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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                              --------->ARR11(3)
                        <---------ANAC58
                        --------->ANAC55(2)
                        <---------ANAC46
                        --------->ANAC58
                        --------->ANAC58
                        <---------ANAC58
                        <---------ANAC55(2)                   --------->ATHB51
                        --------->ANAC55(1)                   <---------ICU4
                        <---------ANAC55(1)                   <---------AHL20(2)
                   <---------ICU4                             --------->AHL20(2)
                   --------->YAB1                            <---------YAB1
                  --------->AHL20(2)                         --------->ICU4
-->AHL20(1)       --------->ICU4                        ----------->GT1                      <------ZmHOX2a(1)
---AHL20(1)       <---------ATHB51               --------->AHL20(2)                         --------
---AHL20(2)       <---------AHL20(2)             --------->AHL20(1)           --------->TOE2(3)
-->AHL20(2)     --------->YAB1<---------ARR11(3) <---------AHL20(2)          ----------->GT1<-------
--AHL20(2)    --------->AHL20(2) <---------DAG2 --------->AHL20(2)     --------->TOE1(2)   ---------
->AHL20(2)    <---------AHL20(2) <----------DOF2<---------AHL20(2)<---------AHL20(2)---------->DOF2
 
tttgaccaaaaacataaaaaaataattacgtaagagcttttttggcagaaaataatttagagtaattatttattccttcgacgttaaaaaagaataggaa  22923100
   ----------->GT1                                         <------ZmHOX2a(1)
  <---------YAB1--------->ATHB12                         <---------TOE2(3)
--->GT1<---------AHL20(2)    <---------YAB1  <----------DOF2
---ID1--------->AHL20(2)     <---------TOE2(3)           <---------TOE1(3)
-->GT1<---------AHL20(2)    --------->YAB1   ------>ZmHOX2a(1)
 
aaaatatgtttaaattgcatcattcgaccaataagattagaactcatcctttttttttttaaggatatatagaattcatcactgaatacatgtttttatc  22923200
                           ------>ZmHOX2a(2)
                          --------->CCA1(2)
                          <------ZmHOX2a(2)        ------>ZmHOX2a(2)
                         xxxxxxxxxxxxxxxx>smallRNA(s)   <-----------GT1
                         <---------AGP1           <------ZmHOX2a(2)
                         <---------ARR14(2)      --------->AGP1
                         --------->AGP1          <---------ARR14(2)
         ---------->DOF2 --------->ARR14(2)      <-----------ARR10
     --------->ANAC58    <---------ARR14(3)      --------->ARR14(2)         <<<<<<<<<TBF1
     --------->ANAC58    --------->ARR14(3)      --------->ARR11(3)      <<<<<<<<<TBF1
     --------->ANAC46    --------->ARR11(3)      <---------AGP1 <<<<<<<<<TBF1           ------>ZmHOX2a(1)
    <---------TOE2(3)    <---------ARR11(3)      <---------ARR11(3)   <<<<<<<<<TBF1     ============
   --------->MYB52(1)   <---------GLK1(1)       <---------CCA1(2)  <<<<<<<<<TBF1  ------>ZmHOX2a(1)
 
ccaaattaacgcaaaagagagaactcgagatctgggcatagcgactcactcagatctatacaccttcttcttcttcttcttcttcctcttcctcttcgct  22923300
                           ------->GAMYB
                          <---------MYB55(2)
                          --------->MYB46(3)                                                    ----
                 ------>ZmHOX2a(2)                                                   ------------>CBF
                 ==================================HOX2a_HOX2a                   <-----------RAV1(1)
                 =============================HOX2a_HOX2a                      <------------CBF<----
           --------->At4g35610              =================================HOX2a_HOX2a      <-----
           ----------->RAV1(2)              ------>ZmHOX2a(1)                <---------YAB1   ------
           <---------At4g35610 <------------CBF<---------YAB1         ------>ZmHOX2a(2)       ------
========================HOX2a_HOX2a    ------>ZmHOX2a(1)             <---------At4g35610      <-----
 
tcgttcgtaaactcatctgatctgtggtaaccaccattgttcctctccttacgatttcgaatttctgttttgatctcactaccattgttgcaatttagat  22923400
     <------------CBF
   <---------YAB1
-->ZmHOX2a(2)                                                <---------YAB1
--ZmHOX2a(2)                                       <---------ANAC58
----ARR11(3)         <---------DAG2                <---------ANAC58        <---------YAB1
--->ARR11(3)         <----------DOF2        <-----------TBP  <---------TOE2(3)
--->AGP1   <---------ANAC58           ------>ZmHOX2a(2)   --------->ICU4--------->GLK1(2)       ----
----AGP1   <---------ANAC58         --------->ARR11(3) ----------------->AGL1     ---------->DOF2---
 
