Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                    --------->ZAT18                 --------->ALFIN1                              --------->DAG2                    <-----------RAV1(1)                             ---------->DOF2                    <---------bZIP60(2)                         <------ZmHOX2a(1)                      <---------REM1(1)                        ----------->GT1                  <---------HSFB2a(2)               --------->At4g35610                       <---------ANAC46                  <---------LBD16          --------->AtLEC2                     <---------MYB46(3)                  --------->HSFB2a(2)      --------->ANAC58                    --------->ALFIN1   --------->At4g35610      <---------O2      --------->ANAC58                 <---------DEAR3(1)    ----------->RAV1(2)      --------->ALFIN1  --------->ANAC46 --                <---------ORA47(1)--------->ZAT14     <---------ARR11(3)        <---------ALFIN1 ---- <------NtERF2 <------ZmHOX2a(1)  <---------ZAT18     --------->ARR11(3)    --------->GLK1(1)   <----   ggtgccaatgtaagtgaggacggtggaggataaaagtgaacacctgagcaagtgaagttctcggagatgtggcccgagaactccacgcacagaagcagcg  20775100                                                     ------->PIF4                                                     ------->MYC3                                                     <-------PIF4                                                     <-------MYC2                                                     ------->MYC2                                                     <-------MYC4                                                     ------->PIF5                                                     <-------MYC3                                                     <-------PIF5                                                     ------->MYC4                                                    --------->ANAC58                                                    --------->ANAC55(2)                                                    <---------ANAC55(2)                                                    --------->TGA1a                                                    <---------TGA1a                                                    --------->ANAC58                                                  <------------OsbHLH66                          <---------ZAT2          <---------ALFIN1                                ---     <------NtERF2        --------->ZAT2         <---------ZAT2                         ------>MYB83    --------->LBD16       --------->At4g35610--------->ANAC58              --------->LBD16        ---   <---------ANAC46       ----------->RAV1(2)--------->ANAC46             --------->HSFB2a(2)     ---  <---------LBD16         <---------At4g35610--------->ANAC58            --------->SPL7 --------->MYB52(1) -------->DOF2         <---------At4g35610 ===================MYC_MYB    <---------LBD16------>MYB46(1) ----->DOF5.7(2)       --------->At4g35610 ------->GAMYB               <---------SPL7 <---------MYB59 ------DOF2      <---------ZAT6           --------->MYB46(3)      <-------TEIL      -----------------   ttaaggcggagacaattcagagttaagctgctgagtccgatacaaccacgcagcacgtgattcagagtttcatcgtccggagagaaaacctaacagagaa  20775200         <------ZmHOX2a(2)  --------->HSFC1(2)  <---------HSFB2a(1)  <---------HSFC1(2)  --------->HSFB2a(1)                                             --------->MYB52(1) ------>ANAC58                        <---------ARR11(3)--------->ARR14(2) ------>ANAC58                        --------->ARR11(3)--------->GLK1(2)           <------MYB46(1) -------->GT1                      <---------AHL20(2)   <---------ARR14(2)          <------MYB83 ------->ANAC81                    --------->AHL20(2)  <---------GLK1(2)    <------ZmHOX2a(2)   acgaaaattcgatcaatttcatctctattcagaaaaataaaatctccaaattgacgagaatcggaaacttacagagagatcgagggaggtaagagaagga  20775300                                                                   ------>ZmHOX2a(2)                                                                  <------ZmHOX2a(2)                                                                 <---------AGP1                  <------NtERF2      --------->ANAC58            --------->ARR14(2)                 <                <---------DEAR3(1)--------->ARR14(2)             <---------ARR11(3)                 -                --------->ALFIN1  <---------ARR14(2)             <-----------ARR10                  <               <---------LBD16 <---------ANAC46          --------->GLK1(2)                          <              ------->GAMYB  ----------->GT1            --------->ARR14(2)                          -           --------->MYB52(1)<---------MYB46(3)         <---------GLK1(2)                           -      <------NtERF2         <---------AtMYB61 --------->ANAC58   --------->AGP1                     <     --------->LBD16--------->At4g35610       --------->ANAC58   --------->ARR11(3)                <-    --------->RAP2.6(2)     --------->ALFIN1 <---------LBD16     <---------ARR14(2)       --------->At4g35610    --------->LBD16 <---------At4g35610    ----------->HVH21    <---------CCA1(2)         <---------At4g35610   <---------LBD16--------->ATERF1(1)--------->ANAC58 ----------->ARR10                <---------At4g35610   agaacgccggaaacaacggcggagcggagagtggtggaaacgcatgcgacggaacagagattctccagatctaaacgcttcagtatttcttctgctaaca  20775400     <-----------TGA1     <-----------HVH21    --------->bZIP60(1)    <---------bZIP60(1)  ------>ZmHOX2a(2)  ===================HOX2a_HOX2a --------->GLK1(1) ====================HOX2a_HOX2a <------ZmHOX2a(2)                                                                                 <- ---------AGP1                                                                                    --- -------->AGP1------>ZmHOX2a(1)                                                                   --- -----------ARR10           <---------GLK1(2)                                                     --- ---------ARR14(2)          <---------ARR14(2)                <---------GLK1(2)                   --- -------->ARR14(2)          --------->ARR14(2)              --------->LBD16                      ---- -------->ARR11(3)   <---------YAB1                        <---------HSFB2a(2)                   <--- ---------ARR11(3) --------->YAB1                          --------->HSFB2a(2)                  ----- --------CCA1(2)  --------->ICU4                          <---------LBD16                      <-----   cagatctcgtcacttcctccatgatgaacgaattctctctctccctctccaattccaattcccagaatttccaattcaatcttcttcccctcttgagccg  20775500                                      <---------ANAC58            --------->ATHB12          <---------ANAC58       --------->ARR11(3)            *TSS --------DOF5.7(2)                <---------ICU4 ------>WRKY38(1)                --------->ICU4 -------->HVH21                  <---------YAB1 ------>WRKY12          <------ZmHOX2a(1)                           --------->MYB52(1)      --------- ------>WRKY45        <---------TOE2(2)     ------>NtERF2   --------->YAB1                 -------->P ----->DOF5.7(2)      <---------TOE1(2)     <---------RAP2.6(3) <-----------GT1          --------->MYB46(3) ------MYB52(1)    --------->ANAC58  <---------ICU4        <---------YAB1              ------>MYB46(1) ---->At4g35610    --------->ANAC58 <---------YAB1         --------->ICU4  --------->AHL20(2)    <--- ----MYB46(3)<---------ANAC46  --------->YAB1      <---------LBD16--------->MYB46(3)   ------>MYB83   ttgacgaaagttattgtttggacgcaggattactcataattcttgccgacttcttcgggtcattataaaccatcggtttaaataaaaccaaacaacctgg  20775600                                                          --------->AHL20(1)                                                          <---------AHL20(1)                                                          --------->AHL20(2)                               --------->At4g35610       --------->AHL20(2)                               <---------At4g35610       <---------AHL20(2)                         <---------ARR14(2)          <---------AHL20(2)           --------->RAP2.6(3)                --------->AHL20(2)                  <---------AHL20(2)   ----------->GT1  --------->YAB1                <---------AHL20(2)                  --------->AHL20(2)   --------->ANAC55(2)  --------->MYB52(1)<-----------GT1             <---------RVE1(1)        <---------ANAC55(2) <------- -->RAV1(2)    --------->AHL20(2)         <---------ANAC46<---------AHL20(2)<-----------GT1  -------- -----P ------------>CBF --------->ARR14(2)     <---------CCA1(1)    <---------GLK1(2) <----------DOF2   tagaaaccggttcaatatttaatttcggttctgagatgaagatggtttggatattttaattttattttgcagattatgtaacaattcggcttttataaca  20775700                                                    <---------ZAT14                                                    --------->ZAT18                  --------->YAB1                                                    --------->ZAT14          --------->HSFB2a(2)                                                  --------->bZIP60(1)        <---------HSFB2a(2)                                      <---------------AGL15              --------->GLK1(1) --------->TOE1(3)                           <------MYB83 <---------MYB52(1)     <---------KAN4(1) <------ZmHOX2a(2)                           <------MYB46(1)        <---------bZIP60(1)    <---------GLK1(1)--------->ZAT6                          --------->MYB59      ----------->HVH21--------->KAN4(2)====================                       <---------ARR14(2)     --------->At5g28300<---------YAB1 --------->ARR11(3) ----GT1               --------->ARR14(2)     <-----------HVH21--------->KAN4(1)--------->ARR14(2) ->YAB1     <---------TOE2(2)        ----------------->AGL1  <---------GLK1(2)  <---------ARR11(3)   atttgggcttaacccatgttttgcaaatttggtccgtcttccattagcggtgacttcactatagattattctagggtttccagatcatcgtaaccctaga  