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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
CCA1(2)
<---------
HSFC1(2)
<---------
ARR14(2)
<---------
At4g35610
----------->
HVH21
--------->
HSFC1(2)
--------->
At4g35610
--------->
HSFB2a(1)
<----------
DOF2
<---------
At4g35610
------->
TEIL
<---------
At4g35610
<------
ZmHOX2a(1)
----
ANAC46
<---------
REM1(1)
--------->
At4g35610
<---------
AtMYB61
-
CCA1(2)
<---------
YAB1
<----------
DOF2
<---------
ARR11(3)
--------->
ALFIN1
<-------
tgtaagattgaagagacttgattttgatgaagcttccattgctcttctgagttcaatgtctttggagattggaggtggaggagctgatatgggttttggg
21098000
<---------
WOX13(1)
--------->
ATHB12
<---------
YAB1
<----------
DOF2
<---------
AtLEC2
<---------
ANAC58
<---------
ANAC58
--------->
HSFC1(2)
--------->
HSFB2a(1)
<---------
HSFC1(2)
<---------
HSFB2a(1)
<--
<---------
At4g35610
<---------
AHL20(2)
<--
--------->
ZAT14
<---------
ANAC46
--------->
ATHB12
---
<---------
YAB1
<--------
P
<---------
ANAC58
--------->
ICU4
<------
ZmHOX2a(1)
<---------
TOE2(3)
--------->
At4g35610
----------->
GT1
<---------
YAB1
--------->
ALFIN1
--
ANAC46
<---------
ZAT14
<---------
ANAC58
<---------
YAB1
--------->
DAG2
---
taattgagattgagttcagaggtagcttccatggctttgattgggattgcaaaatagggttttgtgattattgaatttgcagagaaggtgaaggagaaga
21098100
------>
ZmHOX2a(2)
<---------
ARR14(2)
--------->
MYB46(3)
--------->
DEAR3(2)
--------->
MYB52(1)
*
TSS
<----------
DOF2
------>
MYB83
--------->
ZAT2
------->
TEIL
------>
MYB46(1)
<
<---------
ZAT2
<-------
TEIL
----------------->
AGL3
<---------
MYB59
-
-------
HSFB2a(1)
<---------------
AtSPL8
<---------
DAG2
------->
GAMYB
--------
-------
HSFC1(2)
<---------------
AtSPL3
--------------->
AGL15
-------->
P
<------
ZmHOX2a(2)
---
------>
HSFB2a(1)
--------------->
AtSPL3
<---------------
AGL15
--------->
MYB52(1)
<-------
------>
HSFC1(2)
--------------->
AtSPL8
--------->
TOE2(3)
--------->
ZAT6
--------->
ARR14(2)
<--
agtttcgaagcagggacat
ttgtatg
tacgtcttctttctctaacctttttaagttatacgtttataaacactaaccgaaccgatccgaaccaaaatagt
21098200
<---------
SPL7
--------------->
AtSPL8
--------->
AHL20(2)
<---------
AHL20(2)
---------
AHL20(2)
-------->
AHL20(2)
------->
AtSPL8
<---------
ZAT6
------>
ANAC55(2)
<---------
ANAC58
<---------
ARR14(2)
<-------
--------
AtSPL8
--------->
SPL7
<---------
ANAC46
--------->
ARR14(2)
--------
-------
ANAC55(2)
<---------
ANAC58
--------->
GLK1(2)
--------->
YAB1
acttaattaaaaacaccgtaccatatatatggtttgagtgtaacttatatcggataaaccgaatccgaatcaaatcgaaaacacactgatactcgaattc
21098300
<---------
ANAC58
------>
MYB83
------>
MYB46(1)
--------->
MYB46(3)
------>
MYB46(1)
------>
MYB83
<---------------
AtSPL3
<---------
MYB59
<---------
ANAC58
<---------
MYB111(1)
<-----------
GT1
--------->
MYB46(3)
--------->
YAB1
---------
--------->
SPL7
<---------------
AtSPL8
--------->
MYB46(3)
--------->
AHL20(2)
<---------
SPL7
--------------->
AtSPL8
--------->
SPL7
<---------
AHL20(2)
--------------->
AtSPL3
<---------
YAB1
<---------
At4g35610
--------------->
AtSPL8
--------->
ZAT6
------>
MYB46(1)
--------->
At4g35610
--
ARR14(2)
<---------
MYB46(2)
--------->
SPL7
------>
MYB83
---------->
DOF2
--------->
YAB1
->
ARR14(2)
--------->
AtMYB61
--------->
PCF2
--------->
MYB52(1)
<------------
CBF
<--------
gaatcgaaaccgtaccaaaccatccatttgggtaccactataataaaccgaacgactccgaaccaaaagctggattgagccgaattttaatccgaattcg
21098400
---------->
DOF2
*
TSS
--------->
AHL20(2)
--------->
TOE1(3)
--------->
AtMYB61
----------->
GT1
<---------
MYB52(2)
----------->
GT1
>
ARR14(2)
--------->
ANAC46
--------->
TOE2(3)
<---------
AHL20(2)
---------->
DOF2
-
ARR14(2)
<-----------
GT1
--------->
YAB1
--------->
TOE2(3)
--------->
GLK1(2)
aaaaaccgaaaaatttatacgacttcgtttctcataaaccac
aaaccctaactattaaaaagaatcgaaaaaatcaaagttctgaacttctgatcaattt
21098500
<---------
RAP2.3(3)
--------->
At4g35610
<---------
At1g77200
--------->
