Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                <----------DOF2                                             ------>ZmHOX2a(2)                                            *TSS                                           --------->ARR14(2)      <---------ANAC55(2)             <-                                           <---------AGP1   --------->YAB1                    <------                        --------->YAB1     ------->TEIL   <---------TOE2(3)                   -------                      --------->ANAC58     <---------ARR14(2)      ----------->GT1           <-------          ----------->GT1                  <---------ARR11(3)--------->ARR11(3)     <---------------AtSPL8   <---------ZAT6     --------->ANAC58     --------->ARR11(3)<---------ARR11(3) <------------CBF<----   ttttagtgaaaatggaaaaaccccaagcataaatgggtttagatggatctttcaaatttcaaggatattatgtaaaactaaaaattgtagtacatatcat  19864700                                                                          --------->YAB1                                                                         <---------YAB1                                                                       --------->YAB1                                                                       <---------ICU4                                                                      <---------ATHB12                                                                 <---------ANAC55(2)     <-----------GT1                      ----------->HVH21      --------->ANAC58 --------YAB1                           <------------CBF         --------->ANAC58 ---ICU4                             ------------>CBF            --------->ANAC55(2) -->YAB1                        <---------YAB1                   --------->ANAC46 -------->P --YAB1 --------->TOE2(3)   <------------CBF                 <-----------HVH21  --------->MYB46(3) -----YAB1               >>>>>>>>>>>>>>>>>LFY       --------->GLK1(1) --------->ICU4   tactattttacattattttcaaaatcgtcccattgttatttcaattgacatgagaaacccatttgtcacgaaatcatcataaacaaccatatgttgaatt  19864800                                                                                              -------                                                                                             <-------                                          --------->ALFIN1                               <---------AHL20(2)                            --------->ARR11(3)                                     <------MYB46(1)                --------->MYB52(2)<--------P                                       --------->ANAC55(2)              <--------P    --------->ARR14(2)                                     <---------ANAC55(2)           <---------TOE2(3)<---------ARR14(2)        --------->AHL20(2)           <------MYB83      <---------ANAC46     <---------CCA1(2)    ----------->HVH21                 --------->MYB111(1)   <----------DOF2      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------ANAC46   --------->MYB59   cttctctttcgtcgaggttagtagagaacatatctggttgctcagtgggagtgacattaaaaacgtcgtctatgtattgtagattaggtatttcaatgat  19864900                                                 ------>ZmHOX2a(1)                                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                      <---------ANAC46       --------->ARR14(3)                      <---------ANAC58       <---------ARR11(3)                      <---------ANAC58       <---------GLK1(2)           ===================================HOX2a_HOX2a           ------>ZmHOX2a(2)                 <---------ARR14(2)          --------->GLK1(1)                  --------->ARR14(2)          <------ZmHOX2a(2)                  <---------ARR14(3)          ====================================HOX2a_HOX2a          <---------GLK1(1)                  --------->ARR11(3)         --------->GLK1(2)                   --------->AGP1         <---------ARR11(3)            ==============HOX2a_HOX2a         --------->ARR14(2)            <------ZmHOX2a(1)         <---------ARR14(3)            ===============HOX2a_HOX2a                           <--------         <---------ARR14(2)           <------MYB46(1) <---------ARR14(2)                    ---------         --------->ARR11(3)           <------MYB83    --------->ARR14(2)                  <--------P<      <---------TOE2(3)             <--------P ------>ZmHOX2a(2)                     <-----------RAV1(1) -->YAB1<------ZmHOX2a(1)     --------->ATHB12<------ZmHOX2a(2)                      <---------ANAC46 --ATHB12<---------AGP1    --------->YAB1  ----------->ARR10                  ---------->DOF2    <---   acctagttgaggatctctcaaatagcttataatctttggtaggacaagatcctccatattcgtatgcaaatggacattggcaaagttatgtggtagctca  19865000                                                                                                  <--                                                          <---------ANAC58                    <xxxxxx                                                          <---------ANAC58                    <------         --------->At4g35610                              <---------ANAC46            <xxxxxxxxxxxxxx         <---------At4g35610                             <-------TEIL               <---------HSFB2a(2)     --------->ARR14(2)                               <---------At4g35610          --------->ANAC58     <---------ARR14(2)                               <---------ZAT2               <xxxxxxxxxxxxxxxxx     <---------MYB52(1)                               --------->At4g35610          xxxxxxxxxxxxxxxxxx -At4g35610                                         <-----------RAV1(2)       xxxxxxxxxxxxxxxxxxxxxxx >At4g35610                   <---------------AGL15<-------TEIL         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) -----------GT1             <---------ZAT18       --------->CCA1(2)<-------MYC3    --------->ANAC58 -------TaMYB80      <----------DOF2              --------->GLK1(2)------->MYC3   --------->SPL7<----   tattcccgttctgctaaggccatctttttgtgctcttcagagcaataccgagattcaggtgcgtagacacatgtacaagaccagtacgcgaaggccttat  19865100                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxsmallRNA(i)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                   --------->ANAC58                                   --------->ANAC58                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  ------->GAMYB                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <---------ALFIN1                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                          <---------WOX13(1)                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         --------->ARR14(2)                         <---------ARR14(2)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        --------->ATHB12 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       ----------->ARR10xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     <xxxxxxxxxxxxxxxxsmallRNA(i)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <------MYB83                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------MYB52(1)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)      <------------CBF                  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)              <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)         xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <xxxxxxxxxxxxxxxxsmallRNA(i)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ANAC46xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ------->TEIL --------->ZAT6<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <---------HSFB2a(2) --------DOF2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)--------->TOE1(2) --------->MYB59 xxxxxxxxxxxxxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<------MYB46(1) ---CCA1(2) xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <-- xxxxxxsmallRNA(le3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    xxxxx xxxxx>smallRNA(le3)--------->ANAC46<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  ----------->GT1  --------- >smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   --------- -----YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         ---------   ctttatgcacataatgcataacacgaagattggcaacacccattgcagaaacctgctaatacacattgttaggtctagagaaaaaaactctctctcgcaa  19865200     <---------ARR14(2)     --------->ARR11(3)     <---------ARR11(3)     --------->ARR14(3)                                    <---------YAB1     <---------ARR14(3)                                   <---------AHL20(2)     <---------GLK1(2)                                    <---------AHL20(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  <---------AHL20(2) --------DOF2               --------->ETT(2)<---------ANAC55(1)                           <---------TOE2(3) xxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <---------ANAC58                              <---------TOE1(2) >ANAC58          <----------DOF2           <---------ANAC46       <---------DAG2         <---------TOE2(2) >ANAC46        <----------DOF2 <------------CBF  <-----------TBP  <----------DOF2   ------->TEIL  -- >ANAC58 <---------YAB1<------------CBF     <---------ANAC58    <-----------GT1     <---------CCA1(2)   ctttgaagattttgtttgctctttggattgtcgagattgtttcatttcgtgtttttatattattttttacttttagttttggatttgaatcttaggttta  19865300                                       <---------WOX13(1)                                      <------------CBF             <------------CBF        --------->ATHB12       ----------->GT1    --------->ANAC46                           <-----------HVH21           <---       <----------ID1     --------->ANAC58                  --------->AHL20(2)               <-------     ---------->DOF2      <----------ID1                  --------->TOE2(3)           ------->TEIL <- <----------ID1           --------->ANAC58       <---------YAB1  --------->TOE2(2)    <---------TOE2(2) -------->DOF2   <---------YAB1     <---------YAB1      <---------AHL20(2)            <---------TOE1(2)   aaaaagaaaaagaaaaattgtgatcaaaacgacatggtttgattgaagatgatgctaattcattaaacatgggtcatttgagtcgacgtatgttagtatt  19865400                                 ----------->HVH21                                --------->SPL7                              --------->TOE2(2)                              --------->TOE1(2)                             <---------ANAC58                             <---------ANAC58                             <---------ANAC55(1)                             --------->ANAC55(2)                             <---------ANAC55(2)                      ------>ZmHOX2a(1)                     --------->TOE2(3)                    ------>ZmHOX2a(2)                   <------ZmHOX2a(2)                  --------->ARR11(3)                  --------->ARR14(2)                  <---------ARR11(3)                      <---------AHL20(2)                  <---------ARR14(2)                     <---------AHL20(1)                      <---           <------------CBF <-------TEIL                 <---------AHL20(2)               <---------TOE2(3) --------GT1     <---------At4g35610     ---------->DOF2 --------->AHL20(2)      ---------->DOF2 ---- --ZAT6  <---------YAB1     <-----------------------TaNAC69(2)        <---------YAB1      <---------YAB1 --------MYB52(2)<---------GLK1(1)<---------PCF2     <---------AHL20(2)  ------->TEIL    <-----------GT1   aactaacatttgttattgcagatcctaaaatacgtgcgacctataaagtttggatataatttttttttttttatgaatttgggtaaagaattaacattgt  19865500                                                                                 <------MYB46(1)                                                                <-----------HVH21<------MYB83                                                    --------->ARR11(3)          <---------AtMYB61                                                    <---------ARR11(3)          --------->MYB59                                                   --------->CCA1(1)          <---------MYB52(1)                                                   --------->RVE1(1)        <---------ANAC58                                               <---------AHL20(2)           <---------ANAC46        <                                               --------->AHL20(2)    --------->MYB46(3)         <---- ------ZAT14                                  --------->YAB1   --------->ANAC46 <---------MYB46(3)  - ----->ZAT14                             ----------->GT1   <-----------GT1  <---------ANAC58    -----   acagtatgttttatataagaaaacaatactttgcaaattgtactggtataaaaatatcgtttttccagtcacccgcttacgtttggtccaagttgttttt  19865600  Previous    Next  AGI:  At1g53260.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15000.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39382.1) Range:  from: 19862935    to: 19864644    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g53265.1    Description:  unknown protein Range:  from: 19864766    to: 19865143    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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