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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                             --------->MYB52(1)
                                                                            -------->HAHB4
                                                                            --------->ATHB51
                                                                            <---------ICU4
                                                                           --------->ICU4
                                                                        --------->ICU4
                                                                      --------->ANAC46
                                           <---------HSFB2a(2)     <---------ZAT14      --------->AHL20(2)
                                        ------>ZmHOX2a(1)          --------->ZAT14   <--------HAHB4
                              --------->ZAT14                ------>NtERF2 <---------YAB1    -------
                              <---------ZAT14               --------->DEAR3(1)       <---------ICU4
 --------->ZAT18        <------ZmHOX2a(1)  --------->HSFB2a(2)     <---------ZAT18  --------->ICU4
 <---------ZAT18   --------->ALFIN1<---------At4g35610 --------->MYB52(1)<---------ICU4 <---------AHL20(2)
 
attgtggacttcacatagagggatggaggagactgttctgctccttacagaacaaaactagcgacgactctgcacataattatcggcataattaaacaaa  21028000
                                               ------>ZmHOX2a(1)
                                               <----------DOF2
                                             ------>ZmHOX2a(2)
                                            <------ZmHOX2a(2)                         --------->At4g35610
                                           --------->ARR14(2)                         <---------At4g35610
                                     --------->ICU4                                ------>ZmHOX2a(1)
     <----------DOF2     --------->ALFIN1  <---------ARR14(2)                 <----------DOF2
   <----------DOF2     --------->ALFIN1    ------->TEIL           *TSS <---------MYB46(3)     <-----
--->DOF2        ---------->DOF2    ---------->DOF2              <----------DOF2    <---------At4g35610
 
gtctggctctttcgaaccccaaagaagagtggcgatagcaaagatggatcctttgcctctgcaacttctttcgatggtttcctttcctctgcttcccgtt  21028100
                                                                                                 <--
                                                                                                 <--
                                                                                                 ---
                                                                                                 <--
                                                                                                 ===
                                         <------NtERF2                                           ===
                                        <-----------RAV1(2)                                   ------
          <---------ETT(2)              <------NtERF2--------->ANAC46                       --------
        --------->At4g35610            <---------LBD16 <---------ZAT18                      <-------
        <---------At4g35610          ------>NtERF2<---------At5g28300    ===========================
        <-------GAMYB             ------>ZmHOX2a(2)  <---------At4g35610 <----------DOF2    <-------
<----------DOF2       --------->WRKY18(1)--------->LBD16                 ===========================
----MYB52(1)------------>CBF      <---------LBD16<-----------GT1------------>CBF           <--------
 
tccctttactctgttgacaattagggtcaagttttgatccggcccgggtgatttacagcccacaaggtccaatgggcttcttcgaaaataagtttgcgcg  21028200
             ----------->HVH21
            <-------MYC3
           <---------ANAC58
           --------->ANAC46
           =================bZIP_DOF
           <---------O2
           --------->ANAC58
           <---------TGA1a            <-------MYC2
           <---------ANAC55(2)        <-------MYC3
           --------->ANAC58           ------->MYC3
           <---------ANAC58           ------->MYC2
           <---------bZIP60(1)       --------->ANAC55(2)
           --------->ANAC55(2)       <---------ANAC55(2)
           <---------ANAC46          <---------ANAC46
           --------->bZIP60(1)       --------->TGA1a
-------O2  --------->O2              <---------TGA1a
-------bZIP60(2) ==============================bZIP_DOF
------>O2  <---------bZIP60(2)       ============================================bZIP_DOF   --------
-------TGA1a------->MYC3             <---------O2                                          ---------
============================bZIP_DOF --------->O2                           --------->HSFB2a(1)
=====================bZIP_bZIP   <-----------------PIF3(1)                  <---------HSFC1(2)
----->HVH21--------->bZIP60(2)<---------ALFIN1                              <---------HSFB2a(1)
->ANAC46   --------->TGA1a   --------->ZAT18                                --------->HSFC1(2)
--ANAC58 <-------------DYT1 --------->ANAC58                   <---------SPL7    --------->HSFB2a(2)
=====================bZIP_DOF<---------ZAT18                   <-----------HVH21 <---------HSFB2a(2)
--ANAC58 ------------->DYT1 --------->ANAC46                 --------->DEAR3(2)  --------->HSFC1(1)
=======bZIP_DOF  <----------DOF2 <-----------HVH21 <---------YAB1--------->SPL7 <---------LBD16    -
-LBD16 <-----------HVH21    --------->ANAC58    <---------MYB52(1)    ---------->DOF2    --------->ZAT6
 
