Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         <---------ARR14(2)                                                       --------->ARR14(2)                                                    <---------TOE1(3)                                                <---------DAG2                                                <----------DOF2                                              ------>MYB83 --------->At4g35610                                              ------>MYB46(1)                                            <---------MYB111(1)                               -------                                --------->KAN4(1)   <---------YAB1 --------->GLK1(2)          <------                      <---------ANAC55(1)   <---------MYB59<---------At4g35610               ------>MYB46(1)                    <-----------GT1         <---------MYB46(2)   <---------KAN4(1)   --------->YAB1                <---------AHL20(2)       <-----------GT1   ------>ZmHOX2a(1)        <---------YAB1        <<<<<<<<<<MYB80         <---------KAN4(1)   <---------TOE2(3)          <---------ZAT6------>MYB83   tttgtattttggtttgagttaattacgagttggattgttcttcttacctactttatggttcctctgaataatctattcgtagtcttatcaaaaccaaatc  19051200                                         --------->YAB1                                     <---------ANAC46                                     <---------ANAC58                                     <---------ANAC58                                --------->ATHB51                                -------->ATHB1                                -------->HAHB4                                <---------ICU4                                --------->ATHB12       <---------ANAC58        --------->ICU4                                  --------->At4g35610       <---------ANAC58        <---------YAB1                                  <---------At4g35610  --------->DAG2            <---------AHL20(2)                      --------->YAB1 ---------->DOF2        <----------DOF2 <-------TEIL    --------->bZIP60(1)  ======================== -->ARR14(2)  ------->TEIL  --------->AHL20(2)          <---------bZIP60(1)  <------ZmHOX2a(1) ---ARR14(2)  --------->GLK1(2)<---------ATHB51 --------->YAB1     <---------YAB1   caaaaaagtacttgtgaatctatttcctttttaattattgcgttcataaatgaaaatgacaccatttttatcatagtgaggagctcaaatttcaaaactt  19051300                                                                      <---------ANAC46            <--                                                                   <---------GLK1(1)           <-----                                                                   --------->GLK1(1)           ------                                                                  <---------ARR14(2)       <------NtERF2                                                                  --------->ARR14(2)      ------>NtERF2                                                                 <------NtERF2           <---------ALFIN1                                                               <---------ANAC46          --------->DEAR3(1)                     <---------MYB59                          <---------LBD16           <------NtERF2                 <---------ZAT14                             <---------RAP2.3(1)        --------->ATERF1(1)                 --------->ZAT14                             <---------ATERF1(1)       ------>NtERF2                 --------->ZAT18                             ------>NtERF2             <---------ATERF1(1)               <---------------AtSPL3                       <---------RAP2.3(3)       --------->ANAC46    --------->LBD16 <-----------------AGL1                  <---------DEAR3(1)       --------->ATERF1(1)  ------>ZmHOX2a(2)------->TEIL                --------->LBD16<------NtERF2          <------NtERF2--- ========HOX2a_HOX2a----------------->AGL1   <---------LBD16<---------RAP2.3(2)     <---------ATERF1(1)   ttgatccgagacatctaagtgtaccgaaatttgaaacgggttatgtctccggtgtaatttcgacggcggatttcgtcgattacagtcgtcgccaccgtat  19051400                                                             <------------CBF                                                   <---------bZIP60(1)                                                   <---------bZIP60(2)                                                   <---------TGA1a                                                   --------->bZIP60(1)                                                   --------->TGA1a                              -----                                                   <---------O2                                 -----                                                   --------->O2                     --------->ANAC46                                    <---------ANAC58       <---------YAB1  <--------ATHB1       ----- -------AHL20(2)      <---------ATHB51          ----------->HVH21          --------->YAB1       ----- ----ARR14(2)  <---------At4g35610  <---------ANAC58   <---------DEAR3(2) <---------ATHB12 <---------SPL7 --->ARR14(2)  --------->At4g35610  <---------ANAC46  <---------DEAR3(1)  --------->ICU4 <------NtERF2 ------>AHL20(2)      <---------ATHB12          --------->WRKY12      ------------>CBF <---------DEAR3(1)   attaatacacatttggaagctcaaataatgggcttcttgcttgaagcccattgacgtcggtactattgtatttgcaatgattttaaacgtcgtcgtacaa  19051500         --------->ARR14(2)         <---------ARR14(2)                         ------>NtERF2      --------->YAB1                               <---------ETT(1)   --------->WOX13(1)                   --------->HSFC1(2)  --------->AHL20(2)                    <---------HSFC1(2)    ------>ZmHOX2a(1)  <---------AHL20(2)                --------->LBD16--------->ANAC46                      <----------DOF2 ---->ANAC46                 <---------CCA1(2)     --------->LBD16               <---------GLK1(1) ---->ANAC55(1)              <---------At4g35610   ----------->HVH21             --------->GLK1(1) ---->ANAC58           <----------DOF2 <---------ALFIN1  <----------DOF2    --------->RAP2.6(3) ---->ANAC58    ---------->DOF2   <---------LBD16 *TSS<---------ALFIN1     --------->MYB52(1)    ----   gtaataaatcagaacccctaaaacccttttcatctctccggacacttcttctcccgacactttcctcttcaaatcccaaacggctatctgactttggaag  19051600                                                                --------->MYB46(3)                                                          <---------------------WRI1                         <---------YAB1          <-----------ARR10                         <---------TOE2(3)       --------->GLK1(2)                    --------->YAB1              ----------->GT1                    <---------ARR14(2)                 ------>MYB83  ---       <-------TEIL   <---------YAB1             --------->ARR14(2)                --------->WOX13(1)      --------->GLK1(2)  <---------HSFB2a(2)    <---------GLK1(2)   --------->AtMYB61<---------ATHB12 ------>DOF2 --------->ALFIN1      <----------DOF2     <---------ZAT6---------->DOF2------>MYB46(1)   aaagagagattcagagtggagaatattatggaaggaactttagatgaagagaatctagtcttcgaaaccaccaaaggtatcaaaccaatcaagagtttcg  19051700                                      --------->ZAT6                               <---------ANAC46                              ------>NtERF2                                       <---------MYB46(3)                             --------->LBD16          <-----------GT1 --------->ZAT2                           <---------LBD16   --------->At5g28300      <---------ZAT2           ======                     --------->ARR11(3)      <-------GAMYB --------->At4g35610   <---------AtMYB61 <-                  --------->DAG2     <---------YAB1--------->ANAC58   <---------At4g35610--------->ARR14(2)              --------->YAB1<---------DEAR3(1)     --------->ANAC46   --------->At4g35610<---------GLK1(2)            <---------WOX13(1)<------NtERF2 ----------->GT1----------->RAV1(2) ====================== <---------bZIP60(2) <---------ARR11(3)    <---------TOE2(3)      --------->GLK1(2)      <---------ARR14(2) -------->HVH21  ---------->DOF2<----------DOF2    --------->ANAC58<-------TEIL<----------DOF2 ------   atgacatggggatgaatgataaagttcttcgcggcgtttatgactacggttacaagaaaccatctgagattcagcagagagctttggttccgattctcaa  19051800        --------->TGA2(2)       <-----------TGA1       <-----------HVH21      --------->TGA2(1)      --------->TGA1a      <---------TGA1a      <---------O2                                                                              <----      <---------bZIP60(1)                                                                       -----      <---------TGA2(1)                                                                        <-----      --------->bZIP60(2)                                                              <---------HSFB2a(2)      --------->O2                                                                     --------->HSFB2a(2)      --------->bZIP60(1)                                                            ------>ZmHOX2a(1)      --------->ANAC58                                                           --------->ARR14(2)      --------->ANAC55(2)         ----------->GT1                                <---------ARR14(2)      --------->ANAC58           <---------ZAT6                                 <---------CCA1(2)     <-----------STF1        <---------MYB52(1)                                 --------->GLK1(1) ===============bZIP_DOF    --------->LBD16    <---------YAB1            --------->TOE2(3) <--------- -----ZmHOX2a(1)          ----------------->AGL1  <---------WOX13(1)  --------->ARR14(2)  ---------->DOF2 ===============bZIP_DOF  <-----------------AGL1--------->ATHB12      <---------ARR14(2)--------->LBD16 ---->DOF2      <-----------RAV1(2)       --------->TOE2(3)   <---------MYB52(1)<---------GLK1(1)   aggacgagacgtcatagctcaggctcagtccggtactggtaaaacctctatgattgctatctccgtttgccaaatcgtcaacatatcctccagaaagtac  19051900                                                           --------->ZAT18                                                           <---------ZAT18                                                  <---------------AGL15                                                  --------------->AGL15                            <-                                                 ----------------->AGL3                       ------>ZmHOX2a(2)                                                 <-----------------AGL3                     <--------                                                 ----------------->AG                 <---------YAB1                                                 <-----------------AG               --------->ATHB12                                                 <-----------------AGL1            --------->ICU4 <--                                                 <-----------------AGL2            <---------YAB1 <--                                              <---------GLK1(1)                  --------->ANAC55(2)            --------->LBD16                   --------->GLK1(1)                  <---------ANAC55(2)          <---------LBD16                    <---------GLK1(2)       <---------AHL20(2)     --------- -----ANAC55(2)                      <----------DOF2    --------->MYB59        <-----------GT1======= ---->ANAC55(2)                      <---------DAG2     <---------TOE2(3)   <---------ICU4 --------->YAB1 --TEIL   ----------->RAV1(2)   <-----------GT1  ----------------->AGL1  --------->YAB1  <---------TOE2(3) ------AtSPL3                --------->YAB1  --------->ARR14(2)      --------->AHL20(2) --------->YAB1   gtctctgttttcccctgagattgaaaacaaatagtaaccctttttcagatttccaatttaggtcactaaaatttatcagaattacatgattaatgatctt  19052000   <---------YAB1 ---------DOF2                                                                                   <--- -ARR11(3)                                                               ------>ZmHOX2a(2)       ---- -------ANAC58       <---------ANAC55(2)                               --------->ARR11(3)        <--- -------ANAC58  <------ZmHOX2a(1)                                      <---------ARR11(3)        ---- >ARR11(3)    <---------TOE2(3)                                       --------->YAB1        <-------TEIL ======================HOX2a_HOX2a                   ----------->GT1<---------TOE2(3)--------->ICU4   gctttgtaattgagttgaggaacacttatctgtttctccaatttgctaatctacttggtaatacatagttaatgatcttgctctgtaattaagatgcaga  19052100  Previous    Next  AGI:  At1g51370.1    Description:  F-box family protein. Identical to F-box/FBD/LRR-repeat protein At1g51370 [Arabidopsis Thaliana] (GB:Q6DBN6;GB:Q3ECS4); similar to F-box family protein (FBL13) [Arabidopsis thaliana] (TAIR:AT5G53840.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74740.1); contains InterPro domain Leucine-rich repeat 2 (InterPro:IPR013101); contains InterPro domain FBD (InterPro:IPR013596); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain FBD-like (InterPro:IPR006566) Range:  from: 19048880    to: 19051121    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g51380.1    Description:  eukaryotic translation initiation factor 4A, putative / eIF-4A, putative. Identical to DEAD-box ATP-dependent RNA helicase 34 (RH34) [Arabidopsis Thaliana] (GB:Q9C8J1;GB:Q9SYE0); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G19760.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48730.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro: Range:  from: 19051550    to: 19053830    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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