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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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             --------->ALFIN1
            ------->MYC3
            ------->PIF5
            <-------MYC3
            <-------MYC2
            ------->MYC2
            <-------PIF5
           --------->TGA1a
           =================================================bZIP_DOF
           --------->ANAC55(2)
           ===================bZIP_DOF
           <---------ANAC46
           <---------ANAC55(2)
           ==================================bZIP_DOF
           <---------O2
           <---------TGA1a
           --------->O2
           <---------bZIP60(2)
       <----------------PIF3(2)
       <-----------HVH21
      <---------DEAR3(2)
     --------->DEAR3(1)                                                   ----------->HVH21
    <------NtERF2                                                  ------>MYB83
    --------->ATERF1(1)                                            ------>MYB46(1)
   ------>NtERF2                                                 <---------MYB59
  --------->ANAC46                                            <---------WRKY18(1)
<---------TGA1a                                              <---------ETT(2)
--------->TGA1a                                              --------->WRKY38(1)
--------->ANAC58        --------------->AtSPL8               --------->ETT(2)
--------->ANAC46   <----------DOF2                           --------->WRKY12                 <-----
--------->ANAC58   ------>ZmHOX2a(1)                      ------>ZmHOX2a(1)           ------->TEIL
-->ARR10----------->HVH21         <----------DOF2<----------DOF2-------->ZAP1     --------------->AtSPL8
 
ctcacgcgccggtcacgtggtcctttcgctgtacatactttactatgtctgtcttttcttcctgttgaccgaacaatgtgacctccttgtacctccacaa  19855000
                                                               <---------ANAC46
                                                              <------NtERF2
                                                              --------->ATERF1(1)
                                                             ------>NtERF2
                                                            --------->DEAR3(1)
                                                            <---------DEAR3(1)
                                                            ----------->HVH21
           <---------ALFIN1                                --------->ATERF1(1)
           --------->AtMYB61                               <------NtERF2
          <---------MYB55(2)                               --------->RAP2.3(1)
          --------->MYB46(3)                              <---------ATERF1(1)
        ------->GAMYB                                     ------>NtERF2
        --------->AtMYB61                                 <---------ERF1
       --------->MYB46(3)                                 <---------DEAR4(2)
       <---------MYB55(2)                                 <---------RAP2.3(1)
      -------->P                                          <---------ORA47(2)
      --------->ANAC58             <---------MYB46(3)    <---------RAP2.6(2)
      --------->ANAC58          <------MYB83             <---------DEAR3(1)
   <------NtERF2                <------MYB46(1)          --------->ATERF1(2)
   ------>NtERF2<---------MYB52(1)<---------AtMYB61      <---------RAP2.3(3)
   --------->LBD16             <---------MYB46(3)        <---------RAP2.3(2)                   <----
  --------->RAP2.3(2)          <---------AtMYB61         <---------ANAC46                     ------
  --------->RRTF1(2)        --------->ATHB12            --------->ATERF1(1)          --------->DOF5.7(2)
  --------->ANAC46       <---------At4g35610            <---------ABI4(1)            <---------MYB52(1)
  --------->DEAR3(1)    <---------DEAR3(1)      <---------HSFC1(1)                  <-------GAMYB
  --------->RAP2.6(2) <-----------HVH21         --------->HSFB2a(2)  <-----------ARR10     ---------
 --------->RAP2.3(1) --------->ANAC46       <---------CCA1(2)<---------ATERF1(1)   <---------MYB46(3)
----GLK1(2)--------->DEAR3(1) <---------WOX13(1)<---------HSFB2a(2)  --------->GLK1(2)    <---------
 
