Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            <---------MYB46(3)                                                                                         <---------AtMYB61   <---------ZAT6                                                                        --------->ALFIN1 --------YAB1                                                                           <------NtERF2 ------>TOE2(3)                                                                         <-------GAMYB ----->YAB1                                                                            <---------DEAR4(2) ---->ATHB1                     <-----------GT1                                       <---------DREB2C(2) ------ICU4                  --------->AHL20(2)                                       --------->ALFIN1 ----->ATHB12                <---------ICU4                                           <---------DEAR3(1) -----HAHB4                  <---------AHL20(2)                                      <---------ABI4(1) ---->ICU4                  --------->ICU4             <---------DAG2        ------>NtERF2--------->MYB55(2) --->GLK1(2)         ---------->DOF2             --------->YAB1           --------->At4g35610      == -->YAB1  <---------------------WRI1      <----------DOF2  ----------->HVH21--------->RAP2.6(2)    <-   cattagagttacgaagaaactttcaaagtaattttttcaagtttctttctctcatcaccttctgacaattgacataagcggccaagaggcggtggtagtg  23065000                                                                                          ===========                                                                                          ------>ZmHOX2a(2)                                                                                         <---------GLK1(1)                                                                                         --------->GLK1(1)                                                                                        --------->ARR14(2)                                                                                        <---------ARR14(2)                                                                                        <---------AGP1                                                                                        --------->ARR11(3)                                                                                        <---------ARR11(3)            ------>ZmHOX2a(2)                                                     --------->ICU4            ===================================HOX2a_HOX2a                     <---------MYB52(1)          --------->ARR11(3)                                      ===============================HOX2a_HOX2a          <---------ARR11(3)                           <--------P ------>ZmHOX2a(1)     ------->TEIL        --------->ICU4                        <------ZmHOX2a(1) ----------->RAV1(2)  <---------WOX13(1) ==================HOX2a_HOX2a              --------->ALFIN1   ------>ZmHOX2a(1)  <---------YAB1 -----ZmHOX2a(1)    ----------->HVH21   <------ZmHOX2a(1)      ==================================HOX2a_HOX2a   aggatgagccatgatcttggccttgacagaggctgaagaagaggaagaggagcaagggttgattcctcctgcaacgatttcgttatgatggatctccatt  23065100            --------->At4g35610          <------ZmHOX2a(1)           --------->ANAC58         --------->At4g35610          --------->ANAC46             <------ZmHOX2a(1)  --------->DAG2       <-----------RAV1(2)        >>>>>>>>>TBF1           <---------ANAC46   <---------WOX13(1)    <-  <---------ARR14(2)     <------ZmHOX2a(1)                <---------ANAC58 --------->ATHB12      <---  --------->ARR14(2) <------ZmHOX2a(1)--------->ANAC58    <---------ANAC58<---------YAB1  --------->ZAT18 ================HOX2a_HOX2a   >>>>>>>>>TBF1<----------DOF2      --------->ALFIN1    ---------->DOF2   agagaataggcaggagcacaagaggaaggagaagaagaagaagcaactttgttcttagttccttggggaggagctagtgattgaagaaaaagggaactac  23065200                                                                                             <------NtERF2                                                                                            ------>NtERF2             <---------WOX13(1)                                                             <--------          ----------->HVH21                                                                 <--------        <---------ANAC58                                                                   <---------DEAR3(1)        <---------ANAC46                                                                   --------->ATERF1(2)        <---------ANAC58                                 --------->YAB1                    <---------RAP2.6(2)      <---------MYB46(3)                                 <---------ICU4                    <---------ATERF1(2)     <---------AtMYB61                                  <---------YAB1               --------->ATHB12   <------MYB83  --------->GLK1(1)                     <---------ARR11(3)           <---------YAB1   <------MYB46(1)         ------->GAMYB               --------->ARR11(3)           --------->ICU4   <---------MYB46(3)      --------->YAB1             --------->YAB1           --------->TGA2(1)    -  <---------AtMYB61       --------->MYB46(3)         <---------YAB1            <---------TGA2(1) ---- ----------RAV1(1)   --------->YAB1      <---------MYB46(3)                    <---------bZIP60(1)  < -------DOF2 <---------ANAC46 --------->YAB1  <---------TOE2(3)                --------->bZIP60(1) <-   tttgttggtggtgtgactgatatgcataaccatcatgttcttgttgttgatgttgatgatcatgaccatgatgttgatgtgatgtcatgatgggcggcat  23065300      --------->YAB1      --------->ATHB12     <---------YAB1                          --------->ANAC58   --------->YAB1                      ------>NtERF2   <---------ICU4                      --------->LBD16  <---------YAB1                      --------->LBD16 -ATERF1(1)                    <---------YAB1--------->ANAC58             <---------ALFIN1 -RAP2.3(1)            --------->AtMYB61<------NtERF2                    --------->MYB46(3) -------->YAB1    --------->TOE1(1)   --------->ANAC46            <-------GAMYB ----->YAB1<------ZmHOX2a(1)<---------YAB1 ---------->DOF2       <---------MYB46(3) ---------ICU4    --------->TOE2(1)  --------->LBD16             <-----------RAV1(1)             ---- --------YAB1   --------->MYB52(1)   <---------LBD16          --------->ALFIN1            <----------DOF2   