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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                     --------->TOE2(2)
                                                                                     <---------LBD16
                                                            <------ZmHOX2a(2)        --------->TOE1(2)
                                                            =======================HOX2a_HOX2a
                                                           <---------ARR11(3)       ----------->RAV1(2)
                                                           --------->ARR11(3)  <--------HAHB4
                                                       ---------->DOF2         <---------ICU4
                                                     ==============HOX2a_HOX2a<------ZmHOX2a(2) ====
      <---------HSFB2a(2)                            ================================HOX2a_HOX2a----
      --------->HSFB2a(2)                            <------ZmHOX2a(1)        <---------YAB1--------
--------->ATHB12                                   --------->LBD16            ======================
---------ATHB12                                   --------->HSFB2a(2)        --------->ARR11(3) <---
-----ATHB12               --------->AHL20(2)      <---------LBD16            <---------ARR11(3)<----
--ZmHOX2a(2)       ----------->GT1                <---------HSFB2a(2)       <------ZmHOX2a(1) <-----
 
caatgactgccagaaaacaaaacagttaaaaaaatcaacaattctgaaattttccaggaaaagatcgatacagagaataggatcattacctgggaattag  20183900
    <----------DOF2   ------>ZmHOX2a(1)
========================HOX2a_HOX2a                                  <-----------TBP
----->YAB1       ------>ZmHOX2a(2)                              <------------CBF                  --
->ICU4         <---------ARR11(3)                           --------->ANAC46                 <------
===HOX2a_HOX2a --------->ARR14(2)                           --------->ANAC58                 -------
---ZmHOX2a(1)  --------->ARR11(3)                           --------->ANAC58               ---------
-----YAB1      <---------ARR14(2)                         <-----------GT1                  <--------
----TOE2(3)   <---------CCA1(2)                 *TSS    <-----------GT1             --------->ANAC46
 
gataaccctttccaattggatcttcctcttcttcgatttgatagtatggggtttgaaattttcactccattgatatatagtgagtaaacaccagtgagct  20184000
                                                                    <---------AHL20(2)
                                                              <-----------TGA1
                                                             --------->ANAC58
                                                             --------->O2
                                                             --------->ANAC46
                                                             --------->ANAC58
     <---------HSFB2a(2)                                     --------->TGA1a
     --------->HSFB2a(2)                                     <---------O2
--------->HSFC1(2)                                           --------->bZIP60(2)
<---------HSFC1(2)              <---------ZAT14              ==========================bZIP_DOF
--------->HSFB2a(1)             --------->ZAT14             <-----------STF1
<---------HSFB2a(1)             --------->ZAT18            <---------ALFIN1
-------->DOF2     <---------HSFC1(1)                  <---------HSFC1(2)    <----------DOF2
---At4g35610      <---------HSFB2a(2)                 --------->HSFC1(2)   <-----------------AGL3
-->At4g35610      --------->HSFC1(1)               ====================bZIP_DOF--------->ATHB12
>ZAT14            --------->HSFB2a(2)              ---------->DOF2 --------->AHL20(2)
-ZAT18--------->LBD16           <---------ZAT18 ----------------------->TaNAC69(2)
 
agaaagttccagagaaaatttctagaagtaactagtgaacttgagagttgtttcaaaagcttccacgtcattaaatctccttttattgggccttataagt  20184100
                                                                           --------->ATHB12
                                        ---------->ID1           <---------CCA1(2)     ---------->DOF2
         <---------MYB52(1)         <----------DOF2    <---------YAB1     <---------AHL20(2)
<---------AHL20(2)          <---------WOX13(1)        <---------AHL20(2)  <---------YAB1
 
tatttataggccgtttagcacattggacttgatttatgtctttgttctattttgtatttttatttcttatatctgtttttattgggccttgaaagttatt  20184200
                                                                            --------->YAB1
                                                                         ------>MYB83
                                                                         ------>MYB46(1)
                                                                         --------->MYB52(1)
                                                                       <---------MYB111(1)
                                                                       <---------MYB59
                                                                       <---------MYB52(2)
                                                                       --------->AtMYB61
                                                                       <---------MYB111(2)
                                                                       <---------MYB46(2)
                                                                     ------>MYB46(1)             ---
                                                                     -------->P                 ----
                                                                     ------>MYB83              -----
                                                                   <---------MYB46(2)      ---------
                                                                   <---------MYB111(1)   -----------
                                                                   --------->AtMYB61     --------->ANAC58
                                   <---------YAB1                  <---------MYB59       --------->ANAC58
 
ccaggccttagcccattagacttgatttatctcgttttattttagttagagtttttgagacttgagacaacctacctaaccatactatagacaagaaaat  20184300
                                           <---------ARR14(2)
                                           --------->ARR14(2)
------>AHL20(2)                   <---------MYB52(1)                                  --------->TOE2(3)
----->YAB1                       <-----------HVH21                                    --------->TOE1(3)
---->AHL20(2)                   --------->ANAC46                         ---------->DOF2 ---------->DOF2
>AHL20(2)                   --------->GLK1(1)             --------->MYB52(1)       <-----------GT1
>GT1<----------DOF2         <---------GLK1(1) *TSS       ------>ZmHOX2a(1)   --------->YAB1
 
