Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   --------->WOX13(1)                                                                <---------AHL20(2)             ------ <--------ZAP1                              <<<<<<<ZML2         --------->AHL20(2)  --------->YAB1 -------HSFB2a(2)                   --------->GLK1(1)          --------->AHL20(2) --------->GLK1(2) ------>HSFB2a(2)              <---------YAB1      <-----------GT1     --------->MYB46(3)    --------   ctaggtcaaattgaatcccaaacacaaggggttatgagaaaccctagaacaaattactaccacaaataaatcaacaacgcgaagaatcagtatgccaaca  19108100                                                                  <---------------------WRI1                                                                <---------RAP2.6(2)                                                                <---------DEAR3(1)                                                               --------->RAP2.6(3)                  =                                                               --------->SPL7                       <      --------->MYB52(1)                                ------>NtERF2 ----------->RAV1(2)           =      ------>MYB83                                     --------->LBD16--------->At4g35610     <------      ------>MYB46(1)                                <---------LBD16  <---------At4g35610     <------    <---------MYB59                                  <---------At4g35610                      ------- --->ZAT6                 <------ZmHOX2a(1) <-----------GT1   <------ZmHOX2a(1)               <------ --->RAV1(1)        ---------->DOF2 ----------->GT1  --------->At4g35610                      <------   ctaaaacctaactaaaaacagcgaaagaggaagagatttagtgaaattacatctctgcggaccaggacggccatctgaaccaagtgattcgaaatcgcgt  19108200                        <---------HSFB2a(1)                        --------->HSFB2a(1)                       --------->GLK1(2)                      <---------GLK1(2)                   =====================HOX2a_HOX2a                                ------>NtERF2                   ------>ZmHOX2a(2)                                               --------->LBD16                  <------ZmHOX2a(2)          --------->ANAC46                    <---------LBD16 ---------->DOF2  ======================HOX2a_HOX2a                           --------->At4g35610 ========================HOX2a_HOX2a         --------->ANAC58         --------->ANAC58 ------ZmHOX2a(1)<---------ARR14(2)          --------->ANAC58      --------->ARR14(2) =========================HOX2a_HOX2a      --------->MYB52(1)      <---------GLK1(2) ---ANAC55(2)    --------->ARR14(2)        <---------ALFIN1    <---------At4g35610<---------ETT(1) ---ANAC58  ----------->HVH21       --------->ANAC46<---------AtMYB61 --------->ANAC58 -->ANAC55(2)------>NtERF2         --------->HSFB2a(2)      <----------DOF2<---------MYB52(1)<------- ---ANAC46<---------At4g35610      <---------HSFB2a(2)   ----------------------->TaNAC69(2)  ------>NtERF2 ---ANAC58--------->At4g35610    ------>ZmHOX2a(1)<----------DOF2  <---------ARR14(2)       ---------   gaggaaagacgacgctgacgatcggaatctttctcctcgcgaaacccacggcctttggtcttctttgctgattcgccattagctccggcaatagccgact  19108300                    --------->REM1(2)                   --------->ALFIN1                  <-------MYC3                  <-------MYC2                  ------->MYC3                  ------->MYC2                  <-------PIF5                 <---------ANAC46                 <---------ANAC58            --------------->AtSPL8                 <---------ANAC58            --------------->AtSPL3              --------->LBD16               --------->At4g35610         <-----------HVH21           --------->LBD16        --------->GLK1(1)            <-----------HVH21                              --------->ANAC58        <---------GLK1(1)       --------->At4g35610                          ----------->RAV1(2)   <---------LBD16------->PIF5  <---------ZAT2                               ------>ZmHOX2a(1) --RAP2.6(3)  <---------LBD16   --------->ZAT2   ------->TEIL             ------>ZmHOX2a(1)       <-- >DEAR3(1)  <---------LBD16     <---------At4g35610              --------->DAG2     --------->ANAC58<   taagcctcggatgtcccgcgcgtggagaaacatcagctccgtcaatagctgtaccttcttcgtccataaggtcatcctcctctggctcgaaatcgactgc  19108400                                     <---------GLK1(1)                                     --------->GLK1(1)                                    <---------ARR11(3)                                    --------->ARR11(3)                                <---------MYB52(1)                               --------->At5g28300                               <---------SPL7                             <------NtERF2                             --------->RAP2.3(1)                           --------->RRTF1(2)                           --------->RRTF1(3)                           --------->RAP2.6(2)                           --------->ATERF1(2)                           --------->DREB2C(2)                           <---------DEAR3(1)                           --------->DEAR3(1)                           --------->RAP2.3(3)                           --------->RAP2.3(2)                          --------->RAP2.3(1)                          --------->ERF1                          --------->ORA47(2)                          --------->ATERF1(1)                          --------->DEAR4(2)              <---------MYB52(1)                          --------->RAP2.6(1)             --------->ARR14(2)                          --------->RRTF1(1)     ------>ZmHOX2a(2)                         <---------At4g35610    <---------GLK1(1)                         <---------RAP2.3(1)    <------ZmHOX2a(2)                         --------->At4g35610    <<<<<<<<<GATA-1                         --------->LBD16        <<<<<<<<<GATA-2                         ------>NtERF2          <<<<<<<<<GATA-4            --------->ANAC58--------->ABI4(1)   <<<<<<<<<GATA-3            --------->ANAC58------>NtERF2      <---------AGP1   --------->DEAR3(1)               <---            --------->ANAC46<---------ATERF1(1)<---------ARR11(3)                               ----- -------At4g35610        <---------ATERF1(1)   --------->ARR11(3)------>NtERF2                ------- ---------YAB1          --------->ANAC46   <---------MYB52(1)  --------->ORA47(2)  <----------DOF2   ttctgattctatgttcgccatgacttccgccgccgtaagatttccgatagatctcttcccgtttcgccgactgattttttgtttcctttgtttttgggga  19108500                                                  --------->ARR11(3)     <----------DOF2                              <---------AHL20(2)  --------->ARR11(3)                              <---------AHL20(1)  <---------ARR11(3)<---------RVE1(1)             --------->AHL20(2) <---------GLK1(1) --------->ARR11(3)             --------->AHL20(1) <---------At4g35610<---------CCA1(1)             <---------ARR11(3) --------->GLK1(1) <---------ARR11(3)  <-----------TBP ------DEAR3(1)    <---------AHL20(1)  <---------ANAC46           <---------ZAT18 ---->SPL7        *TSS               ----------->GT1<------------CBF ---->HVH21    --------->YAB1------>NtERF2    <------ZmHOX2a(1)   --------->ZAT18<----------DOF2  <--   cggagctctttcttctatcaagatatttctctgccagtgttgtttataggaatatattggaccttaagtgggcttattttgggcttttacgcttgtattt  19108600                  <---------DAG2                  <----------DOF2                                  --------->ZAT18               ---------->ID1                                      <---------ZAT18                <--               <-----------GT1                                  --------->MYB52(2)            <------     --------->ANAC46                              ------>ZmHOX2a(1)                         <-------     --------->ANAC58    <----------DOF2     <-----------GT1 --------->TOE2(3)          -------------     --------->ANAC58---------->ID1    <---------YAB1        --------->YAB1             <---------DAG2 --------DOF2 <-----------GT1        <----------DOF2     <<<<<<<<<WRKY18                <----------DOF2   ctttctcacgctagtttttccttttcccttttaaacaggctttgattaaactcctctcgtcaatgttagtgggcttattttgggctcttactttttttat  19108700        --------->ANAC58        --------->ANAC58        --------->ANAC46   <----------DOF2           <----------DOF2 -------AHL20(2)     <---------At4g35610      <---------ANAC58 ---AHL20(2)         --------->At4g35610      <---------ANAC58                                <------ --AHL20(2)         --------->ANAC58    <---------TOE2(3)                                 <---------TOE1(3) -->AGL15           --------->ANAC58    <---------TOE1(3)          <----------DOF2        <---------TOE2(3)   ttattctttcacgcttcagagtaagctaagcctttgattttttaggtttcttacaaaacaggcttaagcctttgatgaaaacttctcttgttaatgttac  19108800                                                                --------->ATHB12                                                                -------->ATHB1         <---------ARR14(2)                                                                --------->ATHB51       --------->ARR14(2)                                       <----------DOF2          <---------ICU4        <------ZmHOX2a(1)                                      <---------DAG2    <---------bZIP60(1)         <---------TOE2(3)                                      <---------------AGL15    <---------ATHB51 <---------ICU4                                      --------------->AGL15    --------->ICU4   <--------HAHB4                            --------->YAB1              --------->bZIP60(1)     --------->ATHB51                            <---------ICU4            <---------ICU4           <---------YAB1                 --------->ETT(2)<---------ANAC58  --------->YAB1              --------->ICU4  ------ --------->At4g35610        --------->ATHB12<-----------GT1    <---------AHL20(2)  --------->YAB1 --- -----GT1        <---------ETT(2)<---------ANAC58 <-------TEIL --------->AHL20(2) --------->ICU4 <---   attatctgaatttcatatgtcgagagtgaatcatggcatacctttttaagcattcatgatgtcaaattattgtatcacttcataattaggatactatcaa  19108900                                                                   <-----------GT1    <---------YAB1                                                          <---------ICU4            <--------HAHB4                   --------->ZAT14                       <---------YAB1             <---------ICU4                   <---------ZAT14                     --------->YAB1               -------->ATHB1                  <---------DAG2                       <---------ICU4               --------->YAB1                  <----------DOF2                     <---------YAB1               --------->ICU4 --->WOX13(1)  --------->ZAT6              <----------DOF2--------->ATHB12         <---------YAB1 ------>YAB1<-----------GT1            <---------CCA1(2) --------->ICU4            <---------ATHB12 ------ATHB12<-----------GT1<---------ARR14(2)        --------->ICU4    <---------MYB52(1)       <---   tcatattgtggtatttaacactttacagtcgatactggtccatctctttgatggtgatcatcattgttttatccgtttgcatacaatcattatagtcgaa  19109000  Previous    Next  AGI:  At1g51510.1    Description:  Y14; RNA binding / protein binding. similar to GR-RBP6 (glycine-rich RNA-binding protein 6), RNA binding [Arabidopsis thaliana] (TAIR:AT1G18630.1); similar to unknown [Populus trichocarpa] (GB:ABK94013.1); contains InterPro domain RNA binding motif protein 8; (InterPro:IPR008111); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 19106467    to: 19108518    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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