Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------->ZAT2           ==========================RAV         --------->At4g35610                                                         <---------MYB52(1)        --------->ANAC46   <---------ZAT2                                            --------->DOF5.7(2)      <---------At4g35610  <---------At4g35610                               --------->ZAT6      --------->At4g35610  --------->ZAT2                                  ------>MYB83<---------DOF5.7(2) ---------->RAV1(2)      <-----------RAV1(2) <---------ATHB12              ------>MYB46(1) ----->TEIL----------->RAV1(1)         --------->ANAC58                  <---------MYB59--------->At4g35610 ->ZmHOX2a(1)     --------->At4g35610  --------->ANAC58<-----------GT1   <---------MYB46(2)   gtacctgtagcagcaacaatagctggctcagcttgttgaagaagccattcaatagtttcaccatcggatttatgacctaactctctcgttaactgaaaaa  21517300                          ------->TEIL                          --------->ARR14(2)                          <---------ARR14(2)                    <---------SPL7                  <------NtERF2                 ------>NtERF2                 --------->LBD16============================bZIP_DOF                <---------ATERF1(2)                --------->DEAR3(1)                --------->DREB2C(2)                --------->RRTF1(3)                --------->ATERF1(2)                --------->RAP2.3(2)               <---------LBD16  ============================bZIP_DOF               --------->RAP2.3(1)               <------NtERF2    <---------TGA1a               --------->ERF1   --------->TGA1a               --------->ORA47(2)                       xxxxxxxxxxxxxxxx>smallRNA(i)               --------->RRTF1(1)                   <---------ANAC58                              ---               --------->ATERF1(1)                  <---------ANAC58                             <---              <---------RAP2.3(1)                   <---------ANAC46                         <-------              <---------ATERF1(1)                <----------DOF2                             --------  <---------ZAT2--------->RRTF1(2)           <---------ETT(2)         --------->ETT(2)      <-------GAMYB  <---------At4g35610     --------->GLK1(2)--------->LBD16            <---------ETT(2)    <------NtERF2  --------->ZAT2--------->RAP2.3(3)  ------>ZmHOX2a(1)  ----------->HVH21               <---------DEAR3(1)  --------->At4g35610  --------->ANAC46   <---------ANAC46      <----------DOF2        --------->ATERF1(1)   ctctagctgcacatagcgccggcatacgaatccgacgtcctcttccgtcgactttcgtgtgacggtctttagtcgaccgcttcgttgtagtcgccgttgc  21517400                                          <------ZmHOX2a(2)                                          --------->CCA1(2)                                         <---------AGP1                                         --------->AGP1                                             <                                         --------->ARR14(2)                                         -                                         <---------ARR14(2)                                        <-                                         <---------ARR11(3)                                        --                                         --------->ARR11(3)                                       <--                                        <---------CCA1(2)                                         ---                                       ----------->ARR10                                          ---                                    --------->ALFIN1                                             <---                   <---------ZAT14  <---------ANAC46                                             ----          <-------GAMYB             <---------REM1(1)                                           <----         <---------MYB46(3)       <------MYB46(1)                         --------->At4g35610   -----         --------->MYB55(2)       <---------ANAC46                        --------->ZAT2      <------         --------->MYB111(2) <---------LBD16                      <-----------HVH21          --------        <--------P<---------ZAT6 <---------AtMYB61               <---------ANAC46          <---------LBD16     <---------TOE2(3)      <---------LBD16------>ZmHOX2a(2)     <---------ANAC58         ------>ZmHOX2a(1) ------>LBD16     --------->ALFIN1<------MYB83                   <---------ANAC58      ------>ZmHOX2a(1) ------ANAC46 <---------ANAC58   <---------DEAR3(1)             <-------TEIL   <---------ANAC58------ --MYB52(1)   <---------ANAC58--------->HSFB2a(2)            --------->CCA1(2) <---------ANAC58<----- ->ATERF1(1)  <---------ANAC46<---------HSFB2a(2)  --------->ATHB12 <---------WRKY12  <---------ALFIN1   cgtagatgaggttgttgcgagtgttgagtcttcgggaggtgtagatctgggaacgattgagagagatgcgtcaactagctgtcttgctcctcctccggtg  