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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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           <-----------ARR10
           --------->ARR14(2)                                                                  -----
          <---------GLK1(2)                                                                    -----
      ------>ZmHOX2a(1)             <---------ZAT6                                             -----
     --------->TOE2(2)         --------->YAB1                                              ---------
     --------->TOE1(2)         <---------ICU4                                          <---------ANAC58
  <---------ARR14(2)          <---------ATHB12                                         <---------ANAC58
  ------>MYB83                <---------YAB1                                       <---------ANAC58
  --------->ARR14(2)        --------->YAB1          --------->GLK1(2)              <---------ANAC58
  ------>MYB46(1)      --------->MYB46(3)          <---------GLK1(2)          --------->At4g35610
------>REM1(1)       <---------ARR14(2)        ---------->DOF2                <---------At4g35610
-------HVH21         --------->ARR14(2)    --------->AtLEC2                   --------->ZAT2------>ZmHOX2a(1)
 
tcacctatcctccgattcttcgcataaccactaatcatagtgttccatgaaaaagaatcccttgaaggcatttcatcaaacagcttccttgcttcctcaa  23003100
          --------->ANAC46                                                                     <----
   ------>MYB83                                                                          <---------ANAC58
   ------>MYB46(1)                            <-----------HVH21                       --------->LBD16
 <---------MYB59                 --------->YAB1                                      <---------ANAC58
 --------->TOE2(3)              <---------ATHB12      <---------ARR11(3)             <---------ANAC58
---->ANAC58                --------->ANAC46  --------->ANAC46                        --------->ANAC55(2)
---->ANAC46--------->AtMYB61--------->LBD16  --------->bZIP60(2)                     <---------ANAC46
---->ANAC58<---------ALFIN1--------->LBD16   --------->ANAC58                     --------->ARR14(2)
>TOE2(3)--------->ANAC46 <---------LBD16     --------->ANAC58          <---------ANAC46  <---------ANAC58
 
gaaacctaatcccaccacatgaaacataccccgaaatcatcgtgttccaagtcacaacatctctcttaggcattacgtcgaacagtttccgtgcttgatt  23003200
                --------->ARR14(2)
                --------->MYB52(1)
           <-----------GT1
      <---------DAG2                                                      --------->ARR11(3)
   --------->ANAC46                                                       <---------ARR11(3)
   --------->ANAC58                   --------->ANAC46                   --------->RVE1(1)
   --------->ANAC58                   --------->bZIP60(2)     <---------GLK1(2)                   --
 <-----------GT1-------->P--------->YAB1            ------>ZmHOX2a(1)    --------->CCA1(1)      <---
---TEIL<----------DOF2   <---------YAB1<-----------HVH21      --------->ARR14(2)     <---------DEAR3(1)
 
catttcacgccttttcacatacccgcttatcatcgtattccatgtcactgtgttcctcgcttccagtttctcaaaaatatctctagcttcggcgatatac  23003300
         ----------->RAV1(2)
  ------>ZmHOX2a(2)
 <------ZmHOX2a(2)
<---------ARR14(2)
<-----------ARR10                                 <---------WRKY18(1)
--------->ARR14(2)                 --------->ANAC58
<---------ARR11(3)    <----------DOF2         <---------ZAT2
------->LBD16    <-----------GT1   --------->ANAC58 --------->ANAC46            --------->ANAC46
------LBD16 ----------->GT1 --------->MYB52(2)--------->ZAT2        ---------->DOF2
 
cccgatcttatcatctggtttaactctttgttcgtcgctcgaaaacccaagcttgacgaaactgaagtagagaaagagtttgcacataataaacacttaa  23003400
                                                                    --------->RAP2.3(1)
                                                                    <------NtERF2
                                                                   --------->LBD16
                                                                   <---------ATERF1(1)
                                                                  <---------DEAR3(1)
                                                                  --------->DEAR3(1)
                                                                  <---------ATERF1(2)
                                                                 <------NtERF2
                                                                 --------->ATERF1(1)
                                                                 --------->RAP2.3(1)
                                                                 <---------LBD16
                                                                ------>NtERF2
                                                                <---------ATERF1(1)
                                                                <---------RAP2.3(1)
                                                               <---------DEAR3(1)
                                                               --------->DEAR3(1)
                                                              <------NtERF2
                                                              --------->ATERF1(1)
                                                             <---------ATERF1(1)
                       =================================HOX2a_HOX2a------>NtERF2
                       ------>ZmHOX2a(1)                     <-----------HVH21
                       --------->LBD16 <---------HSFC1(2)   <---------DEAR3(1)
                       =====================================HOX2a_HOX2a
                    ------>MYB46(1)--------->ANAC46  <------ZmHOX2a(2)
               <---------ALFIN1    --------->ANAC58 <---------ARR14(2)              <------ZmHOX2a(2)
      <---------WOX13(1)       <-----------GT1   ------>ZmHOX2a(2)--------->ATERF1(2)           ----
   <---------YAB1   ------>MYB83   --------->ANAC58 --------->ARR14(2)          <---------At4g35610
 
