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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                       <---------YAB1
                                                                                     --------->YAB1
                                                    ------->GAMYB                   <---------YAB1
                    ----------->GT1                <---------MYB52(2)   --------->GLK1(2)
            <-------TEIL                           --------->MYB46(3)   <-----------ARR10
   ------->TEIL    ----------->GT1            --------->ANAC46          <---------ARR14(2)
   <-------TEIL   <---------TOE2(3)           --------->ANAC58          <---------ARR11(1)     <----
-------------->AtSPL8           ---------->DOF2  --------->MYB52(1)    <---------CCA1(2)      ------
---------------AtSPL8      --------->AHL20(2) --------->ANAC58    --------->TOE1(2) ----------->GT1
 
aacatgtacatcaaatgcatagaggttaaatttaacaaagaacaaaaacacacaacgaacaaaataaaacctgcaaatctatacatgatgataaatataa  20975000
         --------->ATHB12
        <---------YAB1
        --------->ICU4
     <---------DEAR3(1)
    <------NtERF2
  <---------DEAR3(1)                                                                       ------->GAMYB
 <---------At4g35610                                                     --------->YAB1--------->ANAC46
 --------->At4g35610      --------->ZAT14                               <---------ATHB12--------->MYB52(1)
-----AHL20(2)           --------->ANAC46                              --------->WOX13(1)----------->RAV1(1)
--->AHL20(2)------>ZmHOX2a(2)                ------>ZmHOX2a(2)     <---------ARR11(3)--------->ANAC46
 
aatcagcggcgatgatcggagaatcacactgaaccagtttttggatgatcgactactacatggataacaatatcaatcaaaactgaaaacacaacagact  20975100
                                                      <------ZmHOX2a(2)
                                                     <---------ARR14(2)         ----------->RAV1(1)
                                            --------->AtMYB61             --------->ANAC58
                                           ----------------->AGL2     ----------->GT1
                                          -------->P --------->AGP1--------->MYB52(1)
                                        ------>ZmHOX2a(2)         ------->GAMYB --------->MYB52(1)
                                      <---------ARR11(3)         <---------MYB52(2)
                                      <---------ARR14(2)         --------->MYB46(3)
                                      --------->ARR11(3)         <---------MYB55(2)
                             --------->TOE2(2)       --------->ARR14(2)--------->At5g28300
                         <---------YAB1<------ZmHOX2a(2)       ----------->RAV1(1) ------->GAMYB ---
                     <---------GLK1(2)--------->ARR14(2)  --------->AtLEC2--------->ANAC58--------->AtLEC2
 
tgtaagaaaactttgacatattcagattattatctacgagggatctaccaaaaccagatcgatgcacaacaaacggtaagaaacaacagaaccatggaaa  20975200
                                                                            --------->ANAC58
                                                  ----------->GT1           --------->ANAC58
                                               ------>MYB83               --------->TOE1(2)
                                               ------>MYB46(1)            --------->TOE2(2)
       --------->YAB1------->GAMYB           --------->AtMYB61  ------>ZmHOX2a(1)
------->DOF2    <------ZmHOX2a(2)   --------->At4g35610        --------->TOE2(3) --------->At4g35610
 
caaagtgctataaacatagatcaacagcaagactccatcatctaaacaccaaatcgtgacaaaattcctaaatcaaaccaaggaagatgaaattgaatcg  20975300
                     <---------MYB52(2)
                --------->ANAC46
               --------->MYB52(1)
            --------->ANAC46                                                        <---------At4g35610
         ------>ZmHOX2a(2)                                                    <---------ANAC58
        <------ZmHOX2a(2)                                                     <---------ANAC46
       <-----------ARR10                                                      <---------ANAC58
       --------->GLK1(2)                                                    <---------ATERF1(1)
       --------->ARR11(3)                                                 <-----------RAV1(2)
       <---------ARR14(2)                                        <-------TEIL--------->ATERF1(1)
       <---------ARR11(3) --------->TOE1(3)                     --------->ALFIN1<------NtERF2
       --------->ARR14(2) --------->TOE2(3)              ---------->DOF2 --------->ATERF1(1)       <
      <------ZmHOX2a(1) -------->P ---------->DOF2  ---------->DOF2      <------NtERF2     ---------
 
atgaagagaggatctacacaagggactaaccttagagagaaagatgagaacgagagaaagaaaagaggtgcaaggaggcaggcgtctagcagcctaaagc  20975400
                               <----------TaMYB80
                 ----------->ARR10
             --------->ANAC58  <---------CCA1(2)
           --------->TOE2(2)   <---------GLK1(1)                                      --------->ARR14(2)
           --------->TOE1(2)   --------->GLK1(1)                                      <---------ARR14(2)
 <---------AHL20(2)           --------->ARR14(2)                                   ------------>CBF
--------->AHL20(2)<---------At4g35610<---------MYB52(1)                   <----------DOF2
---------YAB1--------->ANAC58 <---------ARR14(2)   <---------TOE1(3)     ----------------->AGL1
->DOF2*TSS--------->MYB46(3)  ---------->TaMYB80   <---------TOE2(3)     <-----------------AGL1   --
 
