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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                   <---------AHL20(2)
                                  --------->AHL20(2)
                                  <---------AHL20(2)
                                  --------->AHL20(1)
                                  <---------AHL20(1)                                   <------------
                           ------->GAMYB                                               --------->DAG2
                         --------->ANAC58                  --------->AHL20(2)         --------->DAG2
--------->AHL20(2)       --------->ANAC58      ---------->DOF2                       ---------->DOF2
-DOF2                <-----------GT1   <-------TEIL <-------TEIL               ----------->GT1
 
agtttatatatcagtaactagaattcacaacccaaaataaaattcatatggaaagtccatgttaaaatttttgttagtgaaatggtgaaaaaggtactac  23295200
                             ---------->DOF2
                     <----------DOF2
                     <---------DAG2                                                    <---------AHL20(2)
                 <-----------GT1                                                      --------->AHL20(2)
                <-----------GT1                                      --------->WOX13(1)--------->AHL20(2)
            --------->AHL20(2)                                --------->DAG2          <---------AHL20(1)
            <---------AHL20(1) ----------->GT1               ---------->DOF2          <---------AHL20(2)
---AtSPL8   <---------AHL20(2)--------->DAG2            <----------DOF2 --------->AHL20(2)
 
tagtaaacttcatattttatttccctttttaaaaaagtagaataagttaactaaaacaacttttaaaagtggcaattacattaggccaatttttttaaaa  23295300
                                                                                          <------ZmHOX2a(1)
                                                                                    <---------WOX13(1)
                                                                                  --------->ATHB12
                                                                                 <---------YAB1
                                                                                 --------->ICU4<----
                                                                               <---------ANAC55(2)
                                                                               --------->ANAC55(2)
                                                           --------->DAG2    --------->YAB1 <-------
                                                          ---------->DOF2   <---------ATHB12--------
                           ----------->GT1       <---------ALFIN1         --------->WOX13(1)--------
 
atgtattgagacatatagctaaaacaaaatttgttacaaaaaaaacacactcacacatcgaaaaagctggattttttcaatcacatgattgaaggagctc  23295400
   <---------ALFIN1
   --------------->AGL15                                                                           <
   <---------------AGL15                                                                         <--
  ----------------->AGL1                                                                         ---
  ----------------->AGL2                                                                         <--
  ========================================================================MADS_MADS              ---
  ----------------->AGL3          ----------->GT1                        <---------AHL20(2)      ---
--------->PCF2                   --------->DAG2                     <----------DOF2          <------
-----LBD16                      ---------->DOF2             --------->ATHB12                 <------
--GLK1(1)                  ----------->GT1                --------------->AGL15              -------
->GLK1(1) ----------->GT1 ----------->GT1                 <---------------AGL15             <-------
->At4g35610             ---------->DOF2    <---------YAB1--------->TOE2(3)                  --------
 
tgggttccacattcagtaaaatttttaaaaagataaaaagtaatttctgattcagtgttttcttaattgggcttaatttatgacccatgggcttaataat  23295500
     <------ZmHOX2a(2)
     <---------YAB1
 --------->SPL7
---------SPL7                                                                                *TSS---
-------------AtSPL8                                                                    --------->HSFB2a(1)
------>MYB59                                                                          ------->TEIL
-------------AtSPL3                                                                <---------HSFB2a(1)
------------>AtSPL3                                                                --------->HSFB2a(1)
------------>AtSPL8                  --------->ATHB12                             --------------->AtSPL3
--ATHB1                           <------------CBF                                <---------------AtSPL8
---ICU4                       --------->LBD16                           <xxxxxxxxxxxxxxxxsmallRNA(i)
->HAHB4  --------->AHL20(2)  <---------LBD16                  ---------->DOF2---------->DOF2 <<<<<<<
--ATHB51<---------YAB1      <---------LBD16   <---------DEAR3(2) <----------ID1   <---------------AtSPL3
->ICU4--------->YAB1 <---------MYB52(1)       <---------MYB46(3) ----------->GT1  --------------->AtSPL8
 