gacaagacgattgatacaacaccttcctgaaaattaacaagacacttcgtgatcggatcatcgtcgtcgccggcgaaatttgcagcgatcaaaaactaaa  23003500
                                  <------MYB46(1)                                              <----
                                 --------->MYB59                                               <----
                         <---------ANAC55(2)                                              --------->ATHB12
                         --------->At4g35610                                             <---------ATHB12
                         ----------->GT1<---------At4g35610                            --------->GLK1(1)
                        --------->MYB59 --------->At4g35610                            <---------GLK1(1)
                     <-----------HVH21<-----------RAV1(2)                 <---------YAB1 --------->ICU4
        <----------DOF2<-----------RAV1(2)   <---------YAB1          <-----------GT1--------->LBD16
------>DOF2         <---------ZAT6<------MYB83            --------->KAN4(2)       <---------LBD16 --
 
aaagcctctagctttgaaaattagagtcaggtaaatttggttcagatgatgatgtaatggacattcttcggtttaccatgtttgaaccggaaatcatttg  23003600
                                                            ----------->ARR10
                                                          ------>ZmHOX2a(1)
                                                        ----------->RAV1(2)
                                  ------>MYB83  ------>NtERF2               <-----------HVH21     <-
--MYB46(1)                        ------>MYB46(1)  ----------->HVH21    --------->GLK1(2) <---------
--MYB83  ----------->GT1 --------->YAB1    <----------CDC5--------->LBD16  --------->WOX13(1)     --
---------->CBF         <------------CBF   ----------->RAV1(2)  --------->CCA1(2)--------->At4g35610<
 
gttcaattcagatagtaaaatgtgtctattgtaaaccaaattagcctctgaggcctgactcctgagatttggaagaatcagtcagtggaatggaattgat  23003700
               <---------At4g35610
               --------->At4g35610
               ----------->GT1
             <-----------RAV1(2)
            <---------MYB52(1)                                           <---------LBD16
  <---------GLK1(2)                                                    <---------ARR14(2)
--------At4g35610                                                      --------->ARR14(2)
---CBF     <-----------HVH21   <---------At5g28300         ------------>CBF--------->LBD16
------->At4g35610             <-----------GT1 <---------MYB52(1)      <---------GLK1(1)        -----
---------MYB52(1)       <---------YAB1       ----------->GT1          --------->GLK1(1)      <------
 
cagttgattctcacagtcaggtgaattttgattttactgtgtttaaaccggtaataactcggttcaattcagcatttccggttttatagtatttgaaccg  23003800
                                                                           ------>ZmHOX2a(2)
                                                                         --------->ARR11(3)
                                                                         <---------ARR11(3)
                                                                      <--------P
                                                                      <---------WOX13(1)
                                                                     <-------GAMYB
                                     --------->HSFB2a(2)             <---------ANAC58
                                     <---------HSFB2a(2)             <---------ANAC58              -
                                     <---------------AGL15          <---------MYB46(3)             <
                                     --------------->AGL15          --------->MYB55(2)        <-----
                                <---------HSFC1(2)                  <------MYB83         --------->AHL20(1)
   <---------GLK1(1)            --------->HSFC1(2)                  <------MYB46(1)      <---------AHL20(2)
---->LBD16      ----------->GT1 <---------HSFB2a(1)             <---------MYB46(3)       --------->AHL20(2)
---LBD16 <-----------HVH21      --------->HSFB2a(1)           <---------ZAT14      ------->GAMYB   <
 
ggtttgatatcaggtcagatagtaattagagtagaaatttctacaaattgtattacatagtagtctgtagttggttgatcttccaactgaaattttttat  23003900
       ----------->GT1
-------->ZAT2   <---------DAG2                   <---------AtMYB61                     <----------DOF2
---------At4g35610      <-------TEIL           <----------DOF2                         =============
------GT1 <-----------GT1            ----------->GT1                    --------->ANAC46
---------ZAT2   <----------DOF2 <---------AHL20(2)          --------->ARR14(2) <---------AHL20(2)
 
ccagctagttttgtaactacttttacatacattattttatgggtaattagctttggtttacaagtttcgccatacacgatgtttatttgtcttttggacc  23004000
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AGI:  At1g62260.1   
Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02750.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47436.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67319.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:  from: 23001491    to: 23003461    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g62262.1   
Description:  SLAH4 (SLAC1 HOMOLOGUE 4). similar to SLAH1 (SLAC1 HOMOLOGUE 1), transporter [Arabidopsis thaliana] (TAIR:AT1G62280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69647.1); contains InterPro domain C4-dicarboxylate transporter/malic acid transport protein; (InterPro:IPR004695)
Range:  from: 23003822    to: 23005758    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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