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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC46
<---------
ANAC58
--------->
ATHB12
<---------
ANAC58
--------->
HSFC1(2)
<---------
ARR14(2)
------>
ZmHOX2a(1)
--------->
GLK1(2)
<---------
HSFC1(2)
--------->
LBD16
<--
----------->
GT1
<------
ZmHOX2a(1)
--------->
ANAC58
<---------
LBD16
<------
<----------
ID1
<-----------
RAV1(2)
--------->
ANAC58
<----------
TaMYB80
<--------
----------->
GT1
--------->
At4g35610
<----------
ID1
--------->
YAB1
--------->
ARR14(2)
aagaagggaaaaactccttagcttcaggattgagtttcttgaacatggcaacaagcttcttcatttgatcatattccggtttggatttgggtttgaggtc
20034800
<-----------
TGA1
--------->
bZIP60(1)
--------->
ANAC46
--------->
TGA2(1)
<---------
ANAC55(2)
--------->
AtMYB61
<---------
ANAC58
--------->
MYB46(3)
<---------
ANAC58
<---------
ARR14(2)
<---------
bZIP60(1)
<---------
GLK1(1)
--------->
LBD16
<---------
ANAC58
<---------
TGA2(1)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
ANAC55(2)
<-----------
STF1
<---------
ARR14(2)
--------->
ARR14(2)
<---------
ANAC58
<---------
TGA2(2)
-------
At4g35610
--------->
GLK1(2)
<---------
ANAC55(2)
<---------
MYB52(1)
--------->
At4g35610
-----
HVH21
--------->
LBD16
<-----------------------
TaNAC69(2)
--------->
ATHB12
-
TOE2(3)
<---------
LBD16
<---------
ZAT18
--------->
ARR14(2)
--------->
ANAC55(2)
--
atccgattcgatttccggtttagaatccgtgctcttctcaattccgtctccagttccaccatcgttgattacgtcatttgaatcagtggccatctcagtg
20034900
<-
<---------
HSFC1(2)
<------
ZmHOX2a(2)
<--
--------->
HSFC1(2)
=====================================
HOX2a_HOX2a
--------->
HSFB2a(1)
---------->
DOF2
<--
--------->
AHL20(2)
----------->
RAV1(1)
---------
<---------
MYB52(1)
--------->
AHL20(2)
--------->
DAG2
----------
------>
NtERF2
<---------
HSFB2a(1)
<----------
ID1
---------->
DOF2
---->
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
AHL20(2)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
atcgcagccat
taattagatcagaaaattccaaaaaaatataaaacaacaaaaaggatcacaattcaacaaaaaacaagagacagaggaaagaaaaagtt
20035000
<----------
DOF2
<-------
TEIL
<---------
DAG2
----------->
GT1
--------
ZAT18
<---------
ANAC58
-------
ANAC58
<---------
ANAC46
--------->
ANAC58
-------
ANAC58
<---------
ANAC55(2)
--------->
ANAC58
>
DAG2
<---------
ANAC58
<---------
AHL20(2)
--------->
ARR14(2)
>
DOF2
--------->
ZAT14
---------->
DOF2
<---------
YAB1
<---------
ARR14(2)
gcgaacttttccttctctcttcagtcgaatttcgtaaaaaagatgcaaaatttgatgagattaatcgagttttattgaacacccatttcagaatacgaga
20035100
--------->
DAG2
<---------
AtMYB61
--------->
ALFIN1
<---------
ANAC46
<---------
DEAR3(1)
--------->
ZAT18
<---------
ZAT14
<------
NtERF2
--------->
ZAT14
<---------
DEAR3(1)
<---------
AHL20(2)
<---------
HSFB2a(2)
<---
--------->
AHL20(2)
--------->
HSFB2a(2)
>>>>>>>>>
TBF1
-----
--------->
AHL20(1)
--------->
ABI4(2)
>>>>>>>>>
TBF1
--------->
ATHB12
---
<---------
ARR11(3)
--------->
MYB55(2)
------------------------>
ANAC81
<----
<---------
AHL20(1)
<---------
MYB46(3)
<---------
MYB46(3)
>>>>>>>>>
TBF1
<---------
AtMYB61
--------->
YAB1
<---------
ZAT18
--------->
ALFIN1
>>>>>>>>>
TBF1
--------->
ICU4
<----
atgcttaatcgtagacaatatataaatctagtgcggtggtttcagaaggtggcgatggatgagaagaagaagaagaagaaggaatgatgggttttggttt
20035200
<---------
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
---------------
<----------
DOF2
<---------
RVE1(1)
<---------
ANAC58
<---------
CCA1(1)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC46
<---------
ARR11(3)
----
GAMYB
*
TSS
<---------
LBD16
--------->
TOE2(3)
---->
MYB52(2)
--------->
AtMYB61
<-----------
GT1
<-----------
GT1
------->
ID1
--------->
AHL20(2)
<----------
DOF2
<---------
