Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ----------->HVH21                                                                       --------->CCA1(2)                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                         <---------ARR11(1)                                                         ------->TEIL --------->ARR14(2)                                                         --------->ARR14(2)                                                         <---------ARR14(2)                         >                                                     <------ZmHOX2a(2)<---------ARR14(2)            >                                            --------->MYB46(3)       <---------HSFB2a(1)          <--                                            <---------MYB52(2)  --------->HSFB2a(2)             -----                                         --------->TOE1(2)      <---------HSFB2a(2)          <-------           ------->TEIL    XXXXXXXXXXXXXXXXXXXX>MIR832-5P--------->GLK1(2)                <---------TOE2(3)      <---------AtLEC2<-----------GT1 --------->GLK1(2) <---------ARR14(1)           <------ZmHOX2a(1)   atatgtttccatggacgtttgatttcaccatggaatcgagaatcgaacgaacacgatcgaatctgtctggaagatttgaccttgagaggattaagatgat  19317400          ---------->DOF2     ---------->DOF2                                                        ----------->GT1 >>>>>>>>ARR1                                                           <------ZmHOX2a(1) >>>>>>>>ARR2                                                       <---------ANAC46 -------YAB1                                                     --------->ANAC46                <--- ---->CCA1(2)                      ---------->DOF2               <---------DEAR3(1)              ---- --YAB1<---------TOE2(3)     --------->MYB52(1)                 <---------LBD16                 <----   acgattgtaaaggaaagggtcattttgtgagtaagggcaaagagaagggactaatttgaaaaattccacggcgaggagaggtgaatttagggatttgaga  19317500                 --------->ALFIN1               <---------ANAC46               <---------ANAC58               <-------GAMYB                                                                    -----           <-----------HVH21                                                             --------->LBD16         <-------TEIL                                                                  <-----------RAV1(2)      <---------HSFC1(2)                                         --------->ANAC58      ==============      --------->HSFC1(2)                                 <------ZmHOX2a(2)             <---------LBD16 ------ARR14(2)<---------ANAC58                        <---------GLK1(1)               <------NtERF2 ----->GLK1(2)--------->MYB55(2)                 --------->YAB1  --------->ANAC58    --------->ARR14(2) -----GLK1(2) <---------MYB46(3)           ----------->GT1     ---------->DOF2       <---------ARR14(2)   atctctgaagcttcgtcgggtgtgagtgagagtgagagagaagagaggtaatcagagagatcagagaaagcatcggagagattagaggctccggtgatga  19317600                                                        <------NtERF2                                                       ------>NtERF2                                                       --------->LBD16                                                      <---------ANAC46                                                     <------NtERF2                                                     --------->ATERF1(1)                                                     <---------LBD16                                                    <---------ERF1                                                    ------>NtERF2                                                    <---------RAP2.3(1)                       <------ZmHOX2a(2)                         <------NtERF2              <---------DEAR3(2)                       <-------                       <---------RAP2.3(3)         <---------RAP2.3(3)                       --------                     --------->MYB52(1)            <---------DREB2C(2)              <---------ANAC46                    ----------->TGA1               <---------At1g77200              <---------DEAR3(1)             --------->At4g35610               --------->SPL7                      <---------At4g35610          <---------At4g35610  --------->ALFIN1------->TEIL                        <---------LBD16          <------NtERF2<---------DEAR3(1)      <-------TEIL                  --------->HSFC1(2)     <        --------->ANAC58------>NtERF2        <---------SPL7                  <---------HSFC1(2)------        --------->ANAC58<---------RAP2.3(1) --------->ANAC58                 <---------HSFB2a(1)  <--      <---------ANAC58 <---------ANAC46     --------->TGA1a                  --------->HSFB2a(1)<----      <---------ANAC58--------->RAP2.6(3)   --------->ANAC58         <------ZmHOX2a(1)<------NtERF2 < <-----------RAV1(1)----------->HVH21 <--------P <-----------HVH21   ================================ ------>ARR10<---------At4g35610  <---------ANAC46 <---------DEAR3(1)================================HOX2a_HOX2a ============RAV  --------->At4g35610 ================MYC_MYB  <------ZmHOX2a(1) <---------DEAR3(1) -   gatttgtggctcggcagattagatgacggcgaggtagagggtagccacgtacgtcggcgggaagaggattaggaagagaaacttcggcggagagagatcg  19317700                                                          <------MYB46(1)                                                          <------MYB83                                                         ----------->ARR10                         <-                                                         --------->MYB59                          ---                                                         --------->MYB46(2)                      <---                                                         <---------AtMYB61                       <---                                                      <-------GAMYB                             <----                                                      <-----------HVH21                         <----                                                     <---------DEAR3(2)                         <----                                                     --------->MYB55(2)                         -----                                                     <---------MYB46(3)                         <----                                                    <---------DEAR3(1)                          -----                                                    <---------TOE2(2)                          <-----                                                  ------------>AtMYB77                         <-----                                                 --------->O2                                  <-----                                                 <---------TGA1a                               <-----                                                 <---------ANAC46                              <-----                                                 <---------O2                                  ------                                                 <---------ANAC58                              <-----                                                 <---------TGA2(1)                             <-----         --------->ICU4                          --------->TGA2(1)                            <------       <---------At4g35610                       <---------ANAC58                             <------       --------->At4g35610                       --------->bZIP60(1)                          <------ <------NtERF2                                   <---------bZIP60(1)                          <------ --ARR14(2)                                      <---------bZIP60(2)                          <------ ->ARR14(2)                       =========================bZIP_DOF                           <------ ------NtERF2                     <----------DOF2--------->TGA1a                              <------ >ZmHOX2a(2)                <------NtERF2        =============MYC_MYB                         <------ -------LBD16              ------>NtERF2        ----------->STF1  <---------MYB46(3)     --------->MYB52(1) -----SPL7                 ----------->RAV1(1) <---------TGA2(2) <---------YAB1         --------->ARR14(2) ---------SPL7            --------->ETT(2)    ----------->TGA1 <---------At4g35610      <---------ARR14(2) =HOX2a_HOX2a        ======================================bZIP_DOF         <---------LBD16   ------- -------->LBD16      <----------DOF2<-----------RAV1(1)<---------MYB52(1) ----------->HVH21  <-------   gccggagggagatgatgaagtgactttggcgacatactttgtggcatagtgacgtcggttaggtctggtgattgtattgacggagttgaagaaacggcgg  19317800       <-------TEIL    --------->HSFC1(2)    <---------HSFC1(2) -----NtERF2 ------>LBD16 ------DEAR3(1) ------ANAC46 -----At4g35610             --------->CCA1(2) -----ABI4(1)              --------->ARR11(1) --NtERF2                  --------->ARR14(2) ---->At4g35610            <---------ARR14(2) -----LBD16               <------ZmHOX2a(1) ---->ATERF1(1)     <------NtERF2 ----RAP2.6(1)     --------->LBD16 ----RRTF1(1)     <---------ANAC46 ----ATERF1(1)    <---------DEAR3(1) ----RAP2.3(1)   <---------LBD16 ----ORA47(2)    ------>NtERF2 >NtERF2         <---------At4g35610 ----DEAR4(2)    --------->ATERF1(1) ----ERF1        <------NtERF2 ---RRTF1(3)    <---------RAP2.3(1) ---RAP2.6(2)   <---------RRTF1(1) ---RRTF1(2)   <---------DEAR3(1) ---DEAR3(1)   <---------RRTF1(2)                                                        <---------AHL20(2) ---DREB2C(2)  <---------RRTF1(3)                                                        --------->AHL20(2) ---RAP2.3(3)  <---------RAP2.6(2)                                               <----------DOF2 ---ATERF1(2)  <---------RAP2.3(3)                <------------CBF            ------->TEIL ---RAP2.3(2)  <---------RAP2.3(2)           <---------At4g35610         --------->At4g35610 -->DEAR3(1)  <---------LBD16                <-------GAMYB          --------->DAG2   <---------ANAC46 --ABI4(1)   <-----------RAV1(1)             --------->At4g35610   ---------->DOF2  ---------->ID1   cggagaagcttcattttgcggcggagaaggatacgagttctctcttcagttgaattgaaactcgagaggtaaaggagatgaatcttttcgtttaaatggg  19317900                                                                                       <----------DOF2       --------->ATHB12                                                          <----------DOF2    <------------CBF                                        <-----------GT1    ---------->ID1  <---------YAB1<------------CBF                         ----------->GT1      <-----------GT1      <- --------->AHL20(2)     <---------AHL20(2)         <---------AHL20(2)    <---------AHL20(2)<---------   ccttaaaattgattagagcattgaaattaatgggccttacaaaaacgatttgttttattttgtaacatgttggatttttttttctttttctttcattgtt  19318000                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                        <---------MYB46(3)                              --------->YAB1                            <------MYB83                           --------->ANAC46                             <------MYB46(1)                        <---------ZAT18                               <---------WOX13(1)                <---------CCA1(1)                                   --------->ATHB12                <---------RVE1(1)                          <------------CBF<---------MYB46(3) -----------CBF<---------ARR11(3)           <------------CBF<---------WOX13(1)           <----------DOF2 ---CBF        --------->ARR11(3)--------->AHL20(2) <---------TOE2(3)<------------CBF ---------->ID1   ctattgagagaagttgagatatttagttcacatcataaattttgcaaattgttttaggtgagattgctatagattggttgttttttttgttctttttgca  19318100                  <---------YAB1                --------->YAB1                <---------ICU4               <---------YAB1               --------->ICU4                          --------->AHL20(2)             --------->YAB1                            <---------AHL20(2)             -------->HAHB4                           --------->YAB1                   ----------->HVH21             <---------ICU4              <---------AHL20(2)                    --------->ARR14(2)            --------->ICU4               --------->AHL20(2)                    <---------ARR11(3)          --------->YAB1                 --------->AHL20(1) --------->AHL20(2) --------->ARR11(3)          <--------HAHB4           ----------->GT1    <---------AHL20(2)      --------->RVE1(1)          <---------ICU4         ---------->DOF2----------->GT1               --------->CCA1(1)         --------->AHL20(2) --------------->AGL15     --------->AHL20(2)  --------->AHL20(2)       --         --------->ICU4     <---------------AGL15--------->At5g28300      <---------AHL20(2)     ----   agttgtttcgaataattatgatgactataacttaaaaaagaaataaaatactgtaattaaaatttaaaacccctaaataaatatcttctgtgatagttga  19318200                                    --------->HSFB2a(2)                              --------->ARR11(3)                              --------->GLK1(2)                              <---------ARR11(3)                                                 ----         ----------->GT1     --------->RVE1(1)                                             <--------- --------->GT1            --------->YAB1          ----------->RAV1(1)         ----------->GT1    ---- ------>DOF2      ----------->GT1   <---------HSFB2a(2)                     <---------ANAC46  <------   aaagagaaaactagttaatatggtgaaataaaaatcttcgagaccacttatcccacataagtccaatttcatcgtctggtttgtaacatttagctttaac  19318300  Previous    Next  AGI:  At1g51965.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to PGR3 (PROTON GRADIENT REGULATION 3) [Arabidopsis thaliana] (TAIR:AT4G31850.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82028.1); similar to Os02g0226900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046348.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45797.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 19315747    to: 19317814    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g51970.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10455.1) Range:  from: 19318211    to: 19318585    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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