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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                           --------->DEAR3(1)
                          --------->DEAR3(2)
                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                          --------->ANAC58
                          <xxxxxxxxxxxxxxxxsmallRNA(i)          <---------ALFIN1
                          --------->ANAC58                     --------->ZAT14
                        <xxxxxxxxxxxxxxxxsmallRNA(s)           --------->ZAT18
                        xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------ZAT14
                       <xxxxxxxxxxxxxxxxsmallRNA(i)           --------->AtMYB61
                      --------->ANAC58                     xxxxxxxxxxxxxxxx>smallRNA(s)
                   <---------ARR14(2)                    xxxxxxxxxxxxxxxx>smallRNA(s)
              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxx>smallRNA(s)
            xxxxxxxxxxxxxxxxxx>smallRNA(se3)           xxxxxxxxxxxxxxxx>smallRNA(s)
         --------->At4g35610        <---------ZAT14    --------->LBD16
         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        --------->ANAC46
         <---------At4g35610 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         --------->LBD16
        xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           --------->LBD16
       <---------WRKY12<---------ABI4(2)             --------->HSFB2a(2)
      --------->WRKY18(1)------->TEIL                <---------HSFB2a(2)                           -
     <-----------HVH21--------->ANAC58              <---------LBD16                      --------->TOE2(3)
   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     --------->ICU4
  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------GLK1(1)
  <---------LBD16  --------->ARR14(2)    --------->ZAT14---------->DOF2               --------->GLK1(1)
 
actaatccggtcagcctcggtagaaacgcaccgaagtacttcagagtagacttctccccgaaagaccacactgtctgtctcgagtttggaattcttagta  23309800
                                     --------->DAG2
                                    ---------->DOF2
                                --------->ANAC58
          <---------ZAT18       --------->ANAC58
          --------->ZAT18  ----------->HVH21
         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)
         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <---------YAB1
      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                      --------->ANAC58
      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     --------->ANAC46
    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       --------->ANAC58  ----------->GT1
   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      ---------->DOF2<---------AHL20(2)<----
---------->GT1           ----------->GT1 --------->ZAT14 <-------TEIL----------->GT1           -----
 
gagagtttaatagggcacatcttagagatggtgacaaggaaaagtttactcttaaaaatgttcataaaagcaaggtttattaaaactgaaaattgcaagt  23309900
                                                                         --------->ANAC58
                                                                         --------->ANAC58
                                                             --------------->AGL15
                                                             <---------------AGL15
                                                            <-----------------AGL2
                                                            <-----------------AG
       --------->LBD16                                      <-----------------AGL1                 -
      <---------ANAC58                  ------------>CBF    ----------------->AGL3                 -
      <---------ANAC58                 <-----------GT1      <-----------------AGL3               ---
      <---------ANAC46      <---------GLK1(2)      --------->ARR11(3)   --------->DAG2           ---
-------RAV1(1)          <---------At4g35610    ----------->GT1     <---------TOE2(3)        <-------
---->ALFIN1   ----------->GT1       <------------CBF  <---------TOE2(3)---------->DOF2     <--------
 
gttgttcttccgtctaatggtttatttatctgattctcgtattgacaatatggagataatgtttctgtttatggaaaagcaaggtgaagaggcatcttta  23310000
                                                                                        <---------MYB52(1)
                                                                                       <-------GAMYB
                                                                                      <---------DEAR3(2)
                                                                                      <---------MYB46(3)
                                                                                      ----------->GT1
                                                                                      <------MYB46(1)
                                                                                      <------MYB83
                                                                                     <---------DEAR3(1)
                                                                                    <---------MYB55(1)
    --------->YAB1                                                                  <--------P
----->MYB83--------->TOE2(3)                                                       <-----------HVH21
----->MYB46(1)                                   ------>MYB46(1)                   <---------MYB52(1)
------>TOE1(2)                                   ------>MYB83                  ------->TEIL<--------
------>TOE2(2)    ---------->DOF2           <-----------GT1                  --------->ZAT18
---DOF2    --------->TOE1(3)            --------->YAB1                       --------->ZAT14
-ICU4     ----------->RAV1(2)      ------------>CBF  <---------SPL7          <---------ZAT14 <------
 
cctacgctcataaacctgaacaaaagagacattaactgaacaatattaaaccaaatcgtaccagagaagagaagtcagagtgaaccggtcggttattaaa  23310100
                                                            --------->ANAC58
                                                            --------->ANAC58
                                                          ---------->DOF2
                                                         <---------ARR14(2)
                                                         --------->ARR14(2)
                                                       ----------->ARR10         <---------TOE2(3)
                                                      <------NtERF2              <---------TOE1(3)
                                                     ------>NtERF2<---------ARR11(3)
                              <---------ICU4        <---------ANAC46------>ZmHOX2a(2)        <------
                             --------->ICU4       ------->GAMYB   --------->ARR14(2)         -------
                     <---------WRKY18(1)         <---------DEAR3(1)<------ZmHOX2a(2)        <-------
                <---------ARR11(3)             --------->MYB52(1) <---------ARR14(2)        <-------
                --------->ARR11(3)           --------->MYB46(3)   --------->ARR11(3)        --------
   --------->ICU4 <---------ICU4             ------>ZmHOX2a(2)   <---------GLK1(1)      ------------
-YAB1          --------->GLK1(1)    <---------MYB59--------->RAP2.3(1)        <---------REM1(2) ----
---AHL20(2)    <---------GLK1(1) <-----------GT1 --------->ANAC46--------->GLK1(1)----------->GT1
 