21517500         <------NtERF2       <---------DEAR3(1)       <---------ANAC46      --------->ATERF1(1)      <------NtERF2      <---------ABI4(1)     <---------ATERF1(1)     ------>NtERF2     <---------RRTF1(1)     <---------RAP2.6(1)     <---------DEAR4(2)     <---------ERF1     <---------ORA47(2)     <---------RAP2.3(1)    <---------DEAR3(1)    <---------ATERF1(2)    --------->DEAR3(1)    <---------RAP2.3(2)    <---------RAP2.3(3)    <---------RRTF1(3)    <---------RRTF1(2)    <---------DREB2C(2)    <---------RAP2.6(2)   --------->ATERF1(1)   <---------ABI4(1)   <------NtERF2  <---------RRTF1(1)  <---------DEAR4(2)  <---------ERF1  ------>NtERF2  <---------ATERF1(1)  <---------RAP2.3(1) <---------O2 --------->O2 <---------DEAR3(1) <---------RAP2.3(2) ------NtERF2 -------->ATERF1(1) --------ATERF1(1) ---->NtERF2 -------DEAR3(1)                          <------ZmHOX2a(2) -------->HVH21                          --------->ARR11(3) ------>ETT(2)                           <---------ARR11(3)                                         - ---NtERF2--------->ALFIN1              --------->GLK1(1)                                       <---- ----->ATERF1(1)                        <---------GLK1(1)                                       <---- -----ATERF1(1)                     <------NtERF2                                               <---- ->NtERF2--------->ATERF1(1)      --------->ETT(1)                                             ------ ---MYB52(1)  <-------GAMYB       <---------ANAC46  --------->LBD16                            <----- ->LBD16<---------DEAR3(2) <---------ANAC46<-------TEIL                                        <----- --->ALFIN1 <------NtERF2 <---------LBD16--------->AGP1   ---------->DOF2                 <---------TOE1(3) ----DEAR3(1)<---------ANAC46   <-----------HVH21 <---------LBD16   ---------->DOF2       <---------TOE2(3)   gcgacggcggcggtgtcgttgttgttgtttcggatgtcggagagatccattttccggtgagaaagaagggaaaagaagatgaaattgaaattagggtttg  21517600                        --------->HSFC1(2)                        <---------ZAT2                        --------->At4g35610          --------->ARR14(2)       <---------------------WRI1    <------NtERF2      <------ZmHOX2a(1) <---------HSFB2a(1) --------->DOF2         --------->ZAT2 -----ANAC46            <---------At4g35610 --MYB46(1)--------->MYB52(1)     ---------->ID1 --MYB83  <---------ARR14(2)    <-----------RAV1(1)                           *TSS --->MYB46(2)           --------->HSFB2a(1)                             --------->HSFB2a(2) ----MYB46(3)           <---------HSFC1(2)                      <----------DOF2          --------->CCA1(2) ----AtMYB61       --------->AtLEC2 ------>NtERF2       ---------->ID1  <---------HSFB2a(2)   gtgaaagaggaagaaacggccatggaagctccgattgtcgccttcaagtttgactcttgtcttcttctttgtctcgagaagagagagagagagatgagag  21517700                                                                <---------AHL20(2)                                                            --------->AHL20(2)                                                       --------->ICU4             <---------MYB52(1)                                                       <---------YAB1            <---------RAP2.6(3)                                                    --------->ICU4               <-----------TGA1                                                    <---------AHL20(2)           ------>NtERF2                                                    <---------YAB1              --------->bZIP60(1)                           <---------MYB46(3)    --------->ARR14(2)             <---------bZIP60(1)                          --------->ALFIN1       <---------ARR11(3)     <---------AHL20(1)   <-------                         ------->PIF5   --------->ANAC46    <---------AHL20(2)  --------->RAP2.6(2)                         <-------PIF5  <---------HSFB2a(2) --------->YAB1----------->TBP    ---------                        --------->ZAT2 --------->HSFB2a(2)<---------YAB1--------->AHL20(1)--------->TOE1(3)                        --------->At4g35610      --------->ARR11(3)  --------->AHL20(2)   --------->TOE2(3)              ----------->GT1     <----------DOF2<---------ARR14(2) <---------AHL20(2)  <---------YAB1   <---------TOE2(3)  <-----------RAV1(2)      ----------->GT1  --------->AHL20(2)<------NtERF2 ---------->DOF2  ---------->DOF2 <---------DAG2<------ZmHOX2a(1)--------->AHL20(2)     <---------TOE2(3)   aaaaaaaggtttgatgatgtaaaagcaggtggatgacttttccagcaagaggatattattattaaaataaataatatatatgccgtcattaacattaaat  21517800                                                                          --------->AHL20(1)                                                                         <---------AHL20(2)                                                                         <--------HAHB4                                                                         -------->ATHB1                                                                         --------->AHL20(2)                                          --------->AHL20(2)             --------->YAB1                                        ----------->GT1                  --------->ATHB51                              --------->AHL20(2)                         <---------ICU4                           <---------AHL20(2)                           <---------ATHB51                          --------->AHL20(2) --------->ICU4    <----------DOF2  --------->TOE2(3)      <---------YAB1--------->DAG2          <---------DAG2<---------AHL20(2) ----------->GT1    ----------->GT1   ---------->DOF2       <-----------GT1<---------YAB1 --AHL20(2)     --------->ATHB12--------->WOX13(1)       --------->YAB1 --------->ICU4      --------- >AHL20(2)     <---------YAB1 <---------AHL20(2)    ----------->GT1<-----------GT1  <----------DOF2   aaaacgtttattgatttttgattagttattatataaatcaaaaagtaattaggggagaaaaataacttttcacaattattttaagtcttttttatcaaaa  21517900                                                                                 --------->YAB1                                                               <---------------AGL15                                                               --------------->AGL15   <---------TOE2(3)                                                     --------->ATHB51            --------->AHL20(2)                                                    <---------YAB1              <---------ATHB12    <                                          --------->YAB1      ----------------->AGL3 ---------->DOF2-                                  --------->TOE2(3) --------->ICU4       <---------ZAT18 ----------->GT1  --------->ANAC46             --------->AHL20(2)  --------->TOE2(3)     --------->ZAT18----------->GT1 >YAB1                <---------YAB1    <-----------GT1     <-----------GT1----------->RAV1(1)  -----   ttctacccaaatatgagttatgttatttttcaattacattattttcatcacaacattattgtttaccaattttagagcaccaataaaaaaaggtttaaaa  21518000                                                                                  <---------At4g35610                                                                          --------->ALFIN1                                                               <---------ARR14(2) <---------ZAT2                                                               --------->ARR14(2) --------->At4g35610                                                            <---------ANAC58 ----------->HVH21                                                            <---------ANAC58 <---------PCF2                                                            <---------ANAC46<------NtERF2              ---------->DOF2                              <-------TEIL  ------->PIF5            <---------TOE2(3)      --------->ANAC58     <---------ANAC58 <-------PIF5             --- --------->CCA1(2)                 --------->ANAC58     <---------ANAC58--------->ZAT2            --- ---------ARR11(3)               --------->CCA1(2)  --------->ZAT14     <---------At4g35610       <-- -------->ARR11(3)    ---------->DOF2    <----------DOF2<---------ANAC46<---------ZAT2         <----- ----->DOF2 <---------YAB1     --------->CCA1(2)    <---------ZAT14   <-----------RAV1(2)   ---------   aagatttgtggattaagaaagttagaaagagagagataagcatctttcagacagtgaagcgtgcgtatttttgcaggtggggacagctcattacaatcca  21518100     --------->GLK1(1)    <---------ARR11(1)    <---------ARR14(2)    <-----------ARR10    --------->ARR14(2)    ------->TEIL   <---------CCA1(2)          --------->AHL20(1)   <---------ARR14(1)         --------->ARR11(3)              --------->GLK1(1)  --------->LBD16             <---------ARR11(3)              <---------CCA1(2)             --------- ------>DEAR3(1)              <---------AHL20(1)        ---------->DOF2                     <-------- ------>AtMYB61       ---------->ID1               ----------->GT1                        ----------- -------ALFIN1   <----------DOF2               <---------GLK1(2)                          <----------DOF2 ----ALFIN1      <---------DAG2                <---------ARR11(3)               --------->ZAT6   ---- >ANAC46      <-----------GT1<---------AHL20(2)--------->ARR11(3)   <---------MYB52(1)    <----------   cctccgtatctccatttcacttttgtcttaaatatttttagttttataagattttgttaaaagtatatccattagataaatgacactaaattctttaatt  21518200  Previous    Next  AGI:  At1g58100.1    Description:  TCP family transcription factor, putative. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN64544.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333) Range:  from: 21516049    to: 21517678    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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