acgttgcaaatgtcacgtgacttttgttcacgcgcacttcacgtgttcttcgttattcttcgaaaccgtccgataaagaaatttctggaataacacaaca  21028300
                                                                                     <---------GLK1(2)
                                                                                     <---------ARR14(2)
                                                                                   --------->ANAC46
                                                                               --------->AtMYB61
                                                       <-----------HVH21       <---------ALFIN1
                                                     <-------MYC4             --------->MYB46(3)
                                                     ------->MYC4            ------->TEIL
                                                     -------->ABF1          --------->ANAC46
                                                     ------->MYC2         <---------ANAC55(2)
                                                     <-------MYC2         --------->ANAC55(2)
                                                     ------->MYC3         --------->ANAC46
                                                     <-------MYC3         --------->ANAC58
                                                    <--------ABF1         --------->ANAC58
                                                    <---------O2         <-------TEIL--------->ARR14(2)
                            --------->TOE2(3)       --------->TGA1a     --------->ARR14(1)
                           ----------->GT1          --------->ANAC55(2) --------->CCA1(2)
                           --------->ANAC55(2)      <---------TGA1a    <---------ARR11(3)
                           <---------ANAC55(2)      <---------ANAC55(2)<---------ARR14(2)
      ---------->DOF2      <---------ANAC46         --------->O2       --------->ARR11(3)
    --------->YAB1        <-----------------------TaNAC69(2)           --------->ARR11(1)
   <---------ATHB12      --------->MYB52(1)       <---------ALFIN1   ----------->ARR10
--->RAV1(1)            <---------MYB52(2) ====================bZIP_DOF --------->ARR14(2)
>ANAC46       <-----------RAV1(2)         <----------DOF2          <------NtERF2----------->RAV1(1)-
-------->MYB46(3) --------->ALFIN1        <---------DAG2        <---------LBD16--------->DEAR3(1) --
 
taaccaatgaaaagcatacaggtggaagtaacgtaaaaactcccgctttttcgacacgtgtcaactaggcggaagatacgcaccaccagaaacgcttgat  21028400
           --------->RAP2.3(3)
         ------>NtERF2                      ------>ZmHOX2a(2)
        --------->ANAC58                   <------ZmHOX2a(2)
        --------->ANAC58                  --------->ARR11(3)
        --------->ANAC46                  <---------ARR14(3)
       ------->GAMYB                      --------->ARR14(3)
       --------->MYB46(3)                 <---------ARR11(3)                                       <
     -------->P                      --------->HSFB2a(2)                                           -
-------->DAG2               *TSS     <---------HSFB2a(2)                 <<<<<<<<<TBF1             -
-------->DOF2<---------ALFIN1       <---------ANAC46     <---------MYB52(1)                        <
 
aaaaagctaacccgccccaaacccatttatcttagggtttcgcgagatctcactctcactggtatgtctgtgtttcttcttccattttctgtttctattg  21028500
                                             <----------DOF2                     <---------YAB1
                                        <---------MYB52(1)             ---------->DOF2
                <---------ANAC58       ====================================HOX2a_HOX2a
                <---------ANAC58       ------>ZmHOX2a(1)            <------ZmHOX2a(2)
---------HSFB2a(1)                     <----------DOF2            <------ZmHOX2a(1)
-------->HSFC1(2)                    ------>ZmHOX2a(2)        ---------->DOF2  --------->YAB1  <----
-------->HSFB2a(1)                   ====================================HOX2a_HOX2a  <xxxxxxxxxxxxx
---------HSFC1(2)              <----------DOF2          --------->TOE2(3)     <---------YAB1   -----
 
