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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                 <---------ANAC46
                                 <---------ANAC58        --------->ATHB12
                                 <---------ANAC58 --------->HSFC1(2)            <---------ARR14(2)
             ------>ZmHOX2a(1) --------->GLK1(2)  <---------HSFC1(2)     --------->LBD16         <--
  ----------->GT1      <------ZmHOX2a(1)         --------->ANAC58      <---------LBD16       <------
  <----------ID1    <-----------RAV1(2)          --------->ANAC58  <----------TaMYB80      <--------
 ----------->GT1--------->At4g35610         <----------ID1       --------->YAB1 --------->ARR14(2)
 
aagaagggaaaaactccttagcttcaggattgagtttcttgaacatggcaacaagcttcttcatttgatcatattccggtttggatttgggtttgaggtc  20034800
                                                                    <-----------TGA1
                                                                   --------->bZIP60(1)
                                                                   --------->ANAC46
                                                                   --------->TGA2(1)
                                                                   <---------ANAC55(2)
                                                       --------->AtMYB61
                       <---------ANAC58               --------->MYB46(3)
                       <---------ANAC58          <---------ARR14(2)<---------bZIP60(1)
       <---------GLK1(1)--------->LBD16 <---------ANAC58           <---------TGA2(1)
 --------->ARR14(2) <---------ARR14(2)  --------->ANAC55(2)       <-----------STF1
 <---------ARR14(2) --------->ARR14(2)  <---------ANAC58         <---------TGA2(2)
-------At4g35610    --------->GLK1(2)   <---------ANAC55(2) <---------MYB52(1)   --------->At4g35610
-----HVH21  --------->LBD16            <-----------------------TaNAC69(2)      --------->ATHB12
-TOE2(3)  <---------LBD16 <---------ZAT18        --------->ARR14(2)--------->ANAC55(2)            --
 
atccgattcgatttccggtttagaatccgtgctcttctcaattccgtctccagttccaccatcgttgattacgtcatttgaatcagtggccatctcagtg  20034900
                                                                                                  <-
                     <---------HSFC1(2)              <------ZmHOX2a(2)                           <--
                     --------->HSFC1(2)              =====================================HOX2a_HOX2a
                     --------->HSFB2a(1)       ---------->DOF2                                   <--
       --------->AHL20(2)                 ----------->RAV1(1)                              ---------
      <---------MYB52(1)      --------->AHL20(2)--------->DAG2                            ----------
  ------>NtERF2      <---------HSFB2a(1) <----------ID1                             ---------->DOF2
---->ZmHOX2a(2)<------ZmHOX2a(2)--------->AHL20(2) <------ZmHOX2a(1)               <------ZmHOX2a(1)
 
atcgcagccattaattagatcagaaaattccaaaaaaatataaaacaacaaaaaggatcacaattcaacaaaaaacaagagacagaggaaagaaaaagtt  20035000
  <----------DOF2                       <-------TEIL
  <---------DAG2            ----------->GT1
--------ZAT18               <---------ANAC58
-------ANAC58               <---------ANAC46                                 --------->ANAC58
-------ANAC58               <---------ANAC55(2)                              --------->ANAC58
>DAG2                       <---------ANAC58                       <---------AHL20(2)   --------->ARR14(2)
>DOF2           --------->ZAT14   ---------->DOF2                  <---------YAB1       <---------ARR14(2)
 
gcgaacttttccttctctcttcagtcgaatttcgtaaaaaagatgcaaaatttgatgagattaatcgagttttattgaacacccatttcagaatacgaga  20035100
                                          --------->DAG2
                                <---------AtMYB61
                                --------->ALFIN1
                              <---------ANAC46
                             <---------DEAR3(1)
                            --------->ZAT18
                            <---------ZAT14    <------NtERF2
                            --------->ZAT14  <---------DEAR3(1)
                  <---------AHL20(2)  <---------HSFB2a(2)                                       <---
                  --------->AHL20(2)  --------->HSFB2a(2)           >>>>>>>>>TBF1              -----
               --------->AHL20(1)--------->ABI4(2)               >>>>>>>>>TBF1   --------->ATHB12---
               <---------ARR11(3)--------->MYB55(2)         ------------------------>ANAC81    <----
               <---------AHL20(1)<---------MYB46(3) <---------MYB46(3) >>>>>>>>>TBF1      <---------AtMYB61
     --------->YAB1         <---------ZAT18  --------->ALFIN1 >>>>>>>>>TBF1     --------->ICU4 <----
 
atgcttaatcgtagacaatatataaatctagtgcggtggtttcagaaggtggcgatggatgagaagaagaagaagaagaaggaatgatgggttttggttt  20035200
                                                                                          <---------AHL20(1)
                                                                                          --------->AHL20(2)
                                                                                          <---------AHL20(2)
                                                                                     ---------------
        <----------DOF2                                                      <---------RVE1(1)
<---------ANAC58                                                             <---------CCA1(1)
<---------ANAC58                                                            --------->ARR11(3)
<---------ANAC46                                                            <---------ARR11(3)
----GAMYB                        *TSS                             <---------LBD16   --------->TOE2(3)
---->MYB52(2)                   --------->AtMYB61                <-----------GT1  <-----------GT1
------->ID1            --------->AHL20(2)                  <----------DOF2  <---------GLK1(2)
-----MYB46(3)         <---------ATHB12               <---------ANAC58     <---------TOE2(3)      ---
-------RAV1(1)      --------->WOX13(1)               <---------ANAC58     ----------->ARR10<--------
 
