 ----------HVH21<---------DEAR3(1)                                                  <---------AtMYB61 -------->GT1   <---------AtMYB61                                               <------MYB83 ---WRKY18(1) ------->GAMYB         <---------ARR11(3)                          <------MYB46(1)*TSS --->HVH21 --------->MYB52(1)     ------->TEIL                               <---------MYB52(1)------   cggtcaaatgatccaacggtggtgcgaaactggatgaatatcactctcactctctcagcctatgtgagtctctctctctgtttggtttggtagaaccaaa  23416400                                    <---------ICU4                          <---------YAB1       <----------DOF2             <---------YAB1                        --------->GLK1(2)      --------->TOE1(3)         <-------TEIL     <-----------GT1        <---------GLK1(2)      --------->TOE2(3)     --------->DAG2<---------TOE2(3)           <---------YAB1             <--- ---->DOF2                ---------->DOF2 <---------TOE1(3)         <-----------GT1       <---------HSFB2a(2)   agttcaaacctttactctctctgtctgcaaaaggttcatcatttagggtttatacaagtttacagagagtttacgattctgaatcagtgattttggaaga  23416500        --------->At4g35610        <---------ZAT2                                                          --------->DAG2        <---------At4g35610                                                   ---------->DOF2        --------->ZAT2                                                   <---------LBD16 --------->ALFIN1        ----------->RAV1(2)                          <---------GLK1(2)   <-----------------AGL1     <---------ATHB12      <---------ANAC58          --------->ARR14(2)  --------->HSFB2a(2)<--------   --------->WOX13(1)      <---------ANAC58          <---------ARR14(2)  <---------HSFB2a(2)--------- ------GLK1(1)      <------ZmHOX2a(1)     <---------LBD16     <---------At4g35610----------->GT1    <   aaccccaatcagctgaagatgaggagattgtttgcgatttcatcgacgggaaacagatttgttcatcggagtcttctcggaaaaggtaaatgtggaactg  23416600                                     --------->GLK1(1)                                <---------TOE2(1)                                <---------TOE1(1)         <---------MYB52(1)    --------->SPL7        <----------DOF2      <---------SPL7    ------>ZmHOX2a(1)    <---------LBD16                  <---------YAB1 ------>ZmHOX2a(1)     --------->GLK1(2)             --------->CCA1(2) -ARR14(2)            <---------ARR14(2)      <---------ZAT6 >ARR14(2)        --------->ZAT14    <---------GLK1(1) <---------YAB1   ----------->GT1 ---------ALFIN1  <---------ZAT14   <---------ARR11(3) --------->ICU4--------->RVE1(1)   --------->ATHB12   ctcctccttcctttagccattgcagtttctgggtacgagatttctctggtgttagatatgattacagaaaaatatcgataaataggctaaatgatttgaa  23416700                                 <---------WRKY38(1)                      <---------ANAC58                      <------MYB83                      <------MYB46(1)                      ----------->GT1                      <---------ANAC58                     <---------MYB46(3)                     <---------DEAR3(1)                                        <---------ANAC58                   <---------MYB52(1)        ------>ZmHOX2a(1)        <---------ZAT14           <---------MYB52(1)   --------->WRKY18(1)                   --------->ZAT14          --------->At5g28300  <-----------HVH21                 <---------ZAT14          <-------GAMYB<-----------HVH21     <----------DOF2     --------->ZAT14         ----------->GT1   <---------bZIP60(2)                   --------->ZAT18        <---------ANAC46----------->HVH21 ---------->ID1 <---------MYB46(3)    <---------ANAC58   gctagatgatgcggttaatctgttcggtgacatggtcaagtctcgtcctttcccttcgattgttgagttcagtaaactgttgagtgccattgctaagatg  23416800                                     <---------------AGL15                                     --------------->AGL15                                <---------At4g35610                                --------->At4g35610                       <---------DEAR3(1)                                                         <--                <---------CCA1(2)   <-----------------AG    <---------ICU4                       ----                <---------At4g35610 <-----------------AGL3<---------ARR11(3)                    -----                --------->At4g35610<-------TEIL           --------->GLK1(2)--------->ZAT14      -----            <-----------HVH21<---------At4g35610      --------->ANAC46     <---------ARR14(2)  ------         ------>ZmHOX2a(2)   <---------ZAT2           --------->ANAC55(2)  --------->ARR14(2) <------       --------->ARR11(3)<------NtERF2              <-----------GT1   <-------TEIL            -------   aacaagttcgatcttgtcatctctctcggcgagcagatgcaaaatttgggaatttcacataatctttacacatacagtattctcatcaactgtttctgcc  23416900  Previous    Next  AGI:  At1g63130.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 23416395    to: 23418814    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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