GLK1(2)
-----
MYB46(3)
<---------
ATHB12
<---------
ANAC58
<---------
TOE2(3)
---
-------
RAV1(1)
--------->
WOX13(1)
<---------
ANAC58
----------->
ARR10
<--------
gttgcttaggcctttttctagctcaatcaaatag
accaaaactctctaacaagagtgcttctcttttttttcggactaagatttttttcttaattaattt
20035300
--------->
DAG2
--------->
ANAC55(2)
---------->
DOF2
<---------
AHL20(2)
<---------
ANAC55(2)
----------->
GT1
---------->
DOF2
<---------
YAB1
--------->
AHL20(2)
------>
WRI1
--------->
AHL20(2)
<----------
DOF2
<-----------
GT1
-------
------>
TOE2(3)
---------->
DOF2
<---------
YAB1
------>
ZmHOX2a(1)
<---------
ICU4
<-------
TEIL
-
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
<---------
AHL20(2)
<----------
DOF2
<-----------
GT1
cgtcaaatgtaaaattaaaaagaaaagaaaagttatgattctttattattttatgttcctcttgagggcctttagataattacatattttacacatacac
20035400
<--
<--
----
----
<---
<---
<---------------
AtSPL8
--------------->
AGL15
<----------
DOF2
<----------
DOF2
--------->
ANAC46
-----
<---------
ARR11(3)
<---------
DAG2
<-----------
GT1
<-------
--------->
ARR11(3)
--------->
ZAT14
<---------
ARR11(3)
---------
--------->
GLK1(2)
<---------
ZAT14
--------->
ARR11(3)
--------->
AHL20(2)
--------->
CCA1(1)
--------->
ZAT18
--------->
AHL20(2)
<---------
YAB1
----------->
GT1
--------------->
AtSPL8
--------->
AHL20(1)
<---------
YAB1
<-----------
GT1
--------->
RVE1(1)
<---------
ZAT18
<---------
AHL20(1)
<---------
AHL20(2)
-->
ANAC46
<---------
AHL20(2)
<---------
ZAT6
<---------
AHL20(2)
<---------
AHL20(1)
cagtttattacattttttatattgaaaaaaatctttagtagttttagtacactttttttgctaagaaatatattacacattactaatattattatttaat
20035500
<---------
AHL20(2)
----------->
GT1
-------
YAB1
-------
AHL20(2)
--------->
YAB1
----->
AHL20(1)
<---------
TOE1(3)
<----------
DOF2
------
----->
AHL20(2)
<---------
YAB1
--------->
ALFIN1
<-------
------
AHL20(1)
<---------
AHL20(2)
--------->
ALFIN1
<<<<<<<<<
------
AHL20(2)
<---------
AHL20(1)
<---------
ANAC58
<---------
ZAT6
---->
YAB1
<---------
YAB1
<---------
ANAC58
<---------
GLK1(2)
--
AHL20(2)
--------->
ICU4
<---------
ANAC46
<---------
ZAT14
--------->
ARR11(3)
>
AHL20(2)
----------->
GT1
<---------
TOE2(3)
<---------
AtMYB61
--------->
ZAT14
<---------
AHL20(2)
ataattgttaaaatgttattatttttgttatggatattagatagggtgtggtctttcatatggactgcattgaaatgtgttattttttagatactgttag
20035600
<---------
ICU4
--------->
YAB1
--------->
ATHB12
-------->
HAHB4
--------->
ATHB51
<--------
ATHB1
<--------
HAHB4
<---------
ATHB51
--------->
ICU4
--------->
AHL20(2)
<---------
YAB1
<
--------->
YAB1
<-
--------->
ANAC58
<---
--------->
ANAC58
------
--------->
ATHB51
<---------
YAB1
<-----
--------->
ATHB12
--------->
YAB1
<------
<---------
YAB1
----------->
GT1
---------
--------->
ICU4
--------->
YAB1
<--------
--->
MYB52(2)
<---------
AHL20(2)
--------->
YAB1
--------->
ICU4
--------->
ARR11(3)
--
MYB52(1)
<---------
YAB1
<-----------
GT1
--------->
ANAC46
<---------
ICU4
<--------
<
AtWER
<---------
YAB1
<----------
DOF2
<---------
ICU4
<---------
YAB1
<---------
ARR11(3)
tttgacacatcaacaaaattttgattattttataaacttttattttcttcataattgcaagcaattgttataataattagtccataaatctttggattcg
20035700
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AGI:
At1g53650.1
Description:
CID8; RNA binding / protein binding. similar to CID9 (CTC-Interacting Domain 9), RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT3G14450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63584.1); contains InterPro domain Ataxin-2, C-terminal (InterPro:IPR009818); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:
from: 20032697
to: 20035234
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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