gttgcttaggcctttttctagctcaatcaaatagaccaaaactctctaacaagagtgcttctcttttttttcggactaagatttttttcttaattaattt  20035300
                         --------->DAG2                                       --------->ANAC55(2)
                        ---------->DOF2    <---------AHL20(2)                 <---------ANAC55(2)
   ----------->GT1 ---------->DOF2       <---------YAB1                     --------->AHL20(2)
------>WRI1--------->AHL20(2)        <----------DOF2                        <-----------GT1  -------
------>TOE2(3)---------->DOF2  <---------YAB1          ------>ZmHOX2a(1) <---------ICU4     <-------TEIL
-AHL20(2)  <---------AHL20(2)  --------->ICU4 <---------AHL20(2)  <----------DOF2    <-----------GT1
 
cgtcaaatgtaaaattaaaaagaaaagaaaagttatgattctttattattttatgttcctcttgagggcctttagataattacatattttacacatacac  20035400
                                                                                                 <--
                                                                                                 <--
                                                                                                ----
                                                                                                ----
                                                                                                <---
                                                                                                <---
                                        <---------------AtSPL8                 --------------->AGL15
                             <----------DOF2    <----------DOF2          --------->ANAC46      -----
                          <---------ARR11(3)    <---------DAG2       <-----------GT1        <-------
                          --------->ARR11(3)--------->ZAT14      <---------ARR11(3)        ---------
                          --------->GLK1(2) <---------ZAT14      --------->ARR11(3)     --------->AHL20(2)
                         --------->CCA1(1)  --------->ZAT18      --------->AHL20(2)    <---------YAB1
                  ----------->GT1       --------------->AtSPL8   --------->AHL20(1) <---------YAB1
    <-----------GT1      --------->RVE1(1)  <---------ZAT18      <---------AHL20(1) <---------AHL20(2)
-->ANAC46     <---------AHL20(2)     <---------ZAT6              <---------AHL20(2)<---------AHL20(1)
 
cagtttattacattttttatattgaaaaaaatctttagtagttttagtacactttttttgctaagaaatatattacacattactaatattattatttaat  20035500
     <---------AHL20(2)
 ----------->GT1
-------YAB1
-------AHL20(2)                                     --------->YAB1
----->AHL20(1)            <---------TOE1(3)      <----------DOF2                              ------
----->AHL20(2)   <---------YAB1             --------->ALFIN1                                <-------
------AHL20(1)  <---------AHL20(2)        --------->ALFIN1                                 <<<<<<<<<
------AHL20(2)  <---------AHL20(1)      <---------ANAC58                                  <---------ZAT6
---->YAB1     <---------YAB1            <---------ANAC58                              <---------GLK1(2)
--AHL20(2)    --------->ICU4            <---------ANAC46      <---------ZAT14         --------->ARR11(3)
>AHL20(2)----------->GT1  <---------TOE2(3) <---------AtMYB61 --------->ZAT14   <---------AHL20(2)
 
ataattgttaaaatgttattatttttgttatggatattagatagggtgtggtctttcatatggactgcattgaaatgtgttattttttagatactgttag  20035600
                                                                      <---------ICU4
                                                                      --------->YAB1
                                                                      --------->ATHB12
                                                                      -------->HAHB4
                                                                      --------->ATHB51
                                                                      <--------ATHB1
                                                                      <--------HAHB4
                                                                     <---------ATHB51
                                                                     --------->ICU4
                                                                     --------->AHL20(2)
                                                                     <---------YAB1                <
                                                                   --------->YAB1                 <-
                                                       --------->ANAC58                         <---
                                                       --------->ANAC58                       ------
                                                --------->ATHB51  <---------YAB1              <-----
                                                --------->ATHB12--------->YAB1               <------
                                               <---------YAB1----------->GT1               ---------
                                               --------->ICU4--------->YAB1                <--------
--->MYB52(2)             <---------AHL20(2)  --------->YAB1 --------->ICU4         --------->ARR11(3)
--MYB52(1)          <---------YAB1      <-----------GT1--------->ANAC46  <---------ICU4    <--------
<AtWER           <---------YAB1  <----------DOF2<---------ICU4 <---------YAB1      <---------ARR11(3)
 
tttgacacatcaacaaaattttgattattttataaacttttattttcttcataattgcaagcaattgttataataattagtccataaatctttggattcg  20035700
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AGI:  At1g53650.1   
Description:  CID8; RNA binding / protein binding. similar to CID9 (CTC-Interacting Domain 9), RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT3G14450.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO63584.1); contains InterPro domain Ataxin-2, C-terminal (InterPro:IPR009818); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677)
Range:  from: 20032697    to: 20035234    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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