Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100     <---------YAB1               --------->YAB1         ------->TEIL --------->ATHB12              <---------ATHB12     <---------ATHB12                 --------->AHL20(2) <---------ICU4        --------->ARR14(2)      --------->ANAC58             <<<<<<<<<MYB98 -------->ICU4         <---------ARR14(2)      --------->ANAC46             <---------MYB52(1) ---------YAB1    --------->ANAC58             --------->ANAC58        --------->GLK1(2)        <---- ------>YAB1      --------->ANAC58         <---------AHL20(2)          --------->ARR14(2)       <---- >RAV1(1)  ----------->GT1--------->ANAC46 --------->AHL20(2)          <---------ARR14(2) -----------   ggatgattacagagagaaataagcaaatacacaatcaaggtcgaattaaacgcaatgaatctccaaaattgagcatccgttactgaaaaaaatggaaact  20059800                                                                                         --------->At4g35610                                                                                       --------->ATERF1(1)                                                                                  ------>ZmHOX2a(2)                                                                                --------->ARR11(3)                                                                                <-----------ARR10                                                                                --------->ARR14(2)                                                                                <---------ARR14(2)                                                                                <---------ARR11(3)                                                                               <------ZmHOX2a(1)                        ------>NtERF2                                    --------->LBD16 ------>NtERF2 -----DAG2   <---------DAG2                                     --------->HSFB2a(1)<-----------HVH21 ------DOF2<---------ARR11(3)                            --------->DAG2 <---------ANAC46--------->DEAR3(1) >GT1      --------->ARR11(3)                           ---------->DOF2<---------LBD16<---------ATERF1(1)   ttttggagagagagaccttatggtgaggccaagaacaagtgaagagagaaggaacccagaaggcgaacatttctccgtagaggatcgtcgcagcccaaat  20059900                                                                                                  ---                                                                                                  ---                                                                                                 <---                 --------->At4g35610                                                      <---------CCA1(2)                 <---------At4g35610                                                    <---------ANAC55(2)              <---------MYB52(1)                                                        --------->ANAC55(2)           <------NtERF2                                                             <---------ARR14(2)          ------>NtERF2                              --------->ARR14(2)              --------->ARR11(3)         <---------ALFIN1                            ------->TEIL                    <---------ARR11(3)         --------->DEAR3(1)                         <---------GLK1(2)                --------->ARR14(2)       <-----------TGA1                         --------->At4g35610                ----------->ARR10      --------->ANAC58                         --------->GLK1(2)                  ------>NtERF2  <---      --------->ANAC46                         <---------ARR14(2)          <---------ANAC58      ----      --------->ANAC58   <---------AtMYB61     --------->ARR14(2)          <---------ANAC58------->TEIL    ---------->DOF2   <---------AtMYB61<-----------GT1                 <----------DOF2--------->CCA1(2)    --------->MYB52(1)<-----------RAV1(1)  --------->LBD16 ------>ZmHOX2a(1)     --------->DEAR3(1) <   gagacataacgccaccgtgagcttatggtggtgtttcattttttccgagtatctgaatctcctcccttctcggctttgcttcgccgagatatgtatctaa  20060000          --------->WRKY38(1)          --------->WRKY12          --------->WRKY45                                 --------->ZAT14         --------->DOF5.7(2)                               <---------ARR14(2)        <-------GAMYB                         --------->At4g35610       <---------ANAC46                       --------->ZAT2       <---------MYB46(3)         <-----------HVH21        <---------ZAT14  <-------GAMYB                   ----------->RAV1(1)   <---------ANAC46 <---------MYB46(3)            --------->ANAC58   <---------ANAC58 ------>ZmHOX2a(2)        <---------WRKY38(1) <---------ZAT2 ----->HAHB4             --------->WRKY18(1)  <---------At4g35610 ------>YAB1            <--------ZAP1     <----------CDC5  --------->ARR14(2) ------YAB1             <-----------HVH21--------->At4g35610    *TSS                       <---------ZAT18 ------ATHB12     ---------->DOF2----------->HVH21<---------ANAC58    <----------ID1       --------->ZAT18 ----->ICU4<---------WRKY18(1) --------->ANAC58   <---------ANAC46---------->DOF2        ------->TEIL ---------YAB1  ---------->DOF2--------->ANAC46  <-------TEIL  ----------->GT1 --------->TOE1(2)   tgatcgttgtcgttgaccaaaagagcggtcaagacgcgacagacgctgagctgcgtttgagtataccgaaaaacgccgaaacttgggaatgaatgcgcta  20060100                                                                                                   --                                                                                                -----                                                                                                -----                                                                                         ----------->GT1                                                                                         <---------YAB1                                              <------------CBF     --------->ZAT14     --------->YAB1                                             --------->ATHB12      <---------ZAT14     <---------ICU4                                            <---------YAB1     --------->YAB1         --------->ICU4                       <------------CBF  ---------->ID1    <---------YAB1             <---------ATHB51               <------NtERF2        <----------DOF2     <---------YAB1         ---------->DOF2  -----   ttccaaaactactgggccgagtttatattgggcctatacttttgttgttattgggcctatgcttattagaacagtgacgaacaaagaaataatgaaaaac  20060200                                                --------->LBD16                                               <---------LBD16                                               <-----------RAV1(2)                                           --------->ATERF1(1)                                          <---------ATERF1(1)                                       ------>NtERF2 --------->ANAC58                      <---------ATERF1(1) --------->ANAC58                      --------->LBD16 *TSS      ---------->DOF2            <---------DEAR3(1) ------->MYB52(1)                    <---------LBD16              <---------ALFIN1 ---->ANAC46                    <---------GLK1(2) <------ZmHOX2a(1)                                 < ---->ANAC58             <---------ZAT14  ------>NtERF2         ------->TEIL                   <----- ---->ANAC58             --------->ZAT14 --------->DEAR3(1)<----------DOF2                     <-----   gaaacggaaaactcaaagccgagacagtactctagcttctccggcgactccaggagcgcctctttgcacctctcttcttctctcgctctctgtttctgag  20060300                                  <-----------GT1                              <---------AHL20(2)                          <----------DOF2                       <---------ARR11(1)                       --------->ARR14(2)             <---------SPL7                       ------->TEIL              <---------TOE2(3)                       <---------ARR14(2)       >>>>>>>>>WRKY18            ------->TEIL                      <---------ARR14(1)      <---------WOX13(1)        --------->ANAC46 ---------MYB46(3)    <---------CCA1(2)     --------->ATHB12            --------->ANAC58 ----TOE2(3)        =========================HOX2a_HOX2a                --------->ANAC58    <-------- ----TOE1(3)        ------>ZmHOX2a(2) ------>ZmHOX2a(1)       --------->ARR11(3)   <---------MYB46(3)   gtttgttcgtatttctcatcgatcgtatctttttattttcctctattcattgacgatgtacgaagacattgctcacgaatcgcgattgttgattctttgt  20060400                                                                                  --------->ATHB12                                                                                  <--------HAHB4                                                                                  <---------ICU4                                                                                 <---------YAB1                                                                                 --------->ICU4                                                                               --------->YAB1                                                                               <---------ICU4                                                                              --------->ICU4                                                                              <---------ATHB12        --------->ANAC55(2)                                               <------ZmHOX2a(1)       --------->MYB59                                   <---------ANAC55(2)<---------GLK1(1)       <---------TOE2(3)                     <---------YAB1             <---------TOE1(3)   --------- <---------TOE2(2)                         <---------At4g35610--------->ICU4--------->GLK1(1) --DOF2<---------TOE1(3)          <---------At4g35610    ----------->GT1<---------TOE2(3) ---------->DOF2   gcataggtttaggtatttttgttcgtcttgatgtttagatgagtaagatgatagcgattaagtaaaaatttgctaaggaaatcatcattagggaaagtat  20060500                                         <---------WOX13(1)                                       --------->ATHB12                                     <---------WOX13(1)                                   --------->ATHB12                                  <---------AHL20(2)                                 <---------WOX13(1)                               --------->ATHB12                       <----------DOF2                              --------->AHL20(2)         <---------RVE1(1)                              <---------AHL20(2)         <---------CCA1(1)                         <-                             <---------WOX13(1)         --------->ARR11(3)               --------->ZAT14 -->GT1<---------YAB1      --------->ATHB12             <---------ARR11(3)       <---------WOX13(1)--   ttaggggttttgatttagtagtgagtgagtgattaattgattgattgtttgtttgagagatatttagggcttctttcatgttgaatgactctgttctcta  20060600                                                             --------->HSFB2a(2)                                                          --------->ARR14(2)                      ---                                                    <----------DOF2 ----------->GT1            <-----                                           <---------WOX13(1)<---------HSFB2a(2)               <----- --------ARR11(3)       --------->ICU4   --------->ATHB12 <---------ARR14(2)          <---------YAB1 ------->ARR11(3)     ---------->DOF2   <---------YAB1 <---------TOE2(3)      <-----------HVH21<-----   atatctgttcttagttattgtttataaagatgaatactcactctgattgattttctttaggttctgcaagaagtaaaacatgtcagttcttattgtgacg  20060700  Previous    Next  AGI:  At1g53710.1    Description:  protein serine/threonine phosphatase. similar to unnamed protein product [Vitis vinifera] (GB:CAO68485.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) Range:  from: 20056829    to: 20060064    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g53720.1    Description:  ATCYP59/CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase. similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT2G36130.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47936.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain Cyclophilin-like (InterPro:IPR015891); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Peptidyl Range:  from: 20060201    to: 20063306    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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