Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------AHL20(2)                                                     <---------AHL20(2)        <---------ANAC46                                                            --------->AHL20(2)        ----------->GT1                                                             <---------AHL20(1)   -------->HAHB4                                                                   <---------AHL20(2)   <--------ATHB1                                                             <-----------GT1   <---------ICU4                                                         --------->AHL20(2)        <   --------->ATHB51                                                       <---------AHL20(2)       --  <---------ATHB51                                                        --------->AHL20(1)   <-----  <---------YAB1                                                          --------->ARR11(3)   ------  <---------AHL20(2)                                                      <---------AHL20(1)   ------  --------->AHL20(2)                                                 --------->AHL20(2)        <-----  --------->ICU4                                      --------->ANAC58    <---------ARR11(3)   ------ -------->YAB1--------->AHL20(2)               <---------------AGL15--------->AHL20(2)        ------- ---HSFB2a(2) --------->AHL20(1)               --------------->AGL15<---------AHL20(2)       -------- -->HSFB2a(2) <---------AHL20(1)  --------->AHL20(2)  --------->ANAC58   --------->AHL20(2) <<<<<<<<<RAP2.2   aaaaataattgtgtaaaatattagaactaaattcaaataaaaacaaatacaaatttaagcaaaacaatatttaaaatatatttcaattttttttagatat  21544000                                        <---------AHL20(2)                                    --------->YAB1                                   <---------AHL20(2)                                   --------->AHL20(2)                                <---------AHL20(2)                                --------->AHL20(2)                               --------->AHL20(2)          --------->AHL20(2)   <---------AHL20(2)       <---------AHL20(2)   <---------AHL20(2)      <---------AHL20(1)    <--------HAHB4      --------->AHL20(1)    --------->YAB1                                         xxxxxxxxxxxxxxxxxx     <---------AHL20(2)     <---------ICU4                                         <---------AHL20(2)   <---------AHL20(2)       -------->ATHB1                                         --------->AHL20(2)   --------->AHL20(2)       -------->HAHB4      <---------AHL20(2)                --------->AHL20(2) ---------AHL20(2)          --------->ATHB51    --------->AHL20(2)                <---------AHL20(2) ------->AHL20(2)          <---------YAB1  <---------YAB1                    --------->TOE2(3) ----AHL20(1)              <---------ATHB51<---------AHL20(2)         --------->AHL20(1) --->AHL20(2)              --------->ICU4  --------->AHL20(2)         <---------AHL20(1)  xxxxxxxxxxx --->AHL20(1)            --------->YAB1--------->YAB1    <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ----ARR11(3)           <---------AHL20(2)--------->YAB1<---------AHL20(1) --------->ARR11(3) --->ARR11(3)           <---------YAB1<---------YAB1 --------->YAB1--------->AHL20(2)   <-----------GT1 -->CCA1(2)             --------->AHL20(2)--------->TOE2(3)        <---------AHL20(2) <---------AHL20(2) ->ARR11(3)<---------AHL20(2) <---------YAB1 --------->YAB1  --------->YAB1<---------ARR11(3)   attatatatatatttaatacacttatataattattaatttataatattaataaaatcatatatttataaaaaaatattatcttattaatttatcgatttg  21544100                                                                           --------->ATHB12                                                                          --------->ICU4                                                                        <------------CBF                                              --------->AHL20(2)--------->AHL20(2)                                              <---------AHL20(2)<---------AHL20(2)                                           --------->AHL20(2)  <---------AHL20(1)                 ------------>CBF          <---------AHL20(2)  <---------AHL20(2)                --------->YAB1            --------->AHL20(2)   --------->AHL20(2)                <-----------GT1           <---------AHL20(2)   --------->AHL20(1)             --------->YAB1           <---------YAB1          <---------------AGL15          --------->TOE2(3)           <---------AHL20(2)    --------->AHL20(2)             ----------       <-----------GT1             --------->AHL20(2)       <---------AHL20(2)            <---------- xxxx>smallRNA(s2)                 <---------AHL20(2)      <---------AHL20(2)    <---------YAB1 xxxxxxxxxxxx>smallRNA(si3)    <---------GLK1(2)           --------->AHL20(2)    ------------>CBF<---   tgtcattttttacattaatcacaattcagaacagaatttttttattaatttataaaacttattaatttatttagtattgatttatcaatgttttacaata  21544200                                              <---------HSFB2a(2)                                              --------->HSFB2a(2)          --------->YAB1                                        <-----------ARR10        --------->AHL20(1)   --------->GLK1(1)                                        --------->ARR14(2)       <---------AHL20(2)   <---------GLK1(1)   --------->WRKY38(1)                  --------->GLK1(2)        <---------AHL20(1)  <---------ARR11(3)   --------->WRKY12                     --------->ARR11(3)       --------->AHL20(2)  --------->ARR11(3) -->CBF                 ---------->DOF2 <---------ARR14(3) <------ZmHOX2a(2)     ---------->DOF2    < -GT1             ---------->DOF2       <---------ARR11(3)<---------ARR11(3)<---------ARR11(3)      - --------GT1 ---------->DOF2            --------->ARR14(3)--------->ARR11(3)--------->ARR11(3) ------   aaccgttgaacacataaaagaaaagtcaaagttttctgccaaaatcttcttgaagattacgatctaattaattacaaagatactaaagatttcttcatat  21544300                                 --------->At4g35610                            <---------ANAC58                            <---------ANAC58                      --------->ATHB12                   --------->bZIP60(2)         --------->YAB1<------------CBF                                        <---------ARR14(2) <---------YAB1    --------->ANAC46                                <---------MYB46(3)              -- ---------ARR11(3) --------->ANAC58                             <------------CBF                <---- -------->ARR11(3) --------->ANAC58                    <----------DOF2 --------->MYB52(2)   <-------- --->AHL20(2) <-----------GT1    <---------At4g35610   --------------------->WRI1 --------->ICU4-----   aatatcatcgataatattaccaagtcattgacttgagctacaaactctcttccccttctttgtttgtattggttatttgcagaaatgttgatattcacta  21544400                           <---------YAB1 --------->LBD16           --------->ICU4                                      <------ZmHOX2a(1) ------->ANAC46        <-----------HVH21                            <---------HSFB2a(2)       ------- -----ZAT14      <---------ZAT2                                 <---------AtLEC2       <---------MYB46(3) ---GT1          --------->ZAT2                       ---------->TaMYB80  <------ZmHOX2a(1)   <------ ---->ZAT14  --------->ANAC46       --------->ZAT6 ----------->GT1  --------->HSFB2a(2)<-----------RAV1(1)   taccgcagtttttcttcgcagcatgggtcatggttgtatcactacaaatgcaagggtatataagttgcatcgagaaggagaggaagggattgttggagct  21544500                                                                               --------->ALFIN1                            --------->ATHB12                                 <---------ANAC58                           <---------YAB1                                    <---------ANAC46                      <-------TEIL                                           <---------ANAC58    <---                   <---------KAN4(1)                   <---------MYB46(3)  --------->ZAT14       <---                   --------->KAN4(1)                   <-----------RAV1(1) --------->ZAT18       <---              --------->ANAC58  <------MYB46(1)       <---------YAB1       <---------ZAT14       <---  <---------ANAC58<---------KAN4(2)                   <---------WOX13(1)  --------->ALFIN1       ----  <---------ANAC58---------->TaMYB80        --------->ANAC58           --------->DAG2        -------- -->At4g35610 --------->ANAC58  <------MYB83--------->ANAC58        ================================= ---At4g35610 --------->ANAC46<---------WOX13(1)    --------->ATHB12---------->DOF2  ------>ZmHOX2a(2)   caaggcttatgtgaacaaggaatattcatatgattggtctaatgacacgaagagtgattgttgccgatgggaaagagtggagtgtgatcgtacaagtgga  21544600     ------>ZmHOX2a(2)    --------->At4g35610                          <---------ARR11(3)    <---------At4g35610                          --------->ARR11(3) ----------->HVH21                         --------->LBD16                         ------>NtERF2 ------ANAC58                              ------>ZmHOX2a(1)                      <---------ZAT18 ------ANAC58                              <---------YAB1                         --------->LBD16 ------ANAC46                            --------->YAB1                          <---------ANAC58 ------TGA1a                           <---------ARR14(2)            <----------DOF2  <----------DOF2 ----->TGA1a                        ==============HOX2a_HOX2a  <-----------GT1   <---------ANAC46 ->ALFIN1                           ------>ZmHOX2a(2)   <---------ANAC58         <---------ANAC58 ======bZIP_DOF         <---------ATHB12<---------ATHB12<---------ANAC58        <---------LBD16   <--   cgtgtgatcggcctcttcttgaatcaaacattcagtgatccaatcctgataaatctttccttgtttcacccctttgaagaattgcggactttaaacttat  21544700                                                                                         <------MYB46(1)                            --------->GLK1(1)                                            <------MYB83                            <---------GLK1(1)                                          <--------P                           --------->ARR11(3)                             <---------ANAC58       <---                           <---------ARR11(3)                      <----------DOF2<---------ANAC58                  <------MYB46(1)             --------->YAB1    <---------YAB1    <---------ANAC58    <---------ANAC46      --------->YAB1<---------ARR11(3)   <---------YAB1     <---------AHL20(2)   <---------LBD16<------MYB83          --------->ARR11(3) --------->YAB1 <---------ANAC58<----------ID1 -------YAB1      <---------MYB46(3)   <---------CCA1(2)  --------->AHL20(2)    --------->ARR11(3) --   atgatttcggatgcacaggctggttcgatgatatccatggtatatctttcatcaattccatttattattcttttttgcttaatttcttggtagggacaag  21544800                                                              --------->YAB1                                                              --------->TOE2(3)                    <---------AtLEC2                         <---------YAB1                   <-------TEIL                             --------->ARR11(3)                 <-------MYC2                               <---------ARR11(3)                 ------->MYC3                              --------->YAB1                 <-------MYC3                           <---------ICU4       --------->TOE2(3)                                --------->YAB1      ----------->GT1  ----------->GT1                  <--------HAHB4 ------GLK1(2)   ------->MYC2      ----------->GT1     --------->ICU4 --------->GT1   ------->MYC4 <---------YAB1   --------->ALFIN1                                  ----   attgtgaaatgttaatacatgtgcatggtaatatgaatagtataaataagtggtggaataattatcttaagagtctttgaacaattagttagtatggaga  21544900  Previous    Next  AGI:  At1g58190.1    Description:  leucine-rich repeat family protein. similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74180.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49290.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G74190.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41813.1); contains InterPro domain Leucine-rich repeat, N-terminal (InterPro:IPR013210); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 21544385    to: 21551661    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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