tctcgccgcaaccaccaccgttctccgtcgctgattggtggtgtctcatctctagaagaggcggcgacggagaatctaagaaatggtcgttatctggtgc  19855100
                                                                      <---------RRTF1(1)
                                                                      ------>NtERF2
                                                                      <---------ERF1
                                                                      <---------RAP2.3(1)
                                                                     <---------O2
                                                                     <---------RAP2.3(2)
                                                                     <---------DEAR3(1)
                                                                     --------->O2
                                                                    <------NtERF2
                                                                   ------>NtERF2
                                                                   <---------ATERF1(1)
                                                                  --------->DEAR3(1)
                                                                  <---------DEAR3(1)
                                                                 --------->RAP2.3(1)
                                                                 --------->ATERF1(1)
                                                                 <------NtERF2
                                                                <---------ATERF1(1)
                                                                <---------RRTF1(1)
                                                                <---------RAP2.6(1)
                                                                <---------DEAR4(2)
                                                                ------>NtERF2
                                                                <---------ERF1
                                                                <---------ORA47(2)
                                                                <---------RAP2.3(1)
                                                               <---------RAP2.3(3)
                                                               <---------RAP2.3(2)
                                                               --------->ATERF1(2)
                                                               <---------ATERF1(2)
                                                               --------->DEAR3(1)
                                                              <------NtERF2
                                                              <---------ABI4(1)
                                                              --------->At4g35610
                                                              --------->ATERF1(1)
                                                              --------->DREB2C(1)
                                                              <---------At4g35610
                                                             <---------DEAR4(2)
                                                             <---------RAP2.3(1)
                                                             <---------RRTF1(1)
                                                             <---------ORA47(2)
                                                             <---------ERF1
                                                             ------>NtERF2<-------GAMYB
                                                             <---------RAP2.6(1)
                                                             <---------ATERF1(1)
                                                            <---------DREB2C(2)
                                                            <---------RRTF1(2)
                                                            <---------RAP2.3(2)
                                                            <---------RRTF1(3)
                                                            <---------RAP2.3(3)
                                                            <---------RAP2.6(2)
                                                            <---------DEAR3(1)
                                                           <---------ABI4(1)
                                                           --------->ATERF1(1)
                                                          <---------ATERF1(1)
                                                          ------>NtERF2  <---------DEAR3(2)
                                                          <---------ERF1 <---------MYB46(3)
                                                         <---------RRTF1(2)
                                                         <---------RAP2.3(3)
                                                         <---------RRTF1(3)
                                                         <---------DREB2C(2)
                                                <------MYB83--------->DEAR3(1)
                                                <------MYB46(1)<---------ANAC46        --------->LBD16
                                             <-------GAMYB<---------RRTF1(1)       --------->DEAR3(1)
                                            --------->MYB55(2)--------->RAP2.3(1) --------->DEAR3(2)
                                            --------->MYB111(2)<---------DEAR3(1) --------->MYB46(3)
                                            <---------MYB46(3)--------->DEAR4(2)  <------------AtMYB77
                                         <---------MYB46(3)<------NtERF2<---------DEAR3(1) ---------
                                        <---------AtMYB61<---------RAP2.3(2)     <---------At5g28300
                                        <---------DEAR3(1)<---------RAP2.3(1) <---------MYB52(1)
                                        --------->ALFIN1 <---------DEAR3(1)   --------->DOF5.7(2)
  <---------REM1(1)                   <---------MYB46(3) <---------RAP2.6(2) <-------GAMYB<------ZmHOX2a(1)
--------->YAB1                       --------->ALFIN1 <---------YAB1--------->ATERF1(1)------>NtERF2
--NtERF2                             <---------AtMYB61----------->HVH21<------NtERF2  --------->DEAR3(1)
>NtERF2--------->YAB1             <---------AtMYB61 <---------ICU4----------->HVH21------->GAMYB
>At4g35610                   <-------GAMYB <---------AtMYB61<---------ATERF1(2) <---------DOF5.7(2)
--RAV1(1)                   <---------MYB46(3)<--------P--------->RAP2.6(3) <---------MYB46(3)  ----
 
cattgatgaagcatattgtggaaattcaaggtcgttgatggtggtggtggttggattatgacggcggcggcgacggcggtcgttaaccgccgaggaatcc  19855200
              <---------AHL20(2)                          --------->ANAC46
              --------->AHL20(2)                          --------->ANAC58                         -
          --------->AHL20(2)                              --------->ANAC58                         -
          <---------AHL20(2)                      --------->TOE2(3)   ---------->DOF2              -
    <---------TOE1(2)                             --------->TOE1(3) <---------ATHB12        >>>>>>>>
  <---------SPL7                         --------->ARR14(2)   ------>NtERF2              >>>>>>>>>TBF1
 <---------MYB46(3)                      <---------ARR14(2)   ----------->RAV1(1)     >>>>>>>>>TBF1<
>GLK1(1) --------->AHL20(2)<-----------GT1     <---------ALFIN1 --------->MYB46(3) >>>>>>>>>TBF1   -
----->LBD16  --------->AHL20(2)     ------>ZmHOX2a(1)     --------->ANAC55(1)   >>>>>>>>>TBF1      -
 
agagtcgttcgatttatttaattcaacattttgcctctcctccaaatcccaaaccctaaacacgccaacaaatcaaagatgaagaagaagaagaagaaga  19855300
-------->ANAC58
-------->ANAC55(1)
-------->ANAC55(2)
>TBF1
---------ANAC55(2)
-------->ANAC58                                        <---------GLK1(2)     ---------->ID1
-------->ANAC46      -------->P            <----------DOF2     <----------DOF2              *TSS
 