aaaaatacttttgtatattagagaaattttgaaatccgtcagtgtgtatattcaatattcctaacgaaaaaatggccaaagcataaataccttatagcga  20184400
                <-----------GT1                                               --------->DAG2
              ---------->DOF2                                           <---------TOE2(3)
           --------->TOE2(3)                                          ---------->DOF2
           --------->YAB1 <---------ARR14(2)                        <---------YAB1<---------ZAT14
           --------->TOE1(3)                                      <---------------AGL15
         <---------At5g28300   <-----------HVH21                 <---------YAB1  -------------------
        <-----------GT1   --------->ARR14(2)                <----------DOF2---------->DOF2     <----
 
tatttgagtatttaccataaaaccattcgaatactgtcacggttctaaatttctaatattgttcttttgttattaaaggaaagagtgaagggtgttttcg  20184500
                                                                             <------ZmHOX2a(2)
                                                                            --------->AGP1
                                                                            <---------ARR14(2)
                                              <---------DAG2                --------->ARR14(2)
                                          ----------->HVH21          ------->TEIL
                                          --------->WRKY38(1)        --------->GLK1(2)
                                          --------->WRKY12           --------->ARR14(2)
                                         <---------MYB52(1)          <---------ARR14(2)
                                        --------->At4g35610          <---------ARR11(1)
                                    <---------ARR14(2)               <-----------ARR10
                                    ------>MYB46(1)                 <---------ARR14(1)
       --------->ARR14(2)           ------>MYB83                    <---------CCA1(2)            ---
       <---------ARR14(2)           --------->ARR14(2)           <---------At4g35610             ===
      --------->GLK1(1)           <---------MYB59            <---------MYB52(1)              -------
   >>>>>>>>>MYB98                --------->ANAC55(2)         <-----------HVH21               <------
  <-----------GT1        ------->GAMYB<---------LBD16       <---------DEAR3(2)               <------
---->TaNAC69(2)       --------->MYB52(1)--------->LBD16    <---------DEAR3(1)=======================
-------TGA1    ----------->GT1   <---------ANAC55(2)  <---------ALFIN1     --------->At4g35610  ----
 
tcatttaacatatccatcgggtcaataacggagattacctatccggtgaccttatcccctcgccggtgagcgaatctcagatccaaaattttgcaaaatc  20184600
        <-----------GT1
   ------>ZmHOX2a(2)
  <------ZmHOX2a(2)                                                            <-----------ARR10
 --------->ARR11(3)                                                            --------->GLK1(2)
 <---------ARR14(2)                                                           <---------ARR14(2)
 <---------ARR11(3)                                                           <---------GLK1(2)
 --------->ARR14(2)                                                          --------->HSFB2a(1)
--->ZmHOX2a(1)                                         <-------TEIL          <---------HSFB2a(1)
==========HOX2a_HOX2a                          ------>NtERF2                ----------->ARR10
-->ARR14(2)                                   --------->DEAR3(1)          --------->LBD16
---ARR11(3)                                 <---------ATERF1(1)          --------->LBD16         ---
---ARR14(2)--------------------->WRI1     --------->SPL7                <---------LBD16 <-----------HVH21
====HOX2a_HOX2a                          <------ZmHOX2a(1)              <---------HSFB2a(2)      ---
----->TOE2(3)                     <---------AtLEC2    --------->GLK1(2)<---------LBD16 <----------DOF2
 
ctcagatcgtcttaccttctccgaatcgatcgatttttcatggaggacgacgacgagattcagtcaattccatctccgggagattcttccctttcaccac  20184700
                                          ------>NtERF2
                                      <---------ANAC46
                                      <---------DREB2C(2)
                                      <---------DEAR3(1)
                                    --------->MYB52(1)
                                 ========================================MYC_MYB
                                 --------->bZIP60(1)
                                 <---------TGA1a
                                 <---------bZIP60(2)
                                 --------->TGA1a
                                 =================================================bZIP_DOF
                                 <---------ANAC55(2)
                                 <---------bZIP60(1)
                                 --------->O2
            ------>NtERF2   --------->MYB52(1)
            --------->LBD16================MYC_MYB
            <---------At4g35610  <---------O2   <---------ANAC46       <----------DOF2
           --------->ANAC46------->GAMYB --------->ALFIN1             <---------ANAC58
           --------->DEAR3(1)    --------->ANAC55(2)                  <---------ANAC58
          <---------LBD16 --------->MYB46(3)   <------NtERF2      --------->LBD16
      ------>ZmHOX2a(1)   <---------MYB52(2)  <---------RAP2.6(3)------->GAMYB
   ------>ZmHOX2a(1)      <---------MYB55(2)--------->ATERF1(1) <---------LBD16
  <---------ALFIN1      ----------->RAV1(1)<------NtERF2       --------->MYB52(1)
------>ANAC58   <---------ARR14(2) ----------->HVH21         --------->MYB46(3)                    <
------>ANAC58   --------->ARR14(2) ----------->TGA1        --------->AtMYB61                   -----
 
aagctcctccttctccgccgattttgccaacaaacgacgtgacggtggccgtcgtgaagaaaccacaaccggggctttcttctcaatctccgtccatgaa  20184800
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AGI:  At1g54050.1   
Description:  17.4 kDa class III heat shock protein (HSP17.4-CIII). similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45570.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61792.1); contains InterPro domain HSP20-like chaperone (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20 (InterPro:IPR002068)
Range:  from: 20183090    to: 20183949    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g54060.1   
Description:  transcription factor. similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G14180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45576.1)
Range:  from: 20184347    to: 20185992    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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