Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         --------->REM1(2)                                           ------->TEIL      --------->AHL20(2)    --------->TOE2(3)            <---------ANAC58             <---------AtLEC2   ----------->GT1    -  <---------YAB1                 <---------ANAC58         <----------DOF2    ---------->DOF2      --- -------KAN4(2)             ------->TEIL               --------->ANAC58--------->At4g35610        <-- ------>GT1       ------>ZmHOX2a(1)                    --------->ANAC58<---------At4g35610        ---   gataatccttgaagacaatccttcttaatgaacttacttggttccacttaaaaaaacaagctttacatgaatcagctactaaagagataaattttggaac  19764700                --------->MYB46(3)                <---------MYB52(2)              --------->MYB52(1)           --------->ANAC46           --------->YAB1         ------>MYB46(1)                                                           <---------ANAC55(2)         ------>MYB83         <---------ARR11(3)                                   ----------->GT1       <---------MYB59 --------->ARR14(2)                                         --------->MYB59       <---------MYB46(2)    <---------CCA1(2) --------->YAB1                   <---------ATHB12    <-----------GT1    <---------ARR14(2)    <---------WOX13(1)            --------->ANAC58 -------->AHL20(2)     <---------GLK1(2)   --------->ATHB12                --------->ANAC46 ------>ANAC55(2) --------->MYB52(1)     <---------WOX13(1)  --------->ATHB12 --------->WOX13(1)----- -------ANAC55(2)------->GAMYB--------->ARR11(3)      <-------TEIL         --------->ANAC58--------->TOE1(3) ------>ANAC55(1)<---------SPL7  <----------DOF2  --------->AHL20(2)   <-----------GT1     --------->TOE2(3)   acttaattaccaaacacaacgaacggattctaaatcttttttgagtgattgataaattcatgttgatttgttttcaccagcaatcaggtaaaaccctaaa  19764800               ------->TEIL               --------->SPL7                                    <---------ATHB12              <---------ALFIN1                        ------->GAMYB              --------->ARR14(2)        ------>ZmHOX2a(1)      --------->WOX13(1)   --------->TOE2(3)                   --------->TOE2(3)     <---------YAB1   --------->TOE1(3)             <---------YAB1      --------->MYB46(3)                    --------->ZAT6 ---->YAB1  --------->LBD16  <---------GLK1(2)     <-----------GT1--------->AHL20(2)     <-----------GT1   ataaactttaaaccccgaaccccaaatcacaaattctcattccttagtgaaattaaccatctcatcaatgaaatattagaagcttattttgtaacactct  19764900                   --------->ANAC58                   --------->ANAC58                  --------->WOX13(1)                <---------ATHB12 <---------ICU4                                --------->YAB1<-------          --------->TOE1(3)      --------->YAB1           <---------YAB1      <<<<<<<<<ARR1  --------          --------->TOE2(3) <---------GLK1(2)        <---------AHL20(2)       <---------ATHB12        ------->TEIL   --------->MYB52(1)       <------ZmHOX2a(1) <-------TEIL<<<<<<<<<ARR2  <-------  ------>ZmHOX2a(1)--------->AtLEC2          <---------LBD16  --------->AHL20(2)  <---------TOE1(2)   aatcctattgaacctcaaatcaagcaaacagataatcaacacaaaattcaggaattttttttgataaattcattcgcacaatcatatgttcttccgatag  19765000     --------->DAG2                                                                                 <    --------->MYB52(1)                            <----------DOF2   --------->ANAC58               --   --------->CCA1(2)              ----------->HVH21        <------ZmHOX2a(1)             --------->ARR11(3) --ARR14(2)             <----------ID1        ====================HOX2a_HOX2a            --------->GLK1(2) ->ARR14(2)            <---------TOE2(3)      ------>ZmHOX2a(2)     --------->ANAC58    <---------GLK1(2) --MYB52(1)           --------->MYB52(1)<----------DOF2  <---------TOE2(3)         <---------ATHB12--   gcgagataagggaacttaagagattaacgaaaaaaactgaccctttgatcggcttgaatgaggaagagtcaagaaacgtagaacaatgaagaatcttggg  19765100          ---------->DOF2      ---------->DOF2   --------->ANAC58                   ------------>CBF     <---------At4g35610   --------->ANAC58              --------->ZAT18           <-------GAMYB ---------ZAT2                 --------->At4g35610<---------AHL20(2) <----------DOF2 ------->ANAC58             ---------->DOF2<---------AHL20(2) --------->ATHB12 ------->ANAC58     *TSS----------->GT1   <-----------TBP <---------MYB46(3)                  <------   cgagcaaggaaagaaagaactgagaaatgtaaaagctcacaacaatttatagttaatgggctgttgatgggcttttcaggcccatttactcattttaagt  19765200                                                                               ==================HOX2a_HOX2a                                                                               <------ZmHOX2a(2)                                                                              <-----------ARR10                                                                              --------->ARR11(3)                                                                              <---------ARR11(3)                                                                              --------->ARR14(2)                                                                              <---------ARR14(2)                                                                      ------>MYB46(1)                                                                      ------>MYB83                                                                    --------------->AGL15                                                                    <---------MYB59   --------->TOE1(2)                                                                    <---------------AGL15                                                                   ----------------->AG                                                                   ----------------->AGL1                                                                   <-----------------AGL2     <------------CBF                                              ----------------->AGL2  <---------------AGL15                                            <-----------------AGL3  --------------->AGL15            <---------GLK1(2)               ----------------->AGL3 <------ZmHOX2a(1)  ==================================================================================MADS_MADS  ------------>CBF          --------->GLK1(2)                    <-----------GT1=================HOX2a_HOX2a  ===================================================================================MADS_MADS <-----------GT1           <---------GLK1(2)                   <---------GLK1(1)------>ZmHOX2a(2) ---TOE2(3)            ---------->DOF2    <----------DOF2<---------AtLEC2    <------ZmHOX2a(1)   ttttcacaattgagtaacccaaatgaaaagaatctctgattcttcttttacaaagagttgaatggatttaccaaatataggatctacacataggacaatc  19765300                                                                                                -----                                                             --------->YAB1            <---------MYB46(3)                           --------->AHL20(2)               <-------TEIL           <---------YAB1                 --------->DAG2                   ------>ZmHOX2a(2)            --------->ARR11(3)                ---------->DOF2                 --------->ARR11(3)           <---------YAB1   <------    ---------->DOF2       <---------MYB52(1)    <---------ARR11(3)------->TEIL--------->YAB1  -------   gaagaacaaagacatcaataaagttgccattaatttcagacaaaacacttgatcttctgatattcatgaatcccaaactatgattttgtttgttctgatc  19765400                                                               <---------YAB1                                                             --------->YAB1                                       --------->ARR14(2)   <---------YAB1                            ------>ZmHOX2a(1)              <---------ARR11(3)         ---------->DOF2   --------------->AGL15<------ZmHOX2a(2)                        <---------ZAT18     ------->TEIL      --------->GLK1(1)       --------->ARR11(3)                        --------->ZAT18 ->ZmHOX2a(2)      <-----------GT1     <---------ARR14(2)  --------->ARR11(3)      <---------ANAC58 ---ARR11(3)  <----------DOF2 <----------DOF2  <---------ARR11(3)                  <---------ANAC58 -->ARR11(3)  <---------DAG2===========================HOX2a_HOX2a       ----------->RAV1(2)   ttgtctgaatctaaagctttttcacatttcctcttttatcaaatctgaagatcaaaaacaatatcataatacatcatctggttttgcttagcccacaagt  19765500                                                                           --------->ANAC58                                                                           --------->ANAC46                                                               ---------->DOF2         --------->ANAC58               ----------->GT1     --------->YAB1            --------->ANAC58          --------->ANAC58             ----------->GT1      <---------ATHB12           --------->ANAC58        ---------->DOF2           ---------->DOF2      --------->WOX13(1)    <---------KAN4(2)    --------->ANAC58      ---------->DOF2        --------->TOE2(3)       --------->YAB1     --------->TOE1(2)   tttttttttaaagaaaagagaaaatcaaaaacatcaatcatacttctctctccaagaataaacaagaaagaaaacccaagaaatagccaaagcaatgtct  19765600  Previous    Next  AGI:  At1g53030.1    Description:  cytochrome c oxidase copper chaperone family protein. similar to ATCOX17 (Arabidopsis thaliana cytochrome c oxidase 17) [Arabidopsis thaliana] (TAIR:AT3G15352.1); similar to unknown [Picea sitchensis] (GB:ABK23831.1); similar to Os02g0794600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048378.1); contains InterPro domain Cytochrome C oxidase copper chaperone; (InterPro:IPR007745) Range:  from: 19763669    to: 19765120    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g53035.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15358.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69750.1) Range:  from: 19765368    to: 19766219    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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