Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<----------
ID1
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
-----
ANAC55(2)
--------->
DAG2
-----
ANAC46
<---------
YAB1
---------->
DOF2
------>
GT1
<----------
DOF2
<-----------
GT1
---------->
DOF2
gtataaacacgacaaaaattctttaagaagagttttatttcgatatgattcaaaaagtttcaaaagctgttatagttcgatttcggtgtgttatccatat
20101800
<-----------
GT1
--------->
AHL20(1)
--------->
AHL20(2)
-------------
<----------
DOF2
<-----------
RAV1(1)
<---------
ANAC46
<---------
At4g35610
--------------->
AGL15
<---------
YAB1
--------->
At4g35610
<-----------
GT1
<---------
ICU4
--------->
DAG2
--------->
ATHB12
--------->
YAB1
--------->
AHL20(2)
--------->
ICU4
---------->
DOF2
<---------
YAB1
---------->
DOF2
===============================================
aactaaaaagttggacagctttcattgaaatatactactcaaagaataagaaattactagatttattatgttgtctcatcatgtttatgacttatatgag
20101900
<---------
YAB1
--------->
AHL20(2)
<---------
AHL20(1)
<-----------
GT1
--------->
AHL20(1)
--------->
ALFIN1
--------->
YAB1
<---------
AHL20(2)
<-------
MYC3
<---------
GLK1(1)
--------->
ANAC58
------->
MYC3
--------->
GLK1(1)
<---------
ATHB12
<-----------
GT1
-->
AGL15
---------->
DOF2
------>
ZmHOX2a(1)
--------->
AtLEC2
--------->
YAB1
--------
===
MADS_MADS
--------->
ALFIN1
--------->
At4g35610
<-------
TEIL
--------->
ANAC58
-----------
tatcaacgtggatgaaagtggtcgcttcttcctcatcggaaatcaaaataccgcatgttcatacaaatcaagaaaattataatttacaaatattgtaaag
20102000
<---------
ICU4
<---------
ICU4
--------->
ICU4
--------->
TOE2(2)
--------->
AHL20(2)
--------->
TOE1(2)
<---------
ATHB51
----
<---------
AHL20(2)
<---------
MYB59
<---------
ATHB12
--------->
ANAC58
--------->
ATHB51
------->
TEIL
<---------
AHL20(2)
--------->
ANAC58
<---------
ICU4
--------->
GLK1(1)
--------->
ANAC58
--------->
ANAC58
--------->
AHL20(2)
<---------
GLK1(1)
--------->
DAG2
--------->
ANAC58
--------->
AtLEC2
--------->
ICU4
<------
ZmHOX2a(1)
---------->
DOF2
<---------
ALFIN1
--------->
ANAC46
-->
DOF2
<---------
AHL20(2)
<---------
TCP16(2)
------->
TEIL
<---------
AHL20(2)
----------->
GT1
>
GT1
--------->
AHL20(1)
--------->
ALFIN1
--------->
ZAT18
<---------
YAB1
--------->
ANAC58
agctaattattttataaacataggatatcaaatgtggacctaaaaaagtttgaaaatgcaccactcaaataattaatgcatacagccaagcaagtaaaac
20102100
<---------
AHL20(2)
------------>
CBF
--------->
AHL20(2)
--------->
AHL20(2)
<---------
At4g35610
<----------
ID1
<-----------
GT1
<-----------
GT1
----------->
TBP
---------->
DOF2
<----------
DOF2
--------->
AHL20(2)
------------>
CBF
<---------
ALFIN1
----->
TOE2(3)
<---------
AHL20(2)
<---------
AHL20(2)
--------->
At4g35610
<-----------
GT1
*
TSS
attagaaagacaaaaaataaatacttttaaacaatttatattatatagtttttcatctcaaaactcaacaatataaaccctattccacc
atcttctattc
20102200
-
-
-
-
-
-
-
-
<XXXXXXXXXXXXXXXXXXXX
MIR1886.2
-
------>
MYB83
--
------>
MYB46(1)
--
--------->
WOX13(1)
---
--------->
MYB46(3)
---
<------
NtERF2
--------->
GLK1(1)
<--
--------->
YAB1
<---------
ARR14(2)
---
<---------
ICU4
--------->
ARR14(2)
<---------
GLK1(2)
----
----------->
RAV1(1)
------>
NtERF2
<---------
CCA1(2)
--------->
ANAC58
----
--------->
ANAC46
--------->
ICU4
---------->
DOF2
<---------
GLK1(2)
--------->
ANAC58
<---
--------->
ANAC58
--------->
YAB1
<---------