catcatcatcataggacacatcggaccatcactattatccccggcaaaagccattggacaagaagtgctgttggaaccactctccatcttctctttctct  23065400                                                                                     <------NtERF2                                                                                    >>>>>>>>>>>>>>>>>LFY                                                                                   --------->RAP2.3(3)                                                                                   --------->RAP2.3(2)                                                                                  --------->ATERF1(1)        <---------YAB1                                                           <---------ATERF1(1)      --------->YAB1                                             ----------->GT1--------->ARR14(2) --      <--------HAHB4  <----------DOF2                   ------------------------>ANAC81<------------CBF     <---------YAB1  <---------ANAC58              ----------->GT1              <---------ARR14(2) <-   <---------ZAT6    <---------ANAC58        --------->AHL20(2)---------->DOF2 <------ZmHOX2a(1)   -- ----->ZAT6     <----------DOF2       --------->YAB1--------->YAB1       ---------->DOF2 ----------->GT1   cactagtattattattcactttggctttgctatatagctatgagaaataaaaaatgaaaataacataaagaaaaaaaaagaggagcccccattgtaaata  23065500                                                            <---------------AGL15                                                            --------------->AGL15                                                           --------->TOE1(3)                                                 <------------CBF                                                --------->ATHB12                                               --------->AHL20(1)                                               <---------AHL20(2)      --------->ANAC58                    --------->YAB1             <---------AHL20(1)      --------->ANAC58             ------------>CBF                  --------->AHL20(2)      --------->ANAC55(2)            --------->TOE2(3)     --------------->AtSPL8   --------->TOE2(3)           --------->YAB1         <---------TOE2(3)     <---------GLK1(1)          <---------YAB1          <---------------AtSPL8--------->GLK1(1) --------->MYB52(1)  -------        --------->YAB1<---------YAB1        <---------AHL20(2)         <---------ANAC55(2)   <------- ------->ZAT2<---------YAB1      ---------->DOF2<---------AHL20(2) ----------->GT1      ------->TEIL --------At4g35610<---------ARR11(3)       --------->AHL20(2)  ---------->DOF2 <---------ANAC46   <-- ------->At4g35610--------->ARR11(3)      ----------->TBP  ----------------->AGL2      <---------CCA1(2)   cagctagcatttatcatcaatatcatgaaacacattaaagtactataaatttattgggaaaccctaaaagagtaagtaactgtgtgtgtgtatctatggt  23065600       --------->AHL20(2)       --------->ATHB12       <---------AHL20(2)       <---------ICU4       --------->ATHB51                                       <----------DOF2      --------->ICU4                                          <---------DAG2   <---------AHL20(2)                                   <---------At4g35610   --------->AHL20(2)             <---------TOE1(2)     --------->ZAT2  --------->AHL20(2)              --------->LBD16     --------->YAB1  <---------AHL20(2)             --------->LBD16   --------->WOX13(1)  <---------AHL20(1)             <---------LBD16  --------->MYB46(3)                                < ---->GT1                       <---------LBD16  ------------>CBF        --------->YAB1           <-- --TOE2(3)            --------->DAG2           --------->REM1(1)      <------------CBF  <---------ZAT6 -------AHL20(2)     ---------->DOF2      <---------YAB1--------->At4g35610             <---------YAB1   ttaatttaattatttgaaaatgcaaaagtggtctcccgggatttatgcttcaacaatcagcttccttttccacattgaaaattctaaatagtgatagtta  23065700                                                       <---------YAB1                                                     <---------------AGL15                                                     --------->YAB1                                                     --------------->AGL15                                                    <---------YAB1                                                  --------->YAB1                                                  <---------ICU4                                                  -------->ATHB1                           <---------LBD16       <---------ATHB51              --------->At4g35610                --------->AHL20(2)   <----------DOF2              <---------At4g35610            <------ZmHOX2a(1)<------ZmHOX2a(1)           --------->At4g35610             <---------TOE1(3) ----------->GT1                      ---           <---------At4g35610<------ZmHOX2a(1)  <---------AHL20(2)   <---------DAG2           ------ ---------ANAC46 --------->At4g35610       <---------TOE2(3)----------->GT1  <------ZmHOX2a(1)------- -------LBD16----------->RAV1(1)----------->GT1  --------->ICU4    <-----------GT1       <---------AHL20(2)   tgggggagagggaagcagcagaagagagaccaggaagataaatctaaggaaattattataaataggaaataactttttaggagaaacttattttaaaaaa  23065800    --------->DAG2               <-----------RAV1(1)                       <---------GLK1(1)   ---------->DOF2        <---------ANAC46                     <---------At4g35610           <------- -------->GT1             <---------ANAC58                     --------->At4g35610        <----------DOF2 --->DAG2                 <---------ANAC58  <-----------GT1 <---------At4g35610          <---------DAG2 --->DOF2 <---------ARR14(2)    ------>ZmHOX2a(2)<----------DOF2        <---------YAB1  -------------   gtgtaaaaagcagacatggacagaggttgtgtgatctgtgggttcttaactcttttgtgttcttctgctgaaatatgatttctcatttatgccttttcgg  23065900  Previous    Next  AGI:  At1g62360.1    Description:  STM (SHOOT MERISTEMLESS); transcription factor. Identical to Homeobox protein SHOOT MERISTEMLESS (STM) [Arabidopsis Thaliana] (GB:Q38874;GB:Q8RXJ1;GB:Q9MAV3); similar to KNAT1 (BREVIPEDICELLUS 1), transcription factor [Arabidopsis thaliana] (TAIR:AT4G08150.1); similar to shoot meristemless [Cardamine hirsuta] (GB:ABF59514.1); contains InterPro domain KNOX1; (InterPro:IPR005540); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro:IPR005541); contains InterPro domain Homeo Range:  from: 23062247    to: 23065387    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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