Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                            --------->ARR11(3)                                                    <---------MYB52(1)                   <---------CCA1(2)                    <---------At4g35610            <-----------HVH21                <---------MYB52(1)               --------->ANAC58                    <-----------TGA1               <---------ANAC58     --------->bZIP60(1)                          --------->ANAC55(2)     <---------MYB52(1)    <----     --------->TGA2(1)                            --------->ANAC46       --------->At4g35610  -------     <---------TGA2(1)                    <---------TOE1(2)              <-------GAMYB   <---------GLK1(1)     <---------bZIP60(1)                 -------------->OsCBT           <---------MYB46(3)<---------ARR11(3)  ----------->HVH21 <---------ZAT2     <---------ANAC46     --------->ANAC46      <---------ANAC58 -------->At4g35610 --------->At4g35610<---------ANAC58     --------->ANAC58      <---------ANAC46 --->ZmHOX2a(2)--------->ANAC58        <---------ANAC58     --------->ANAC58  <---------GLK1(1) -----   tcggatgacatcatcgaacgtaagctgaactctcttcaccttcgtgtgttttccgtcatcccaagacatcgtggccgttgaattccgtttgatatcttct  19339400     <---------YAB1   <---------ICU4   -------->ATHB1                                                                    <---------MYB46(3)   --------->ATHB51                                                                  ----------->GT1  <---------YAB1                                                                 --------->ATHB12  --------->AHL20(1)                                                       ------>ZmHOX2a(1)  --------->AHL20(2)                                       --------->TOE2(3)    <---------YAB1  --------->ICU4                                          <---------ANAC55(2)   <---------AHL20(2)  <---------AHL20(2)                                      ----------->GT1  <----------DOF2       ---- -----HSFB2a(2)                                    <-----------GT1      ---------->ID1        <------ -->At4g35610     --------->AtLEC2                <---------YAB1       <-----------GT1    <---------YAB1 ---->HSFB2a(2)<-------TEIL                     --------->YAB1     <----------DOF2 <---------WOX13(1)   gaaaattattacacaaattcatccaaattagaagtttatacacttgaaaattataacaaaacgtaaattcttttatccttttttaattggttactaatga  19339500                                                          --------->AHL20(2)                                                       --------->YAB1                                                      <---------AHL20(2)                                             ----------->GT1                       --------->ZAT18                                         ---------->DOF2  --------->YAB1      <---------ANAC55(1)                                    --------->YAB1    --------->AHL20(2)      <---------ANAC46                             <------ZmHOX2a(2)     <---------ICU4             <---------YAB1 --->TEIL        <------ZmHOX2a(1)<---------ARR11(3)--------->TOE2(3)  <---------ANAC58      -------- ---ATHB12       ===================HOX2a_HOX2a   --------->ICU4       <---------ANAC58 <---------At4g35610   acataaaaacgtctctctaggaatgtaatggatcaaaatcataaaaagagtaaacattaattatacagttatagcttattatgtgtgtgcaactgatatc  19339600                                                                                               ------                                             <---------ANAC55(2)                 <---------LBD16                                             --------->ANAC55(2)    <---------GLK1(1)          <-----                                  ---------->DOF2                   --------->GLK1(1)       ---------                              <---------ANAC58          <----------DOF2      --------->GLK1(2) ------     ----------->RAV1(1) <---------ICU4    <-----------GT1         ---------->TaMYB80  ----------->GT1 ->GLK1(1)    --------->ATHB12<---------ANAC58          --------->TOE2(3)   <---------GLK1(2)  <-----   aacatagccacagaattgatttgttcataaatgcttgaaagtttattacatacttaaactttagtaggggatatcacagaatttggggatggataaaaat  19339700                                                                                             <------MYB46(1)                                                                                             <------MYB83                                                                                            ---------                                                                                            <--------                                                     <---------ANAC46                  <---------TOE2(3)                                                  --------->ALFIN1                -------->ATHB1                                                <---------ANAC46                  --------->YAB1                                            ----------->RAV1(2)                   <---------ICU4                                           --------->MYB52(1)                     <--------ATHB1                                           ------->TEIL<------ZmHOX2a(1)          --------->ATHB12                                        --------->ANAC58                          <------------ATHB5                                        <---------ANAC58                          --------->ATHB51                                        <---------ANAC58                         --------->ICU4 --->AHL20(1)                           --------->ANAC58             ----------->GT1   <---------ANAC46 ----ARR11(3)                           <---------ANAC55(2)       <------ZmHOX2a(1) *TSS   --------->ALFIN1 >AHL20(2)                              --------->ANAC55(2) <---------WOX13(1)   <---------YAB1 --->ARR11(3)                      <---------------AtSPL3 --------->ATHB12       <---------ATHB12 ----AHL20(1)                      <---------------AtSPL8<---------YAB1          <---------ATHB51   attcaagaaaaatcgaaattagatagagaagagagagcgagtacgtacctgagtggaggatgattggaggagagtaaattgcaataattgagggtgggta  19339800                                  --------->MYB52(2)                                  --------->MYB111(1)                                  --------->MYB59                                  --------->MYB46(2)                       --------->HSFB2a(2)                      <---------LBD16                     <---------LBD16                --------------->AGL15                <---------------AGL15               ----------------->AG               <-----------------AGL1               ----------------->AGL1               <-----------------AG     <---------ZAT6  ------------>CBF               <-----------------AGL2 <---------At5g28300             <-----------GT1    <--------P          <---------TGA1a           <------------CBF     ==============================MYC_MYB                            <---          --------->ATHB12    ----------->GT1       <---------bZIP60(2)                       -------         <---------YAB1<---------HSFB2a(2)          --------->O2                              <------   ----------------->AGL3    --------->DAG2         <---------O2<-----------GT1               -------   ==============================MADS_MADS<---------MYB52(1) --------->YAB1           --------->AHL20(2) >MYB55(2)<---------ICU4     <---------TOE1(3)      --------->TGA1a       <---------MYB46(3)  <------ -MYB46(3)<---------AHL20(2) <---------TOE2(3)  <-----------HVH21<-----------GT1    --------->AHL20(2)   atggttccatatttattgccattttcgggataaggttagttactgttatttgtcacatggcaatattaaacatttttggttacaaaaaaaatatagaata  19339900                                                                                                 xxxx                                                                                                <xxxx                                                                                                <----                                                                                               ------                                                                                               ------                                                                                               <xxxxx                                                                                               ------                                                                                               <xxxxx                                                                                               ------                                                                                               <xxxxx                                                                                               <xxxxx                                                                                               <xxxxx                                                                                              <xxxxxx                                                                                              <xxxxxx                                                                                              <------                                                                                              <xxxxxx                                                                                              xxxxxxx                                                                                             <xxxxxxx                                                                                            <xxxxxxxx                                                                                            <xxxxxxxx                                                                                            xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                           <xxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <-----------HVH21                                                                                   <xxxxxxxxxxxxxxxxx                                                                                 <xxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        --------->ANAC46                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ----------->RAV1(1)                                              --------->At5g28300<xxxxxxxx       --------->MYB46(3)                                               ----------->GT1   <xxxxxxxxxx ------YAB1                                                            ----------->GT1  <---------ALFIN1 --->TaMYB80                                                        ---------->DOF2<------MYB83<xxxxx ---KAN4(2)                                                    ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -->ARR14(2)                                          ---------->DOF2--------->DAG2<------MYB46(1) ---ARR14(2)                           --------->TOE2(3)    ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   tgcttctcacccacaaaaaaaaaaaacgttttgccaaaatttcttaaatggatgacaaaagaaggttgaaaaaagggtaaattgtaggtcacacccgttg  19340000                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <---------ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------AHL20(2) xxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxsmallRNA(si3) -----WRKY18(1)  <---------ANAC58 --->WRKY45<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --->WRKY12xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxsmallRNA(fl3) --->WRKY38(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxsmallRNA(si3) ----->HVH21   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxsmallRNA(i) xxxxxxxxxxsmallRNA(s) ---MYB52(1)<---------AtLEC2 xxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxsmallRNA(s) xxxxxxxxxxxxsmallRNA(le3)                   --------------------->WRI1 xxxxxxxxsmallRNA(s)                        --------->ATHB12 xxxxxxxxxx>smallRNA(fl3)                   <---------ICU4             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxsmallRNA(si3)               <---------YAB1             <---------bZIP60(2) xxxxxxxxxxxxxxsmallRNA(le3)             --------->YAB1               <---------ANAC58 xxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------ANAC58 xxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxsmallRNA(s)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxsmallRNA(si3)  ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxsmallRNA(i)---------->ID1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(i) xxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------ANAC58 --------->ARR14(2) xsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<----------DOF2----------->TGA1 <---------ANAC58 xxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxsmallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <---------ANAC58 <---------ARR14(2) xxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <---------ANAC58   accatgttttatttccatggattgtcaaagtcaaatgtggttttcatcatttgtcttttcgtctgcaaaatgacgtttctgcccttgcgcttctctctta  19340100                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 xxxx                                                                                                 <---                                                                                               xxxxxx                                                                                              -------                                                                                              <------                                                                                           <xxxxxxxxx                                                                                           xxxxxxxxxx                                                                                         --------->GLK1(2)                                                                                        xxxxxxxxxxxxx                                                                                        <xxxxxxxxxxxx                                          --------->ZAT14                               <---------ARR14(2)                                          xxxxxxxxxxxxxxxx>smallRNA(i)                  --------->ARR14(2)                                          <-------TEIL                                 xxxxxxxxxxxxxx                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxx                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                  xxxxxxxxxxxxxxxx                                       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <xxxxxxxxxxxxxxx                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                  xxxxxxxxxxxxxxxx                                       <---------ANAC55(2)                           <xxxxxxxxxxxxxxx                                       <---------ANAC46                             xxxxxxxxxxxxxxxx>smallRNA(i)                                       <---------ANAC58                          --------->WRKY38(1)                                       <---------ANAC58                          --------->WRKY12<---                                       --------->ANAC55(2)                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       <---------ANAC55(1)                       xxxxxxxxxxxxxxxx>smallRNA(i)                                      --------->MYB59                            ----------->HVH21<--                                      --------------->AtSPL3                    --------->DOF5.7(2)<-                                      --------------->AtSPL8      <---------CCA1(1) --------->ANAC46                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      xxxxxxxxxxxxxxxxxxxxx                                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <xxxxxxxxxxxxxxxxxxxx                                    xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)    xxxxxxxxxxxxxxxxxxxxxx                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxx>smallRNA(i)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          xxxxxxxxxxxxxxxx>smallRNA(s)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         xxxxxxxxxxxxxxxxxxxxxxx                             <------MYB83 --------->ZAT18         <---------RVE1(1)<xxxxxxxxxxxxxxxxx                             <------MYB46(1)           <-------TEIL           xxxxxxxxxxxxxxxxxxxxxxx                            <---------TOE1(2)     <---------LBD16--------->ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(s)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)         <---------GLK1(2)<---------DOF5.7(2)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(i)              xxxxxxxxxxxxxxxx>smallRNA(i)<---------ZAT14    ---------->DOF2 xxxxxxxxxxxxxxxx>smallRNA(i)             ------->TEIL   <---------TOE2(2)   xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------------AtSPL8 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxxxxxxxx>smallRNA(s)         <---------------AtSPL3<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        xxxxxxxxxxxxxxxx>smallRNA(i) --------->ICU4<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->LBD16  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   gtaattgttgaaatgtacggtttagtttagtaggtttagttacgtacactgttccggttcagttaaagattttttgtttcacgttgacgcgattcggttc  19340200                                                    <------NtERF2          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>NtERF2 ------ANAC58                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ------->GT1                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----->ANAC55(2)                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(i)         --------->bZIP60(1)    --------->DAG2 ------ANAC58                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxx>smallRNA(i)           <---------bZIP60(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) -->ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ---ARR14(2)                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxsmallRNA(si3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxx>smallRNA(i)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxx>smallRNA(i)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxsmallRNA(s)               ----------->HVH21 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <-- xxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                               <-- x>smallRNA(s)                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                               --- >smallRNA(s)                <---------O2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)              ---- xxxxxxxxsmallRNA(si3)       --------->O2    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <--- xxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                               ------ xxxxxxxxsmallRNA(le3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                            <------- ------ANAC55(2)           --------->LBD16   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)           <xxxxxxxx -----GAMYB               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                     <---------AHL20(2) --------MYB52(1)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                        <---------ICU4--- xx>smallRNA(fl3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     --------->AHL20(2) xxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                    <xxxxxxxxxxxxxxxxxx x>smallRNA(se3)     <---------ICU4<xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            xxxxxxxxxxxxxxxxxxx >smallRNA(se3)      --------->ATHB51       <---------AHL20(2)                  --------->ICU4 <----- xxxxxxsmallRNA(si3)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)---------->DOF2         <xxxxxxxxxxxxxxxxxxxx >smallRNA(le3)     <---------MYB52(1)     --------->AHL20(2)          <---------YAB1  --------->AtLEC2   cgttacaagtgagattatttccattattccgaagtgacatcaacatttaatgcccccaaaaagtttagatgtgactattgtcacaattaatgcaaaatca  19340300  Previous    Next  AGI:  At1g52000.1    Description:  jacalin lectin family protein. similar to MBP1 (MYROSINASE-BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52040.1); similar to myrosinase binding protein [Brassica napus] (GB:CAA70587.1); contains InterPro domain Mannose-binding lectin (InterPro:IPR001229); contains InterPro domain Protein of unknown function GLTT (InterPro:IPR008165) Range:  from: 19336828    to: 19339784    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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