gaaacttctctctccaatttcgttttcttcacttctttgatcctttagctttgacaaaaccgtagtaaaggatcaaaagttatcatctttggtccatgtt  21028600
           <---------ANAC58
          --------->ZAT2
     --------->ZAT14                               <---------ARR14(2)
     --------->ZAT18                <---------ARR14(2)   <---------At4g35610
     <---------ZAT14            <---------LBD16    --------->ARR14(2)                   <-----------GT1
  <---------ANAC58<---------ANAC58  --------->ARR14(2)   --------->At4g35610       <----------DOF2
  <---------ANAC58<---------ANAC58--------->LBD16  <-----------ARR10            <----------DOF2
-----ANAC46<---------ANAC58   --------->ARR14(2)  <---------GLK1(1)           <---------------------
xxxxxxxxsmallRNA(fl3)         <---------ARR14(2)  --------->GLK1(1)      <---------ANAC58       <---
------>GT1<---------ZAT2  ----------------->AG    <---------CCA1(2)      <---------ANAC58  <--------
 
gtgaatcgtgctctgcttgggtcgtgactcccaaatccggatttgaaaccagcatatctgagcttaattcgagcatgcatgcgcttctttttttctgatt  21028700
                                     <------------AtMYB77                                          <
                                    <---------At5g28300                                            <
                                   <-----------GT1                                                --
                                   --------->MYB52(1)                                 <-----------HVH21
                           <----------DOF2                                         --------->At4g35610
---ANAC81             <---------MYB52(1)             <---------AHL20(2)            <---------At4g35610
------AHL20(2)       --------->TOE1(3)    --------->WOX13(1)           <---------ANAC58   --------->At4g35610
-YAB1 <----------DOF2--------->TOE2(3)------->GAMYB --------->AHL20(2) <---------ANAC58   <---------At4g35610
 
ttttttagactttggttctaaatcccttaactttggattaactgtcaatctacaattttatattaacagagatagcttagcaatggagcagtcagaagag  21028800
                                             <---------ANAC58
                                  ------->TEIL
                                 <-----------GT1 <---------YAB1
                               --------->ANAC55(2)
            ----------->RAV1(1)<---------ANAC55(2)--------->YAB1
         ------->GAMYB        <---------------AtSPL3                   <---------At4g35610
      ----------->RAV1(1)     --------------->AtSPL8                   --------->At4g35610
   ------->GAMYB              --------------->AtSPL3    --------->ZAT18<---------ZAT2
 --------->At4g35610          <---------------AtSPL8   --------->ALFIN1--------->ZAT2
---------WRKY38(1)      <---------WOX13(1)   <---------ANAC58         ------->TEIL             -----
---------WRKY12      ----------->HVH21     <---------YAB1 <---------PCF2                       -----
------->WRKY18(1)    --------->ALFIN1   ------>ZmHOX2a(1) --------->PCF5                    --------
 
ggtcaacagcaacagcaacagggagtgatggattatgtacctcctcatgcttatcagagtgggccagtaaatgcagcttcccatatggcattccaacaag  21028900
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AGI:  At1g56165.1   
Description:  other RNA
Range:  from: 21026424    to: 21028067    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g56170.1   
Description:  HAP5B (Heme activator protein (yeast) homolog 5B); DNA binding / transcription factor. Identical to Nuclear transcription factor Y subunit C-2 (NFYC2) [Arabidopsis Thaliana] (GB:Q8LCG7;GB:O23636;GB:Q8VY66;GB:Q9SGU4); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G08970.1); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G08970.2); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding [Arabidopsis thaliana] (TAIR:AT1G08970.3); similar to DNA binding transcription factor [Brassica rapa] (GB:ABL97952.1); contai
Range:  from: 21028429    to: 21029548    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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