ctatttctaattgttcgtgattcgcttttttttttctgtgatctggtttttgtagagtgccattatcgttgagagattatgttgacaaagttcgaaacca  22923500
                                                                           <---------At4g35610
                                                                           --------->ZAT2
                                                                           <---------ZAT2
                                                                           --------->At4g35610
                                                                        ------>ZmHOX2a(2)
                                                                    ----------->HVH21
                                                                  --------->ANAC55(2)
                                                                  <---------ANAC58
                                                                  <---------ANAC55(1)
                                                                  --------->bZIP60(1)
                                                                  <---------bZIP60(1)
                                                                  <---------ANAC58
          --------->MYB52(1)               --------->ARR14(2)     <---------ANAC55(2)
 --------->MYB52(1)                        <---------GLK1(2)      <---------ANAC46                 <
------>DOF2                       --------->MYB46(3)      <<<<<<<<<<<<<<<<<LFY<---------LBD16<------
------>DAG2              <-----------GT1   <---------ARR14(2)  --------->ALFIN1          <---------SPL7
 
aaagtaacagagttaagggactgagttttcaccctaaacgaccatggattctcgcgagtttgcacagtggcgtgatccagctctgggattatcgtatggg  22923600
             <-------TEIL
            --------->ARR14(1)      <---------ANAC58
           --------->ARR11(1)       --------->MYB52(2)
           <---------GLK1(2)        <---------ANAC58                                               -
     ------>ZmHOX2a(2)      <------ZmHOX2a(1)                                            --------->AHL20(2)
     ==============================HOX2a_HOX2a                                           <---------AHL20(2)
    <---------WOX13(1) --------->ANAC58                                          ----------->GT1   <
----------DOF2         --------->ANAC58  <---------ANAC46                     --------->LBD16      <
---------AtSPL8        --------->ANAC46  <---------ZAT6                     <---------LBD16  <------
 
tactttgatcgatagattcgacgaacacgaaggacctgttcgtggtgttcatttccacaattctcagcctctcttcgtctccggaggtatatataattcg  22923700
--------->YAB1
--------->ATHB12                      ------>ZmHOX2a(2)
-------->ATHB1                      <---------ARR11(3)          --------->YAB1
<---------ICU4                      --------->ARR11(3)         --------->ICU4              <--------
-------->ICU4                       ------->TEIL    ---------->ID1       ------>ZmHOX2a(2) ---------
---------ATHB12                     <---------AGP1<-----------RAV1(1)  <---------ARR11(3) <---------YAB1
---------YAB1              ---------->DOF2        <---------MYB46(3)   --------->ARR11(3) --------->ICU4
---LBD16              --------->At4g35610     --------->ATHB12 <---------ATHB12    <-----------RAV1(2)
 
gaatcattgttagtgaaatcgtataagctcaaaagaatggatctatacatgatttgttgcattacaatgatgttgatcttgatattgcaggggatgatta  22923800
                                                                          <-------TEIL
                                                                      --------->ANAC58
                                                                     --------->SPL7
                                                                    <---------ALFIN1
                                                                   <---------SPL7
                                                                   --------->LBD16
                                      <-----------GT1          --------->ARR14(2)
                                  <----------DOF2              <-----------GT1
                                 <---------DAG2                <---------ARR14(2)      <---------ICU4
                            --------->At4g35610              ----------->ARR10        <---------YAB1
                            --------->ZAT2                  --------->AHL20(2)      <---------ICU4
   ---------->DOF2          <---------At4g35610         <---------YAB1--------->ANAC58--------->ICU4
-ICU4    --------->ALFIN1 <-----------RAV1(2) --------->HSFB2a(2) --------->ANAC46  --------->YAB1
>ATHB12--------->ALFIN1 --------->AtMYB61     <---------HSFB2a(2)<---------LBD16   <---------ATHB12
 
caagattaaagtgtggaactacaaaaaccacaggtgccttttcactcttctagggcatcttgattatatccgcacggttcagttccatcatgagtaccca  22923900
                                               <---------ATHB12
                                --------->ARR14(2)
                             --------------->AGL15                                           <------
                             <---------------AGL15                                           <------
                            <-----------------AGL3                                           <------
                            ----------------->AGL3                                   --------->ICU4
                            <-----------------AG                                   <--------HAHB4
                            ----------------->AG <---------LBD16                   -------->ATHB1
                            <-----------------AGL1                                 <---------ICU4
                            ----------------->AGL2<---------ANAC55(2)              --------->YAB1
                            <-----------------AGL2--------->ANAC58                <---------ATHB12
                <---------YAB1  <---------ARR14(2)--------->ANAC55(2)             --------->ICU4
                --------->ICU4--------->LBD16--------->WOX13(1)                   <---------YAB1
   <---------YAB1           ----------------->AGL1--------->ANAC58    --------->ATHB12  <---------YAB1
 
tggattgtgagtgcaagtgatgatcaaactatccgtatatggaactggcaatcacggacttgtgtttctgtattgactggtcacaatcattatgttatgt  22924000
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AGI:  At1g62020.1   
Description:  coatomer protein complex, subunit alpha, putative. Identical to Coatomer subunit alpha-1 [Arabidopsis Thaliana] (GB:Q94A40;GB:O80706); similar to coatomer protein complex, subunit alpha, putative [Arabidopsis thaliana] (TAIR:AT2G21390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61059.1); similar to coatomer alpha subunit-like protein [Lotus japonicus] (GB:CAE45585.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48436.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Coatomer, alpha subunit, C-terminal; (InterPro:IPR010714); contains InterPro domain Cytochrome cd1-ni
Range:  from: 22923479    to: 22927689    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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