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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<------------
------->
GAMYB
--------->
DAG2
--------->
ANAC58
--------->
AHL20(2)
--------->
DAG2
--------->
AHL20(2)
--------->
ANAC58
---------->
DOF2
---------->
DOF2
-
DOF2
<-----------
GT1
<-------
TEIL
<-------
TEIL
----------->
GT1
agtttatatatcagtaactagaattcacaacccaaaataaaattcatatggaaagtccatgttaaaatttttgttagtgaaatggtgaaaaaggtactac
23295200
---------->
DOF2
<----------
DOF2
<---------
DAG2
<---------
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
<-----------
GT1
--------->
WOX13(1)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
DAG2
<---------
AHL20(1)
<---------
AHL20(1)
----------->
GT1
---------->
DOF2
<---------
AHL20(2)
---
AtSPL8
<---------
AHL20(2)
--------->
DAG2
<----------
DOF2
--------->
AHL20(2)
tagtaaacttcatattttatttccctttttaaaaaagtagaataagttaactaaaacaacttttaaaagtggcaattacattaggccaatttttttaaaa
23295300
<------
ZmHOX2a(1)
<---------
WOX13(1)
--------->
ATHB12
<---------
YAB1
--------->
ICU4
<----
<---------
ANAC55(2)
--------->
ANAC55(2)
--------->
DAG2
--------->
YAB1
<-------
---------->
DOF2
<---------
ATHB12
--------
----------->
GT1
<---------
ALFIN1
--------->
WOX13(1)
--------
atgtattgagacatatagctaaaacaaaatttgttacaaaaaaaacacactcacacatcgaaaaagctggattttttcaatcacatgattgaaggagctc
23295400
<---------
ALFIN1
--------------->
AGL15
<
<---------------
AGL15
<--
----------------->
AGL1
---
----------------->
AGL2
<--
========================================================================
MADS_MADS
---
----------------->
AGL3
----------->
GT1
<---------
AHL20(2)
---
--------->
PCF2
--------->
DAG2
<----------
DOF2
<------
-----
LBD16
---------->
DOF2
--------->
ATHB12
<------
--
GLK1(1)
----------->
GT1
--------------->
AGL15
-------
->
GLK1(1)
----------->
GT1
----------->
GT1
<---------------
AGL15
<-------
->
At4g35610
---------->
DOF2
<---------
YAB1
--------->
TOE2(3)
--------
tgggttccacattcagtaaaatttttaaaaagataaaaagtaatttctgattcagtgttttcttaattgggcttaatttatgacccatgggcttaataat
23295500
<------
ZmHOX2a(2)
<---------
YAB1
--------->
SPL7
---------
SPL7
*
TSS
---
-------------
AtSPL8
--------->
HSFB2a(1)
------>
MYB59
------->
TEIL
-------------
AtSPL3
<---------
HSFB2a(1)
------------>
AtSPL3
--------->
HSFB2a(1)
------------>
AtSPL8
--------->
ATHB12
--------------->
AtSPL3
--
ATHB1
<------------
CBF
<---------------
AtSPL8
---
ICU4
--------->
LBD16
<xxxxxxxxxxxxxxxx
smallRNA(i)
->
HAHB4
--------->
AHL20(2)
<---------
LBD16
---------->
DOF2
---------->
DOF2
<<<<<<<
--
ATHB51
<---------
YAB1
<---------
LBD16
<---------
DEAR3(2)
<----------
ID1
<---------------
AtSPL3
->
ICU4
--------->
YAB1
<---------
MYB52(1)
<---------
MYB46(3)
----------->
GT1
--------------->
AtSPL8
tcggtacgatcataatatagaaccgtttagaaccgggaattgatttcatcggttcaacaaaacataaaaggtcaaaaaccaaaagaacgtacc
ttcttct
23295600
--------->
HSFB2a(2)
------->
TEIL
<---------
ARR11(1)
--------->
GLK1(2)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ARR14(1)
<---------
CCA1(2)
------>
ZmHOX2a(1)
--------->
TOE1(2)
------>
ZmHOX2a(1)
--------->
ZAT6
<------
ZmHOX2a(2)
--------->
TOE2(3)
------>
ANAC46
<-----------
HVH21
---------->
DOF2
<---------
CCA1(2)
<<
TBF1
--------->
ARR14(2)
<---------
HSFB2a(2)
<---------
ZAT14
<---------
ETT(1)
<----------
DOF2
--
tcgacactagttcctccgatcagcgaatctcgaagaaagagattgaaactaaactgttgaaattttccgacaataaacttatctcttttcctcattcaat
23295700
<-----------
RAV1(2)
------>
NtERF2
<------
NtERF2
--------->
ANAC58
<---------
ATERF1(1)
--------->
ANAC58
<---------
DEAR3(2)
--------->
TOE1(3)
<---------
DEAR3(1)
----------->
GT1
<------
NtERF2
<------
ZmHOX2a(1)
--------->
DAG2
--------->
ANAC58
<-----------
HVH21
---------->
DOF2
---------->
DOF2
--------------------->
WRI1
<------
ZmHOX2a(1)
<-------
---->
ZmHOX2a(1)
---------->
DOF2
--------->
ANAC58
<---------
DEAR3(1)
<------
ZmHOX2a(1)
<--
cctagagaccaaaaagcttaaaagcaaaaaagaacacaaggaaatttactcagaggtaatcgtcgtcggagccaggaggaagaggaggg
atgggagaggt
23295800
<-----------
GT1
--------->
ZAT6
------>
ZmHOX2a(1)
--------->
TOE1(3)
--------->
TOE2(3)
<----------
DOF2
<---------
ICU4
--------->
WOX13(1)
<---------
ALFIN1
--------->
TOE2(3)
--------->
TOE1(1)
<-----------------
AGL1
--
AtMYB61
<---------
AHL20(2)
--------->
HSFB2a(2)
------>
ZmHOX2a(2)
------
-------
HSFB2a(2)
--------->
YAB1
<---------
HSFB2a(2)
<-------
TEIL
----------------->
AGL1
------
ctggacatggattatttcattcttaatccttatcactcttctcggactcatcgtctatcag
gttcgatctgattcccactttggacaaaaaaaaaaacct
23295900
--------------------->
WRI1
---------->
ID1
<------
ZmHOX2a(2)
<----------
DOF2
<---------
ANAC58
--------------------->
WRI1
--->
TOE2(3)
<---------
ANAC58
<---------
At4g35610
<---------
ZAT14
<-
--->
TOE1(3)
<---------
MYB46(3)
<---------
ANAC46
--------->
At4g35610
--------->
ZAT14
<------
aaaactgtttactttggttccatcgactcttcttgcttgttgtatttgaataaactctgcttaggcttattcgatcactgtattgaactaaatttagtgt
23296000
--------->
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------------
AGL15
--------->
YAB1
<----------
DOF2
<---------
ATHB12
----------->
GT1
--------------->
AGL15
<----------
DOF2
--------->
DAG2
<---------
TOE2(3)
------
--------
ANAC46
----------->
GT1
---------->
DOF2
<---------
TOE1(3)
<---------
---
ZAT6
--------->
WOX13(1)
----------->
GT1
<----------
DOF2
--------->
AHL20(2)
tttgtgttctttcaatcataaatcgtttataagaaatgtttctaagttttgggaatgtgataaagttagtaactttagggtttctttatataataactag
23296100
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AGI:
At1g62880.1
Description:
cornichon family protein. similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16964.1); contains InterPro domain Cornichon; (InterPro:IPR003377)
Range:
from: 23295594
to: 23297223
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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