20775800                                                                             <-----------TGA1                                                                             <-----------HVH21                                                                            --------->ANAC58                                                                            =========================bZIP_DOF                                                                            --------->ANAC58                                                                            --------->ANAC46                                                                            --------->bZIP60(2)                                                                            =========================                                                                            --------->TGA1a                                                                            <---------O2                                                                            <---------ANAC55(2)                                                                            <<<<<<<<<<HY5                                                  <---------GLK1(2)         --------->ANAC55(2)     <                                       --------->At4g35610 --------->At4g35610                      <                                       <---------ZAT14     --------->ZAT14  --------->ANAC55(1)     <                --------->ANAC46       --------->ZAT14<---------YAB1        --------->O2            <        ----------->TBP             --------->At4g35610    <---------At4g35610--------->TGA2(2) xxxxx        --------->AHL20(2)          <---------At4g35610    <---------ZAT14 <-----------STF1  <-------      ------>ZmHOX2a(1)     --------->ANAC55(2)   --------->ARR11(3)       <-----------bZIP911(2) --- ============HOX2a_HOX2a <---------GLK1(2)      ----------->ARR10 <------ZmHOX2a(1) *TSS  <----------DOF2   gtagcctcctataaatacacacagatagatacttgttcatctgcagagtttagattttgactgcagaaggataagaacacgtcatctctgtgcttctttg  20775900                                                                   ----------->GT1                                                                 <---------TGA2(2)                                                           <---------ANAC46                                                           <---------ANAC58                                          xxxxxxxxxxxxxxx>smallRNA(fl3)                                          xxxxxxxxxxxxxxxx>smallRNA(se3)                                        xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                        xxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                        xxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)             --------->DAG2            xxxxxxxxxxxxxxxxxxx>smallRNA(se3)            --------->DAG2             xxxxxxxxxxxxxxxxxxx>smallRNA(s2)       <---------HSFB2a(2)            xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->HSFB2a(2)            xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <----------DOF2                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <---------DAG2                    xxxxxxxxxxxxxxxx>smallRNA(i)----------->STF1 <---------ALFIN1              <---------DAG2<---------ETT(2) --------->REM1(2) ==============bZIP_DOF        <----------DOF2     --------->ANAC58<---------bZIP60(1)             -- ---------ZAT14          --------->ATHB12xxxxxxxxxxxxxxxxx>smallRNA(le3)                           <- ---------REM1(2)       <---------YAB1xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                            -- -----------------AGL1<---------bZIP60(1)xxxxxxxxxxxxxxxxx>smallRNA(fl3)                           <- -----------------AG  --------->bZIP60(1)xxxxxxxxxxxxxxxxx>smallRNA(se3)       --------->ARR11(3) <-- xxxxxxxxxxxxxxx>smallRNA(si3)<---------ANAC58     --------->ANAC58--------->bZIP60(1)  <---------TOE2(3) ---DOF2   ---------->DOF2    <---------ANAC58   ---------->DOF2----------->TGA1--------->GLK1(2) === ------>ETT(2)     <---------YAB1    --------->LBD16       <---------ANAC58    <---------ARR11(3)----   tctacacttttggaaaaggtgatgatatcattgcttttccccaaatgtagacaaagcaataccgtgatgacgttatatggagattttgttgatgttacga  20776000  Previous    Next  AGI:  At1g55590.1    Description:  F-box family protein. Identical to F-box protein At-B (ATB) [Arabidopsis Thaliana] (GB:Q9ZWC6;GB:Q9ARM4;GB:Q9ARM5); similar to F-box family protein (FBL10) [Arabidopsis thaliana] (TAIR:AT2G17020.1); similar to hypothetical protein [Capsella rubella] (GB:CAC36388.1); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 20772986    to: 20775537    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g55591.1    Description:  MIR158b; miRNA Range:  from: 20775884    to: 20775968    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version