actggaatatttaagaagaaatcttgaccgtcaaaattaccaaaatgatccaacggcgcagaaacgcgagatccctccgtcttcaaggttaaacaataat  23310200
                                                                           ---------->DOF2
                                                                        <---------TOE2(3)
                                                                    <---------At4g35610
                                                                    <---------ZAT2
                                                                    --------->At4g35610
---ICU4                                                             --------->ZAT2
-->YAB1                                                           <-----------RAV1(2)
--ATHB51                                                    --------->CCA1(2)  <---------GLK1(2)
--ATHB12                                                   --------->ARR14(2) <---------HSFC1(2)
->ICU4                                                     <---------ARR14(2) --------->HSFC1(2)
>CBF                                                     ----------->ARR10<------ZmHOX2a(1)
----->YAB1                                          <---------ANAC46----------->RAV1(2)
 
gacaagttgtgttcatttagggattgtcgcatcacaatcgaagaagatgagtttggcgaagagatttgctcagctgaggaaagcttctccattgttttcc  23310300
                                                                                                  <-
                                                                                                  <-
                                                                                                  <-
                                                                                                 <--
                             --------->ZAT6                                                    <----
                 <---------At4g35610                                                        ========
                 --------->At4g35610                                                        ------>ZmHOX2a(2)
                 <---------ZAT2  --------->ZAT14              <---------ANAC58            <---------AGP1
                 --------->ZAT2  <---------ZAT14              <---------ANAC58         <--------P<--
                <-----------RAV1(1)                      --------->ALFIN1             <-------GAMYB<
<---------HSFB2a(2)         <---------YAB1               <-----------RAV1(1)         <---------MYB46(3)
--------->HSFB2a(2)  <---------ANAC46          <---------ANAC46                     <---------RAP2.6(2)
 
cttcgaggtgtctatttctctgctgcgagttatgactacagagagaaattgagtagaaatgtgttgctcgatttgaagctagatgatgcggttgatctgt  23310400
         --------->ZAT14
     <---------------AtSPL3
     <---------------AtSPL8                                                                        <
-----MYB46(1)                                                                               <-------
-----MYB83                  ------>MYB83                                                    <-------
--------ANAC46              >>>>>>>>>>>>>>>>>LFY                                            <XXXXXXX
-------DEAR3(1)             ------>MYB46(1)                                                 --------
-----MYB52(1)        <----------DOF2                                                    <-----------HVH21
============================HOX2a_HOX2a                                              ------>ZmHOX2a(2)
-------MYB46(3)      ------>ZmHOX2a(1)                 <---------ANAC58            <---------ARR11(3)
-----------HVH21  ---------->ID1                       <---------ANAC58            --------->ARR11(3)
 
tcggtgagatggtacagtctcgtcctttaccttccattgttgaattcaataaactgttgagtgccattgctaagatgaacaagtttgatcttgtcatctc  23310500
                                                            <-----------GT1
                                ----------->HVH21           --------->MYB52(1)
                              <---------At4g35610         <---------WOX13(1)
     <---------At4g35610 <---------GLK1(1)             <---------YAB1
 <------NtERF2           --------->GLK1(1)         <---------ARR11(3)                          <----
---------DEAR3(1)      <------ZmHOX2a(1)           --------->ARR11(3)                ------->GAMYB <
--CCA1(2)       --------->ARR14(2)                 --------->AHL20(1)              <---------At4g35610
--At4g35610     --------->GLK1(2)                  <---------AHL20(1)              --------->At4g35610
XXXXXXXXXXXXXXMIR173 <---------TOE2(3)    --------------->AtSPL8        <---------ETT(2)      <-----
->At4g35610     <---------ARR11(3)        --------------->AtSPL3        --------->ETT(2)      <-----
 
tctcggcgagcggatgcaaaatctgaggatttcatatgacctctattcgtacaatattttgattaactgtttttgtcgacgctctcaactccctcttgct  23310600
                                                                                           ---------
                                                                                           <--------
                                                                                          <---------
                                                                                          --------->GLK1(1)
                                                                                         ---------->TaMYB80
                                                                                         --------->ARR11(3)
                                                                                         <---------ARR14(2)
                                                   <----------DOF2                       --------->ARR14(2)
                                                --------->ANAC58               --------->ANAC58
                                                --------->ANAC58               --------->ANAC58-----
------DOF2                                    <-----------GT1           --------->SPL7   <---------ARR11(3)
---------At4g35610                          <-----------HVH21       <---------------AtSPL3<---------GLK1(1)
----ANAC58           ------->TEIL      --------->ARR14(2)      ------>ZmHOX2a(1) --------->At5g28300
----ANAC58        <---------YAB1       <---------ARR14(2)    <-----------------AGL1     <------ZmHOX2a(1)
 
ttagctgttcttggcaagatgatgaaactcggctatgagcccgatattgtcacgctttcttcgctcctcaatgggtactgccacggtaagaggatatccg  23310700
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AGI:  At1g62920.1   
Description:  similar to proteasome maturation factor UMP1 family protein [Arabidopsis thaliana] (TAIR:AT1G67250.1); contains InterPro domain Proteasome maturation factor UMP1 (InterPro:IPR008012)
Range:  from: 23307978    to: 23310039    Orientation: Forward
Links:  TAIR  MIPS 
 
AGI:  At1g62930.1   
Description:  binding. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63080.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to hypothetical protein [Brassica rapa] (GB:ABQ50546.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 23310199    to: 23312348    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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