tcggtacgatcataatatagaaccgtttagaaccgggaattgatttcatcggttcaacaaaacataaaaggtcaaaaaccaaaagaacgtaccttcttct  23295600
                         --------->HSFB2a(2)
                      ------->TEIL
                      <---------ARR11(1)
                      --------->GLK1(2)
                      <---------ARR14(2)
                      --------->ARR14(2)
                     <---------ARR14(1)
                     <---------CCA1(2)
          ------>ZmHOX2a(1)
         --------->TOE1(2)                                                             ------>ZmHOX2a(1)
--------->ZAT6 <------ZmHOX2a(2)                                                      --------->TOE2(3)
------>ANAC46 <-----------HVH21---------->DOF2                               <---------CCA1(2)
<<TBF1--------->ARR14(2) <---------HSFB2a(2)  <---------ZAT14  <---------ETT(1)  <----------DOF2  --
 
tcgacactagttcctccgatcagcgaatctcgaagaaagagattgaaactaaactgttgaaattttccgacaataaacttatctcttttcctcattcaat  23295700
                                                                    <-----------RAV1(2)
                                                                  ------>NtERF2
                                                                <------NtERF2
                  --------->ANAC58                             <---------ATERF1(1)
                  --------->ANAC58                             <---------DEAR3(2)
            --------->TOE1(3)                                 <---------DEAR3(1)
           ----------->GT1                                   <------NtERF2<------ZmHOX2a(1)
         --------->DAG2           --------->ANAC58          <-----------HVH21
        ---------->DOF2 ---------->DOF2      --------------------->WRI1<------ZmHOX2a(1)    <-------
---->ZmHOX2a(1) ---------->DOF2   --------->ANAC58         <---------DEAR3(1)   <------ZmHOX2a(1)<--
 
cctagagaccaaaaagcttaaaagcaaaaaagaacacaaggaaatttactcagaggtaatcgtcgtcggagccaggaggaagaggagggatgggagaggt  23295800
                             <-----------GT1
                             --------->ZAT6
                         ------>ZmHOX2a(1)
                        --------->TOE1(3)
                        --------->TOE2(3)                                  <----------DOF2
                       <---------ICU4              --------->WOX13(1)   <---------ALFIN1
                 --------->TOE2(3)    --------->TOE1(1)               <-----------------AGL1
--AtMYB61   <---------AHL20(2)       --------->HSFB2a(2)        ------>ZmHOX2a(2)             ------
-------HSFB2a(2) --------->YAB1      <---------HSFB2a(2)   <-------TEIL----------------->AGL1 ------
 
ctggacatggattatttcattcttaatccttatcactcttctcggactcatcgtctatcaggttcgatctgattcccactttggacaaaaaaaaaaacct  23295900
        --------------------->WRI1 ---------->ID1                     <------ZmHOX2a(2)
        <----------DOF2        <---------ANAC58         --------------------->WRI1
--->TOE2(3)                    <---------ANAC58       <---------At4g35610  <---------ZAT14        <-
--->TOE1(3)<---------MYB46(3)  <---------ANAC46       --------->At4g35610  --------->ZAT14   <------
 
aaaactgtttactttggttccatcgactcttcttgcttgttgtatttgaataaactctgcttaggcttattcgatcactgtattgaactaaatttagtgt  23296000
                                                                                       --------->YAB1
                                                                                      <---------AHL20(2)
                                                                                  --------->AHL20(2)
                                                                                <---------------AGL15
            --------->YAB1                                                      <----------DOF2
           <---------ATHB12                                    ----------->GT1  --------------->AGL15
     <----------DOF2                                      --------->DAG2 <---------TOE2(3)    ------
--------ANAC46     ----------->GT1                       ---------->DOF2 <---------TOE1(3)<---------
---ZAT6  --------->WOX13(1)                        ----------->GT1   <----------DOF2 --------->AHL20(2)
 
tttgtgttctttcaatcataaatcgtttataagaaatgtttctaagttttgggaatgtgataaagttagtaactttagggtttctttatataataactag  23296100
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AGI:  At1g62880.1   
Description:  cornichon family protein. similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16964.1); contains InterPro domain Cornichon; (InterPro:IPR003377)
Range:  from: 23295594    to: 23297223    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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