ATHB12
--------->
ARR14(2)
--------->
ANAC46
------
--------->
ANAC58
<---------
TOE2(3)
--------->
YAB1
<---------
ARR14(2)
<----------
ID1
<-----
cctcacaaacaacaacattgttaagaata
atggcaccaatcaaagaattcatatccaaattctcagatttcaaaaacaacaagaaactcattctctcctc
20102300
<---------
MYB52(2)
<---------
ALFIN1
--------->
LBD16
----------->
RAV1(1)
<------
NtERF2
<------
NtERF2
------>
NtERF2
<---------
ATERF1(1)
-------->
RRTF1(3)
--------->
ABI4(1)
-------->
RAP2.3(3)
------>
NtERF2
-------->
RRTF1(2)
--------->
RRTF1(3)
-------->
ANAC46
--------->
RAP2.3(2)
-------->
ANAC58
--------->
RRTF1(2)
-------->
RAP2.3(2)
--------->
RAP2.6(2)
-------->
RAP2.6(2)
--------->
DEAR3(1)
-------->
DEAR3(1)
<---------
ATERF1(2)
-------->
ANAC58
--------->
ATERF1(2)
------->
RAP2.3(1)
--------->
RAP2.3(3)
------->
RRTF1(1)
--------------------->
WRI1
------>
LBD16
--------->
ATHB12
--------->
DREB2C(2)
------>
At4g35610
-------->
ATHB1
--------->
ANAC46
-------
ATERF1(1)
--------->
ATHB51
--------->
RAP2.3(1)
--->
NtERF2
--------->
ICU4
--------->
ERF1
----->
ANAC46
--------------->
AGL15
--------->
ORA47(2)
----->
DEAR3(1)
<---------
YAB1
<---------
ATERF1(1)
------
ALFIN1
<-----------------
AGL2
--------->
ARR14(2)
--------->
AtMYB61
<
>
ZmHOX2a(1)
<-----------------
AGL3
<---------
GLK1(2)
--------->
MYB46(3)
<-----------
GT1
<----
----
ATERF1(1)
<---------------
AGL15
<---------
ARR14(2)
------->
GAMYB
--------->
YAB1
------
cgccgcaatagccttgctattattggcctccatagtcggaatcgccgccacaacaacaaaccaaaacaaaaaccaaaaaatcacaactctatcttcgaca
20102400
-----------
--------->
TGA2(2)
<-----------
TGA1
<-----------
HVH21
--------->
TGA1a
------>
NtERF2
--------->
bZIP60(2)
--------->
MYB52(1)
--------->
ANAC58
<---------
ALFIN1
--------->
ANAC46
--------->
MYB46(3)
--------->
TGA2(1)
<---------
MYB55(2)
<---------
TGA1a
<---------
ABI4(2)
<---------
TGA2(1)
--------->
ATERF1(1)
--------->
bZIP60(1)
--------->
At4g35610
--------->
ANAC55(2)
<-----------
HVH21
<---------
bZIP60(1)
--------->
LBD16
<---------
bZIP60(2)
--------->
DEAR3(1)
=============
--------->
O2
--------->
O2
--------->
TGA1a
<---------
O2
<---------
O2
--------->
ANAC58
==============================
bZIP_DOF
<---------
ANAC46
<---------
At4g35610
<---------
GLK1(1)
<------
NtERF2
--------->
ZAT2
--------->
GLK1(1)
--------->
ALFIN1
---------->
DOF2
--------->
ZAT2
<---------
TGA1a
====================
bZIP_DOF
--------->
bZIP60(2)
<---------
At4g35610
<---------
ATERF1(1)
----------->
STF1
--------->
ANAC58
--------->
LBD16
------>
NtERF2
<------
NtERF2
--------->
At4g35610
--------->
ANAC46
--------->
ZAT2
--------->
ANAC46
--------->
LBD16
<------
ZmHOX2a(1)
-----
--------->
ANAC58
<---------
At4g35610
<---------
ZAT2
==============================
bZIP_DOF
--------->
ANAC55(1)
<---------
ZAT2
<---------
LBD16
--------->
ANAC46
--------->
LBD16
<-----------
STF1
---------
ALFIN1
--------->
At4g35610
--------->
At4g35610
<---------
At4g35610
----------->
HVH21
-------
HVH21
--------->
GLK1(2)
--------->
ZAT6
<---------
LBD16
<---------
LBD16
----------->
TGA1
--->
bZIP60(1)
--------->
ARR11(3)
--------->
ZAT14
<-----------
GT1
--------->
DEAR3(1)
<---------
TGA2(2)
tcacacgccattctaaaatctgtttgcagctcaacactatacccggagctctgtttttccgccgtggcagccaccggaggaaaagagctgacgtcacaga