ttattatatagtaaccaaggaagatgctctgagtatatcccttgtttctcgtttagggttttcgctctcttaatgggccttaatgggccaatactcatcg  20975500
                                                                                       --------->ANAC46
                                                                                  <---------ZAT18
                    --------->ANAC55(2)                                           --------->ZAT14
        --------->AHL20(2)                                                        --------->ZAT18
        <---------AHL20(2)                                                        <-------TEIL
      --------->TOE2(3)                                                           <---------ZAT14  <
    <---------YAB1  <---------ANAC55(2)                                       <---------ICU4   -----
   <---------ARR11(3)                                  --------->AtLEC2 --------->YAB1 --------->ANAC58
   --------->ARR11(3)                 <---------AHL20(2)            <---------AHL20(2) --------->ANAC58
---------->CBF      <---------ANAC55(1)   --------->YAB1           --------->AHL20(2)<---------ALFIN1
 
ggccaatatcattaattctggttaagtgtctattgagttttttaatcttcatgagcccatgcatcatcgatttaatcttcataagtacacacgctcaatt  20975600
                                                              <---------ANAC55(2)
                                                              --------->ANAC55(2)
                                                         <---------ICU4
                                                         --------->YAB1                          ---
                          <---------AHL20(2)            --------->ICU4                           ---
                         <---------AHL20(2)             <---------YAB1                  <---------AHL20(2)
            ---------->DOF2                          --------->ICU4                    --------->AHL20(2)
--------->ATHB51         --------->AHL20(2)         <---------MYB59                    <---------AHL20(2)
--------->YAB1  <---------ARR11(3)                --------->ARR11(3)               <---------AHL20(2)
---------ATHB12 --------->ARR11(3)      --------->At5g28300 <-----------GT1        --------->AHL20(2)
---->AHL20(2)  --------->YAB1    <----------DOF2  <---------ARR11(3)         <---------At4g35610 ---
 
caataatcgaagtaacaaagatactaaattaaatcactttcactgtaaaccgagaccttattattacatatcatttgttcatctgtttaattaaatcaac  20975700
                                                                                 --------->CCA1(2)
                                                                                --------->ARR11(3) x
                                                                                <---------ARR14(2) x
                                                                                --------->ARR14(2)xx
                                                                                <---------ARR11(3)xx
                                                                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
                                                                        --------->ICU4            xx
                                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                                                                       <---------TOE2(3)         <xx
                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
         <---------YAB1                                             --------->ARR11(3)       xxxxxxx
       --------->YAB1                                               <---------ARR11(3)    --------->ICU4
      --------->ICU4           <---------MYB52(1)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
------>ANAC58                  --------->DOF5.7(2)   <---------ANAC46xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
------>ANAC58  --------->TOE2(3)          <-----------GT1 <---------ARR14(2)   xxxxxxxxxxxxxxxxxxxxx
------>ANAC46<-------TEIL     <-------GAMYB<-------TEIL   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxx
 
aaggaatgaatgatgatacattaatcttgtttccgttatctatatatacatttttggaggggatttttgaagataatgttgaagatttgagccataattc  20975800
                            <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                            xxxxxxxxxxxxxxxx>smallRNA(s)
                           --------->LBD16
                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)
                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                         <xxxxxxxxxxxxxxxxsmallRNA(i)
                         <---------LBD16
                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)
                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)
                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
                       <-----------GT1
                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)
                 <------MYB46(1)
                 <------MYB83
                <---------MYB46(3)
               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
             <---------ANAC58xxxxxxxxxxxxxxxx>smallRNA(s)
             <---------ANAC58<xxxxxxxxxxxxxxxxxxsmallRNA(fl3)
            xxxxxxxxxxxxxxxx>smallRNA(i)            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)
  --------->AHL20(2)  <-----------GT1           <---------HSFB2a(2)
  <---------AHL20(2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)
xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->HSFB2a(2)
xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          --------->GLK1(2)
xxxxxxxxxxxxxxxxxx>smallRNA(fl3)            --------->ARR14(2)                             <xxxxxxxx
xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------GLK1(2)                            <---------AHL20(2)
xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------ARR14(2)              ------>ZmHOX2a(2)
xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i)             --------->ARR11(3)
xxxxxxxxxxxxxxxx>smallRNA(si3)  <-----------GT1<---------LBD16            <---------ARR11(3)       -
x>smallRNA(se3)--------->ALFIN1 <xxxxxxxxxxxxxxxxsmallRNA(s) --------->AHL20(2)         --------->AHL20(2)
xxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(s)  <---------AHL20(2)       --------->TOE2(3)
 
aacaattaattcaaatgggtgggttttacccggtttaactctgttcggattctggataacatgtttaattctgttctgatcttagataacattaattttt  20975900
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AGI:  At1g56070.1   
Description:  LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding. similar to MEE5 (maternal effect embryo arrest 5), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G06220.2); similar to MEE5 (maternal effect embryo arrest 5), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G06220.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ50238.1); similar to Elongation factor 2 (EF-2) (GB:O23755); similar to predicted protein [Physcomitrella patens s
Range:  from: 20971595    to: 20975407    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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