Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            ------>NtERF2       <---------ANAC58       <---------ANAC58     --------->ZAT14     <---------ZAT18     --------->ZAT18     <---------ZAT14                                                    --------->ANAC58 ------>ZAT14                                                           --------->ANAC58 -------ZAT14                               ---------->DOF2    --------->YAB1 ------>ZAT18                        <---------ARR14(2)       --------->ICU4 ----------->GT1  <------ -------ZAT18     ------>ZmHOX2a(1)  --------->ARR14(2)       <---------ATHB12    ---------->DOF2   tgcactgtgccctgccagtccttaagtgtgtaatagacagaacttcaaaagaaaacaaacaccaatgatgcagaaggcaatgtgaaaagaacatttcttt  20898700                                                                             <---------ALFIN1              <---------GLK1(1)                                             ------>MYB46(1)              --------->GLK1(1)                                   ------>ZmHOX2a(1)          -------- --------->ZAT14       --------->TOE1(3)                 <---------ATHB12   ------>MYB83  --------->HSFB2a(2) --------->ZAT18       --------->TOE2(3)           --------->ANAC58        ----------->RAV1(1)     <- <---------ZAT18 <-----------GT1           ---------->DOF2    --------->ARR14(2)          <---------HSFB2a(2) ----DOF2   <------ZmHOX2a(1)    <-----------GT1   --------->ANAC58       --------->AtMYB61--------->LBD16   tagtgctcaccataggaattcacaaccttgaaaattttcatcccaaaatgcgcatgcaaatcagtttcctcacagaccaacacattatacatccagaaag  20898800                     <---------ZAT14                     --------->ZAT14                     <---------ZAT18                      <------ZmHOX2a(1)          <---------ARR14(2)                          --------->TOE1(2)                     <--------          --------->ARR14(2)             --------------->AGL15                              --------- --------->WOX13(1)--------->At4g35610   <---------------AGL15                              --------- -->DOF2  --------->GLK1(2)             ----------------->AGL1              --------->YAB1 <---------ANAC46 ------TEIL   ------>ZmHOX2a(1)--------->At4g35610 <---------ARR14(2) --------->TOE2(3)   <---------LBD16   attcaattagagaatcctatcagttcacctataagctaagtttcgaaattgagaaaccgaggaagaccaaaaacttaataagaacagtaggctacgggaa  20898900                                                                                                    -                                                                                                    <                                                                                          --------->ANAC58                                                                                          --------->DEAR3(1)                                                                                          --------->DREB2C(2)                                                                                          ------->GAMYB                                                                                          --------->ANAC46                                                                                          --------->ANAC58                                                                             <---------GLK1(1) ------                                                                             --------->GLK1(1) ------                                                                      <---------At4g35610 --------->RAP2.6(2)                                                                      --------->At4g35610--------->DEAR3(2)                                                                      <---------ZAT2     --------->MYB46(3)                                                                   --------->At4g35610   <-----------                                          <------MYB46(1)          <---------At4g35610  <---------ATERF1(1)                                <----------DOF2   <---------At4g35610 --------->ZAT2   --------->ARR14(2) -HSFB2a(2)         ---------->DOF2       <------MYB83            <-----------RAV1(1)  <---------ARR14(2) >LBD16---------->DOF2--------->DAG2     --------->ALFIN1      --------->ARR14(2)     <------ZmHOX2a(1) >HSFB2a(2)       --------->AtMYB61      <---------AtMYB61    <---------GLK1(1)   --------->LBD16 <--   acaacattcgaaagagaagaccaaaagggaatttctttagagggtggtatcgagcttactcttgaaatctgctgctgtgatatccagaggaaccgccatg  20899000                                                                                         <-----------RAV1(1)                                                                               <---------ARR14(2)              --------->STY1(2)                                                --------->ARR14(2)              <---------STY1(2)                                                --------->GLK1(2)      <---------GLK1(1)   ---------->DOF2                              --------->ALFIN1  ------>ZmHOX2a(1) -------->ARR14(2)      --------->At4g35610                        --------->ZAT14 <------MYB46(1) ---------ARR14(2)      <---------At4g35610                        <---------ZAT14 <------MYB83 ----->TGA1   <---------ZAT2                                       --------->ZAT18--------->MYB59 ----->HVH21 --------->ANAC58                             <---------ANAC46<---------ANAC58 -AtMYB77    --------->ANAC58    --------->At5g28300      <---------ANAC58<---------ANAC46 -------YAB1 --------->ANAC46   ----------->GT1           <---------ANAC58<---------ANAC58  <--------   acgattcgagttcccaagctagtctcagcaaagacagtaacttcttctgcaatagccattgtgtgagagagcagtggcgagaatttggttcctgttgttg  20899100                <-------TEIL           <---------AHL20(2)           --------->AHL20(2)    ----------->GT1                                                         --------->ANAC58    --------->LBD16             --------->ANAC58                          --------->MYB52(1)   <---------HSFB2a(2)          --------->ANAC58                     --------->TOE1(2)   --------->HSFB2a(2)--------->ANAC46                        <---------AHL20(2)  <---------LBD16--------->ANAC46         <----------ID1     --------->AHL20(2)<-----------RAV1(2) -MYB46(3) --------->AHL20(1)   --------->ANAC46             --------->ICU4 --------->ANAC58   ttcatcgggaaaataaaatacatcacgctgtttcaagtcatgttaagacaaatgtttgcagtatttattaacctagaaacggcaggctgtgcaagtgtat  20899200                                           <---------ICU4                                           --------->YAB1                                     --------->ANAC46                                    <---------LBD16                                    ------>ZmHOX2a(1)                                <---------ARR14(2)                                --------->ARR14(2)                       --------------->AtSPL3                       <---------------AtSPL3     <----------DOF2                     --------->MYB52(1)   --------->ICU4                                    <--------                  --------->ANAC46  --------->LBD16       <----------DOF2        --------->TOE1(3)                <-----------GT1<---------MYB52(1)<---------ICU4        *TSS      --------->TOE2(3)<--   atttcgaaagactgaaattcacaaaacggtaccgtttcctcggaatcatcatctttccctctttccttccaccgagagcaaaacctaaaaatggtcgttt  20899300                                                                                          -----------                                      --------->ANAC46                                <---------ANAC46                                      --------->ANAC58                                <---------DEAR3(1)                                      --------->ANAC58                               <------NtERF2                                 <------NtERF2                                       ------>NtERF2                                --------->LBD16                                      --------->ATERF1(1)                                ------>NtERF2                                        <---------LBD16                                <---------DEAR3(2)                                   <---------At4g35610                                <---------ATERF1(1)                                 ------>NtERF2                               <---------DEAR3(1)                                  <---------DEAR3(1)                               --------->DEAR3(1)                                  <---------RRTF1(2)                               <---------ATERF1(2)                                 <---------RAP2.3(2)                               --------->ATERF1(2)                                --------->At4g35610                               --------->DREB2C(2)                                <---------At4g35610                               --------->RAP2.3(3)                                <---------LBD16                               --------->RAP2.3(2)                               <-----------RAV1(1)                               --------->RRTF1(2)                              ----------->RAV1(2)                              --------->ATERF1(1)                              ------>ZmHOX2a(1)                              --------->ERF1                              <---------ZAT2 ----------->HVH21                              --------->RAP2.3(1)                         --------->At4g35610 <------                              <---------LBD16                             <---------At4g35610--------                              --------->ORA47(2)                      <-----------HVH21 <------NtERF2                              <------NtERF2                         --------->At4g35610<---------ATERF1(1)                             <---------RAP2.3(1)                    <---------At4g35610--------->LBD16 -MYB46(3)                   <---------ATERF1(1)                 --------->At4g35610<---------RRTF1(1) -------GLK1(2)         ---------->DOF2         <----------DOF2  <---------At4g35610<---------RAP2.3(1)   gattctctctctctctctccgttcaaaaatgcgccggcacaagcgatggcctttgaggtctcttgtctgcagcttcagctcctctgcggcggagacagtt  20899400                             <---------DAG2                             <----------DOF2                           <------NtERF2                         <---------RAP2.3(3)                         <---------RAP2.3(2)                         <---------DEAR3(1)                        --------->ATERF1(1)                        <------NtERF2                       <---------ERF1                       <---------RAP2.3(1)                       ------>NtERF2                       <---------ATERF1(1)                       <---------RRTF1(1)                      <---------O2                      <---------DEAR3(1)                      <---------RAP2.3(2)                      --------->O2 --------->LBD16                   ----------->HVH21                   --------->DEAR3(1)                  --------->At4g35610                                            ------>ZmHOX2a(2)                  <---------At4g35610                                          <-----------ARR10            <------NtERF2<---------RAP2.6(2)                                   --------->ARR11(3)            --------->At4g35610    <-------GAMYB                               <---------ARR11(3)            <---------At4g35610   <---------ANAC46                          <---------WOX13(1)            --------->ZAT2------>NtERF2                                --------->At4g35610 ->AtMYB77  <---------ZAT2<---------RAP2.3(1) ----------->HVH21    ----------->HVH21 -GAMYB--------->ANAC46<---------DEAR4(2)    <-------MYC3      --------->HSFB2a(2) --->GT1------->GAMYB--------->ATERF1(1)     ------->MYC3      <---------HSFB2a(2)             ------   actacttcaacggcagcttcagcgacggcggcttttccgttgaagcatgtgacaaggtcgaacttcgagacgacgctgaatgatctacgctcactcgtaa  20899500                                                                                               ------                                                                                           <---------ARR14(2)                                                                                           --------->ARR14(2)                                                                                          <---------At4g35610                    <---------WRKY18(1)                                                   --------->At4g35610                   --------->WRKY12    ----------->HVH21                               --------->TGA2(2)                   ----------->HVH21 <---------TGA1a                                  <-----------HVH21                  <---------WOX13(1) <---------ANAC58                                 <-----------TGA1                 <-------GAMYB       <---------O2                                    ================                 ==============================MYC_MYB <------NtERF2                 --------->bZIP60(1)              <------NtERF2          --------->TGA1a--------->LBD16                  <---------bZIP60(1)          <---------ANAC58           --------->bZIP60(1)<---------ANAC58             --------->bZIP60(2)          <---------ANAC46           <---------bZIP60(1)<---------ANAC58             <---------TGA2(1)       --------->GLK1(1)             <---------ANAC46 --------->REM1(2)              <---------TGA1a      --------->ARR14(2)             --------->O2  <---------ANAC58                  --------->O2      <---------ARR14(2)             <---------bZIP60(2)<---------ANAC46             <---------O2 ---  --------->At4g35610         ----------->HVH21    <---------ANAC58                  --------->TGA1a  <---------At4g35610       --------->At4g35610    <---------ANAC46              --------->SPL7------  <------NtERF2<---------ANAC46      <---------ANAC58--------->ALFIN1<---------ZAT6  --------->TGA2(1) ---->DOF2<---------ANAC58  <---------At4g35610--------->ZAT18   ------>ZmHOX2a(1)   ================   aggctgcagatttcgtggcgattgaccttgagatgactggcgtgacaagcgctccgtggcgagactccttagagttcgaccgctacgacgtcagatacct  20899600  Previous    Next  AGI:  At1g55860.1    Description:  UPL1 (UBIQUITIN-PROTEIN LIGASE 1); ubiquitin-protein ligase. Identical to E3 ubiquitin-protein ligase UPL1 (UPL1) [Arabidopsis Thaliana] (GB:Q8GY23;GB:Q9LG27;GB:Q9M7K7); similar to UPL2 (UBIQUITIN-PROTEIN LIGASE 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G70320.1); similar to putative ubiquitin-protein ligase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD22340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45141.1); similar to hypothetical protein OsJ_027403 [Oryza sativa (japonica cultivar-group)] (GB:EAZ43920.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro doma Range:  from: 20883132    to: 20899059    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55870.1    Description:  AHG2/ATPARN; ribonuclease. Identical to Poly (PARN) [Arabidopsis Thaliana] (GB:Q9LG26;GB:Q4W7J2); similar to CAF1 family ribonuclease [Arabidopsis thaliana] (TAIR:AT3G25430.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76999.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941) Range:  from: 20899271    to: 20902087    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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