Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      --------->AHL20(2) --------YAB1                                                       --------->ZAT14 --------->GT1                                                      --------->ZAT18 -----AHL20(2)                                           --------->At4g35610 --->AHL20(1)                                            <---------At4g35610 ----AHL20(2)                                            <------NtERF2 ----AHL20(1)             <----------DOF2             --------->At4g35610 --->AHL20(2) ----------->GT1                         <---------At4g35610                  <---------MYB46(3) -->YAB1     <---------TOE1(3)              --------->MYB52(1)      <---------ZAT14     --------->ALFIN1   aatgaaaaaaatgttagggataaataaacttttgtaatctcttaaacaccggtttgggctgcaaacagagagtactgcctggttttaagtgtgtggttca  23250200                                   --------->MYB52(2)                               <---------MYB46(3)                                        --------->ZAT14                            <----------DOF2                                              --------->At4g35610                      --------->ZAT14                                                    <---------At4g35610                      <---------ZAT18                                                    <---------ZAT14                     <---------ANAC58             --------->ARR11(3)                <---------YAB1                     <---------ANAC58             <---------ARR11(3)        <---------ZAT2                    --------------->AtSPL3  <------NtERF2   <---------ARR14(2)   <---------YAB1                  --------->DAG2 <---------MYB52(1)    --------->MYB52(1)   --------->ZAT2                 ---------->DOF2 <--------P------>NtERF2    --------->ARR14(2)   --------->ICU4    --------->AHL20(2)--------->ZAT18     <----------ID1>>>>>>>>>MYB98      <---------At4g35610   caaaaaaaaaatgttagggaaaagcgtactctttggttagtttggcgacgaagatagtaacggatttggctcgagccaagctgatgatgagagcagtctg  23250300                                   <---------ANAC58                                   <---------ANAC46                                   <---------bZIP60(1)                                <---------DEAR3(1)                          <------ZmHOX2a(2)                         <---------ARR11(3)                         <-----------ARR10                         <---------ARR14(3)                         --------->ARR14(3)                         --------->GLK1(2)                         --------->ARR11(3)                         <---------AGP1                         <---------ARR14(2)                         --------->ARR14(2)             --------->ANAC58      --------->MYB55(2)              <-----------RAV1(1) <------NtERF2         --------->ANAC46      <---------MYB46(3)             <---------YAB1------>ZmHOX2a(2)            --------->ANAC58      <------MYB46(1)     ------>ZmHOX2a(2)   <---------ARR11(1)          <---------ZAT14          <------MYB83    <------ZmHOX2a(2)   <---------CCA1(2)            <---------ZAT18         <---------AtMYB61   --------->AGP1<-----------RAV1(1)                 --------->ZAT18       <---------ANAC46   --------->ARR14(3)   <------NtERF2             <---------ANAC58         <---------ANAC58   <---------ARR14(2)   <---------ARR14(1)        --------->ALFIN1         <---------ANAC58   <---------ARR11(3) <---------ANAC58          --------->ALFIN1          --------->MYB55(2)   --------->ARR14(2) <---------ANAC58  <---------At4g35610               <---------MYB46(3)   --------->ARR11(3) <---------ANAC46  --------->At4g35610       <---------WOX13(1)   <---------ARR14(3)<---------LBD16<---------SPL7<---------ANAC58<---------ANAC46   <---------AtLEC2 ----------->ARR10 --------->ALFIN1<---------ANAC58  --------->ZAT14 --------->ARR11(3)   ggcgagatcttggtcattgttgtggcggatcttggtggcgtaagcagagagtgtgtgcacgcatagtgatggatattgggtggtttggcatgaagacaca  23250400                                 --------->At4g35610                            <--------P --------->ATHB12                           <-------GAMYB                --------->MYB52(1)    <---------YAB1              ----------->HVH21  <---------At4g35610<---------YAB1                         <---------At4g35610              <---------ETT(1) <-----------RAV1(2)----------->GT1  <---------YAB1          --------->At4g35610   ataaactggtctgattccgaccggtttggggttgcagatgaagattggagaatggttattgatagaagtatgactagaaagattgtatttttaagctcca  23250500                                                                                                 ----                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                             <-------                                                                                             --------                                                                                             --------                                                                                             <-------                                                        <---------MYB46(3)                  ---------                          <---------AHL20(2)           *TSS                        --------->MYB59 <-          --------->MYB52(2)                   --------->ALFIN1   <-----------TBP  <---------TOE2(3)-     <---------AtMYB61<---------AHL20(2)     ----------->GT1      --------->AHL20(2)        <--------   tggtgttttggtttgtttgtttgtttattttttctaaaatgaagagaaggtgtatcagtggatgctgtttatatagggtttgatttaggtcaaaataaat  23250600                                                                                                   xx                                                                                                  