20102500
---------->
DOF2
<---------
MYB111(2)
<---------
MYB46(2)
--------->
MYB46(3)
<---------
MYB111(1)
------>
MYB46(1)
--------->
HSFB2a(2)
--------->
MYB52(1)
<---------
HSFB2a(2)
------>
MYB83
--------->
At5g28300
------>
ZmHOX2a(2)
<---------
MYB46(2)
--------->
At4g35610
<--
<---------
MYB59
--------->
LBD16
<---------
At4g35610
---
<---------
ANAC55(2)
<---------
ANAC46
--------->
GLK1(2)
----
>
HVH21
<-----------
TGA1
-------->
P
<-----------
HVH21
-----
======
bZIP_DOF
--------->
ANAC55(2)
----------->
GT1
--------->
At4g35610
-----------
----->
DOF2
<-----------
HVH21
--------->
AtMYB61
<---------
At4g35610
--------->
DAG2
<-
aagaagtcatcgaagcgtcacttaacctaactaccaaagccgtgaaacacaactacttcgctgtcaagaagctgatcgcgaagagaaaaggtttgacacc
20102600
<---------
MYB46(3)
--------->
ATERF1(1)
<-------
GAMYB
<------
NtERF2
<---------
ANAC46
<---------
ANAC58
<---------
DEAR4(1)
<---------
DREB2C(2)
<---------
RAP2.6(2)
<---------
ANAC58
<---------
DEAR3(1)
<---------
ABI4(1)
----------->
HVH21
--------->
ALFIN1
------->
MYC3
<-------
MYC4
<-------
MYC3
<-------
MYC2
<---------
DEAR3(1)
------->
MYC2
------>
ZmHOX2a(2)
--------->
ANAC46
------->
PIF5
--------->
ARR14(3)
--------->
ANAC58
<-------
PIF5
--------->
ARR14(2)
<---------
DEAR3(1)
------->
MYC4
<---------
ARR14(2)
<---------
TGA1a
<---------
TGA1a
<------
ZmHOX2a(2)
=================
bZIP_DOF
<---------
O2
<---------
ARR14(3)
<---------
O2
--------->
TGA1a
======================
HOX2a_HOX2a
--------->
TGA1a
--------->
O2
--------->
GLK1(2)
--------->
O2
===============
MYC_MYB
-
--------->
MYB52(1)
--------->
ANAC46
=====================
HOX2a_HOX2a
----------->
HVH21
--------->
PIF3(3)
--
<-----------
HVH21
<---------
PIF3(3)
--------->
TOE2(3)
<---------
bZIP60(1)
>>>>>>>>>>
HY5
<---------
ARR11(3)
<-
--------->
bZIP60(1)
<---------
At4g35610
<-----------
ARR10
---------
-------
ANAC46
--------->
At4g35610
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
------>
O2
<---------
ZAT18
--------->
At4g35610
--------->
ALFIN1
<---------
ARR14(2)
----->
LBD16
------>
NtERF2
<---------
At4g35610
<---------
AtMYB61
--------->
ARR14(2)
---->
DEAR3(1)
<----------
DOF2
--------->
MYB52(2)
<---------
MYB46(3)
<---------
ARR11(3)
>
HVH21
--------->
ANAC58
<---------
MYB52(1)
<------
NtERF2
<---------
ICU4
--
----------
HVH21
--------->
ANAC46
--------->
ANAC46
<---------
ALFIN1
--------->
ARR11(3)
---------
gcgtgaggtcacggcgcttcacgactgtttggagacaatcgacgagacgttagatgagctccacgtggcggtggaggatcttcatcagtatcctaagcaa
20102700
Previous
Next
AGI:
At1g53830.1
Description:
ATPME2 (Arabidopsis thaliana pectin methylesterase 2). Identical to Pectinesterase-2 precursor (PME2) [Arabidopsis Thaliana] (GB:Q42534;GB:Q9SSB0); similar to ATPME3 (Arabidopsis thaliana pectin methylesterase 3) [Arabidopsis thaliana] (TAIR:AT3G14310.1); similar to pectin methyl esterase [Solanum tuberosum] (GB:AAF23892.1); similar to pectin methyl-esterase [Nicotiana benthamiana] (GB:AAO85706.1); similar to pectin methylesterase [Nicotiana tabacum] (GB:CAB95025.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Pectinesterase, catalytic; (InterPro:IPR000070); contains InterPro domain Pectin lyase
Range:
from: 20102190
to: 20104557
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version