YAB1
--------->
YAB1
<---------
DEAR3(1)
<---------
ICU4
<-------
TEIL
<---------
DREB2C(2)
<---------
ATHB12
<---------
ARR14(2)
--------->
RAP2.6(3)
<---------
MYB52(1)
--------->
ARR14(2)
<-----------
HVH21
--------->
TOE1(3)
<---------
At4g35610
<-----------
GT1
<-------
TEIL
--------->
TOE2(3)
--------->
HSFB2a(2)
<---------
ANAC58
<------
NtERF2
----------->
GT1
<---------
HSFB2a(2)
<---------
ANAC46
<---------
At4g35610
<---------
TOE1(3)
--------->
ARR11(3)
<---------
ANAC58
<-------
GAMYB
<-------
<---------
YAB1
<---------
ARR11(3)
--------->
ARR11(3)
--------->
At4g35610
<---------
TOE2(3)
<---------
ARR14(3)
--------->
YAB1
<-----------
RAV1(1)
--------
cgat
atgttatcgttaatcatcagaaggtctcgaagcagattcatcatccatggaatcaaaatttcttgtaactctctgtcggctgtagattcaagttct
21098600
--------->
GLK1(2)
--------->
TOE1(3)
--------->
ARR11(3)
--------->
HSFC1(2)
<---------
ARR11(3)
<---------
HSFB2a(1)
----------->
GT1
<---------
HSFC1(2)
<---------
TOE2(3)
------->
TEIL
<---------
ICU4
<-
<---------
ARR14(2)
--------->
ATHB51
<----
--------->
HSFB2a(2)
<---------
TOE1(3)
--------->
YAB1
<------
MYB83
<---------
HSFC1(1)
<---------
MYB52(1)
<---------
ATHB12
<------
MYB46(1)
<---------
AtMYB61
--------->
TOE2(2)
--------->
ICU4
--------
--
ARR11(3)
<---------
HSFB2a(2)
----------->
RAV1(2)
<---------
ATHB51
---------
->
ARR11(3)
--------->
HSFC1(1)
<---------
ALFIN1
----------------->
AGL3
--------->
CCA1(2)
tcagttttggtttctagaagaaccttcagttcaacacctgcgttaagctattttggattcaattatggaaaaatctctaatttgaatcagagatttggta
21098700
<---------
At4g35610
--------->
ALFIN1
----------->
HVH21
<-----------
RAV1(1)
<---------
At4g35610
--------->
At4g35610
--------->
At4g35610
<------
NtERF2
--------->
ATHB12
--------->
At4g35610
<---------
YAB1
--------->
HSFB2a(2)
--------->
At4g35610
<---------
At5g28300
----------
GT1
----------->
ARR10
<------
ZmHOX2a(2)
<---------
At4g35610
------->
TEIL
-----
ICU4
<---------
HSFB2a(2)
<---------
YAB1
--------->
GLK1(2)
<---------
WOX13(1)
--->
GT1
--------->
HSFB2a(2)
<---------
ATHB12
<---------
REM1(1)
<---------
YAB1
>
MYB59
<---------
LBD16
<---------
HSFB2a(2)
<---------
At4g35610
<---------
ANAC46
-
attacgcttattctgggagtagtttcgcttccagtactcgatcattgagctcagaagctgtagctgtggcagcgacttgtgatggacttactgtggaacg
21098800
<---------
At4g35610
--------->
ANAC46
--------->
ANAC58
--------->
At4g35610
<---------
WOX13(1)
--------->
ZAT18
---------
--------->
ATHB12
<---------
MYB46(3)
--------->
ZAT14
--------->
ANAC46
<---------
ATHB12
--------->
ATHB12
--------->
At4g35610
--------->
ANAC58
-------->
YAB1
<---------
At4g35610
--------->
ANAC58
--------->
ANAC58
aattatagctaatcagtggccgattttagatgagaatgaaggtgattggaagagtcacgctgcagcaattgcacagtctattcaagtcatcaagagacga
21098900
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AGI:
At1g56345.1
Description:
pseudouridine synthase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO17441.1); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145)
Range:
from: 21096658
to: 21098126
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g56350.1
Description:
peptide chain release factor, putative. similar to HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109), translation release factor [Arabidopsis thaliana] (TAIR:AT5G36170.2); similar to HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109), translation release factor [Arabidopsis thaliana] (TAIR:AT5G36170.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN69654.1); contains InterPro domain PCRF (InterPro:IPR005139); contains InterPro domain Peptide chain release factor 2; (InterPro:IPR004374); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352)
Range:
from: 21098443
to: 21101653
Orientation: Forward
Links:
TAIR
MIPS
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publications
when using AthaMap.
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