xxx                                                                                                 xxxx                                                                                                 xxxx                                                                                                 xxxx      <---------ARR11(3)                                                                         xxxx      --------->ARR11(3)                                                                     xxxxxxxx     --------->CCA1(1)                                                                       xxxxxxxx     --------->RVE1(1)                                                                 xxxxxxxxxxxxxx --------->AHL20(2)                                                                   <xxxxxxxxxxxxxx <---------AHL20(2)                                                                   xxxxxxxxxxxxxxx ---->ATHB1                                                                           <xxxxxxxxxxxxxx ------ICU4                               --------->AHL20(1)                          <xxxxxxxxxxxxxx -----AHL20(2)                            <---------AHL20(1)                         <xxxxxxxxxxxxxxx ---->AHL20(2)                            <---------ARR11(3)                    xxxxxxxxxxxxxxxxxxxxx -----ATHB51                         ------------>CBF                           xxxxxxxxxxxxxxxx>smallRNA(i) ---->ICU4------>ZmHOX2a(1)    ------>ZmHOX2a(2)                              <xxxxxxxxxxxxxxxxxxxxxx --AHL20(2)                   <------ZmHOX2a(2)                               --------->ARR11(3) xxxx ->AHL20(1)                  --------->AGP1                                   <---------ARR11(3) xxxx ->AHL20(2)                  --------->ARR11(3)        ------------>CBF    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --AHL20(1)                  <---------ARR11(3)<---------AHL20(2)         xxxxxxxxxxxxxxxx>smallRNA(i) >AHL20(2)===========================HOX2a_HOX2a      <-----------GT1     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------YAB1                <---------AGP1  ----------->TBP --------->TOE2(3)<---------GLK1(2)  xxxx -------->YAB1              <---------CCA1(2)<---------AHL20(2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -AHL20(2)============================HOX2a_HOX2a  ----------->GT1    xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   tattaaaatatcctatatcgatttggatttagatctttgcacaatatataaaaatgtaacaattcttaactcttaagctagattttgggctaagttagac  23250700                               <xxxxxxxxxxxxxxxxsmallRNA(i)                             --------->MYB111(1)                             <---------MYB46(3)                             --------->MYB59                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                             <---------AtMYB61                            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                            <--------P                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <-----------------AGL1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(i2)     ------->GAMYB xxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <---------MYB52(2) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)   <---------MYB111(2) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------MYB55(2) xxxxxxxxxxxxxxx>smallRNA(si3)<------MYB83                                                 --------->ARR11(3) xxxxxxxxxxxxxxx>smallRNA(fl3)<------MYB46(1)                                             <------MYB46(1) xxxxxxxxx>smallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->ANAC58 xxxxxxxxxsmallRNA(fl3)   <---------MYB46(3)                                   --------->ANAC58 xxxxxxxx>smallRNA(fl3)   --------->ATHB12                                     <---------ALFIN1 xxxxxxxxsmallRNA(se3)   <---------TOE2(3)       ------>ZmHOX2a(1)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxsmallRNA(si3)  <---------YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------->ANAC46 xxxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxsmallRNA(i)                    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <xxxxxxxxxxxxxxx xsmallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)              <-----------------AGL1  <------MYB83 xxxxxxxxxxxxxxxxxxx>smallRNA(s2)    --------->MYB46(3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2) xxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ----------->RAV1(1)    ----------->GT1    ----------->RAV1(1) ---- xxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------GT1     ----------->HVH21   tacgtttctaatatggtatcagagcttatggttggtccaacaaacaaattcctacaaaaatggttttttacctatatggccacacaagtgataggtcttg  23250800                                                                                              -------                                                                                          --------->AHL20(1)                                                                                          <---------AHL20(1)                                                                                <----------DOF2                                  <---------LBD16                              ======================                               ------->TEIL                                    ------>ZmHOX2a(2)                               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           =======================                            --------->ANAC58                                  <------ZmHOX2a(2)                            --------->ANAC58                                 <---------ARR14(2)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             --------->ARR14(2)                            --------->ANAC46                                 <---------ARR14(3)                            --------->ANAC55(2)                              <---------ARR11(3)                            --------->ANAC55(1)                              --------->AGP1  <-------                   <---------MYB52(1)                                        --------->ARR14(3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                      --------->ARR11(3)          <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <------ZmHOX2a(1)xxxxxxxxxxxxxx          <---------ANAC58<---------ALFIN1       --------->AHL20(2)   ================HOX2a_HOX2a <--  <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ---------->DOF2                ===============HOX2a_HOX2a<---- xsmallRNA(i)<xxxxxxxxxxxxxxxxxxsmallRNA(se3)   --------->YAB1  <---------MYB46(3)   <xxxxxxxxxxxxxxx ------>ID1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<---------AHL20(2)  <---------YAB1 ----------->GT1 -   ttgtatttctaggcttggaccgtttctcacacgcatctcggaaaagcctattaaaatgttctatattggttaggattaagatctttgggtaatatataaa  23250900                                          --------->MYB59                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                        <<<<<<<<<MYB98                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       --------->GLK1(2)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxsmallRNA(i)  ----------->HVH21               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --->DOF2 <----------DOF2        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ====HOX2a_HOX2a               <---------ANAC58     --------->TOE2(3) ====HOX2a_HOX2a               <---------ANAC58  <---------ARR14(2) --AHL20(2)                  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxx>smallRNA(si3)    <----------DOF2      --------->ARR14(2) ----ZmHOX2a(1)            <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)             <---------AHL20(2) -----TOE2(3)              <---------ANAC58     <---------CCA1(2)       <---------AHL20(2) xxxxxxxxsmallRNA(le3)     <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------AHL20(2) ---------->GT1      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ---------->DOF2           <---------CCA1(2)   ggatgtgacaatctttaactcttgagatagctttcgggctaagttaggccatatccctaatataaaagtttttttttattttgttttgcatatattttct  23251000                                                                                      <--------ATHB1                                                                                      --------->ATHB51                                                                                      --------->YAB1                                                                                      <---------ICU4                                                                                      -------->HAHB4                                                                                     --------->ICU4                                                                                     <---------ATHB51                                                                                     <---------AHL20(2)                                                                                     <---------YAB1                                                                                   --------->YAB1                                                                                  <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                                 --------->ICU4                                                                                 <---------YAB1                                                                               --------->YAB1                                                                              <---------YAB1                                                                              --------->ICU4                                                                             <---------AHL20(2)                                                                             --------->AHL20(1)                                                                             <---------AHL20(1)                                                                             --------->AHL20(2)                                                                            --------->YAB1                                                                            <---------ICU4                                                                        --------->AHL20(2)          -                                                                        <---------AHL20(2)     ------        <---------AHL20(2)               <---------AHL20(2)             --------->AHL20(1)   <------MYB46(1)        --------->AHL20(2)               --------->AHL20(2)            --------->AHL20(2)    <------MYB83  <---------YAB1            --------->GLK1(2)   <--------P <-----------GT1 <---------YAB1<-----------RAV1(1)   cagtataattttaaatgatgttttaaaaacattctgtttcattttaaatggtagtttcaattttctatgtaaaattaattataattaataattgttggtc  23251100  Previous    Next  AGI:  At1g62770.1    Description:  invertase/pectin methylesterase inhibitor family protein. similar to PME1, pectinesterase inhibitor [Arabidopsis thaliana] (TAIR:AT4G12390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70315.1); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) Range:  from: 23249551    to: 23250555    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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