agacgtaattgaattttgcagactaacccatgactaaatttctcttcttttgtctaaagattgtttcttttttagaatttgtctctgtttctgagaattc  19855400
                                                                               <----------DOF2
                                                                            <---------ARR11(3)
                                                                            --------->ARR11(3)
                                                                        ---------->DOF2
               --------->ANAC58                                        <------ZmHOX2a(1)        <---
               --------->ANAC58                                      --------->LBD16            <---
             <------ZmHOX2a(1)                                   <---------ARR14(2)    <---------AHL20(2)
--------->ANAC58                                                 --------->ARR14(2)    --------->AHL20(2)
--------->ANAC58     <XXXXXXXXXXXXXXXXXXXXXMIR831                --------->GLK1(2) <---------AHL20(2)
------------------------>ANAC81                   <------------CBF  <---------LBD16--------->AHL20(2)
 
aagaagcaaaaacagaggaagcaagaagagagagaagagatagagagatgtggaattgactaaacgagaatccaggaaagctctttttaattttttgttt  19855500
           <-----------------AGL1
           <---------At5g28300
           <-----------------AG
          <-----------GT1
   <------NtERF2
  <------NtERF2                      --------->GLK1(2)
  ----------->GT1                   <---------ARR11(3)
  --------->LBD16  ------->GAMYB    --------->ARR11(3)                                <------MYB83
 --------->RAP2.6(2)--------->At5g28300         <---------LBD16                       <------MYB46(1)
<---------LBD16    ----------->GT1  <---------GLK1(2)                                --------->MYB59
------ANAC58    --------->MYB52(1) <---------RVE1(1)                        <------ZmHOX2a(1) ------
------ANAC58--------->ZAT6---------->DOF2    --------->ALFIN1    --------->YAB1--------->ALFIN1
 
ctggccggaaaatttacagtaacggtaaaaaaaggaagagattttggggtttggggaagagagggaaatggtaatggaaggagtgtgtttggtcataaaa  19855600
                                                                              <---------TOE1(3)
                                                                              <---------TOE2(3)
                                                                           <---------AHL20(2)
                  --------->YAB1                                       <---------AHL20(2)
                  <---------ICU4                                      --------->AHL20(1)
                 <---------YAB1                                       <---------AHL20(1)
               <---------ICU4                                       <---------AHL20(2)
               --------->YAB1        <---------AHL20(2)            --------->AHL20(2)
---->DOF2   --------->YAB1    <----------DOF2---------->DOF2 <---------AHL20(2)
 
agagctctctgatactcatcatcatcacttgtgcttttatttcatttttaaagtgttttcttattttatattatatattttatggtttttctaaatgaaa  19855700
                                        ----------->HVH21
                                      <---------AtLEC2
                                      --------->ANAC55(2)
                                <---------AHL20(1)                               --------->ARR11(3)
           ---------->ID1 ----------->GT1                                <---------YAB1         <---
      <----------DOF2<---------ICU4 <-----------GT1                    <<<<<<<<<<<<<<<<<LFY  <------
  --------->DAG2  --------->YAB1--------->AHL20(1)                 <-------TEIL  <---------AHL20(1)
 ---------->DOF2 <-------TEIL   --------->AHL20(2)                <-----------GT1<---------ARR11(3)
 
aacaaaaagcttttgtccgattcatcatgtggaaatattttacatgacatttcgaattgtattagctatatacattacaatggatatattttggtagagg  19855800
                                        <------MYB46(1)
                                        <------MYB83
                                       --------->MYB59
                                       <---------AtMYB61
                                  <---------TOE1(2)                       <---------YAB1      ------
                                  <---------TOE2(3)                     --------->YAB1  --------->ANAC58
<---------ZAT6                ------>ZmHOX2a(1)                       <---------TOE2(3) --------->ANAC58
------ARR14(2)              <---------ZAT18                <---------AHL20(2)          --------->YAB1
---TOE2(3)           <-------TEIL <---------TOE2(2) --------->ZAT6   ---------->DOF2  ---------->DOF2
 
ttactgtaagaatatcaacacatatacatagtcctcttaggtttggttctgactaccactatttttttttgttaaagatgatagaaactataagcactaa  19855900
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AGI:  At1g53230.1   
Description:  TCP3 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 3); transcription factor. similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.2); similar to TCP4 (TCP FAMILY TRANSCRIPTION FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39371.1); contains InterPro domain Transcription factor, TCP (InterPro:IPR005333)
Range:  from: 19853456    to: 19855393    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g53233.1   
Description:  other RNA
Range:  from: 19853699    to: 19855795    Orientation: Forward
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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