Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100               --------->ANAC46       --------->YAB1                                                 --------->AHL20(1) --------->YAB1                                                       <---------AHL20(1) --------->AHL20(2)                                                   <---------ARR11(3) ---------YAB1                                            --------->AHL20(2) -------->ICU4--------->TOE2(3)              <---------YAB1  <---------YAB1                        -- ------AHL20(2)          ----------->GT1 <----------DOF2  <---------AHL20(1)                 -------- ----->AHL20(2)       ---------->DOF2 --------->ARR11(3)  --------->AHL20(1)                 -------- --->ANAC55(2)<-----------HVH21       <---------ARR11(3)  <---------AHL20(2)                 -------- -AHL20(2)   <----------ID1 ---------->TaMYB80 ---------->DOF2    --------->YAB1     <---------ANAC46   taattataaacataaacgtcaaatgaaaggtatatactaacatctttatgaaagttgaaatttattattcaaaatatttgttttttctcgtgtaaacgca  18737300                                                                         <------ZmHOX2a(1)                                                                         ============================                                                                      <-----------RAV1(2)                                                                    ------>ZmHOX2a(1)                                                                    =================================                                                                --------->ARR14(2)                                                               <---------GLK1(1)                                         ------>MYB83          --------->GLK1(1)       --------->REM1(2)                 ------>MYB46(1)  =================HOX2a_HOX2a    <---------ANAC58                     -------->P       ------>ZmHOX2a(2)    <---------ANAC58        --------->TOE2(3)             ======================HOX2a_HOX2a       <--    <---------ANAC46        --------->YAB1--------->MYB46(3)--------->LBD16                       <--  --------->MYB52(1)        --------->TOE1(3)           --------->ARR11(3) --------->ZAT2    -------- ------->TOE2(3)          <---------TOE2(3)     <---------ANAC46--------->GLK1(2)   --------->ZAT14 ->ANAC46             --------->YAB1   --------->AtMYB61<---------ARR11(3) <---------At4g35610   <--- ->ANAC58      <---------ANAC46       --------->MYB46(3)<---------ARR14(2) --------->At4g35610   ---- ->ANAC58<---------ZAT14 --------->MYB52(1)     --------->ALFIN1<---------ARR14(2)  <---------ZAT14 -   aacttaacgtgtaaactgcgtttaaaataacgataacaaaaccaacctctgtgtggatgatctgggaatcctgcaggagctgaaactgcagtttttaaag  18737400                                                                    --------->TGA1a                                                                    ----------->RAV1(2)                                                                    <---------TGA1a                                                                    <---------O2                                                                    --------->O2                                                                    --------->ZAT2      --------->GLK1(2)                                             <---------ZAT2   --------->AHL20(2)                                              --------->MYB52(1)   <---------AHL20(2)                                              ------>MYB83 <---------YAB1                                                    ------>MYB46(1) ====HOX2a_HOX2a                                                  <---------ALFIN1 ====HOX2a_HOX2a                                             --------->ANAC58               --------- -------YAB1                                             --------->CCA1(2)               --------->ANAC58 ----ZmHOX2a(2)                                         <----------ID1               <------ZmHOX2a(1) -->DOF2 ----------->HVH21                          ==========================bZIP_DOF   --------->ANAC58 ------ARR11(3)                 XXXXXXXXXXXXXXXXXXXX>MIR415  --------->ANAC58     --------->HSFB2a(2) ----->ARR11(3)          ---------->DOF2            ---------->DOF2-------->P     <---------HSFB2a(2) -------->TOE2(3)    <---------WOX13(1)        <------ZmHOX2a(1) --------->MYB46(3)--------->LBD16   atcattaaaatctgacaagttggattgaaaagaacagagcaaaaacagaggaagaaaagagacaagacccacctgagaattcatccaggacaagaaatgg  18737500                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <-                                                           --------->ZAT14                         --      --------->At4g35610                                  <---------ZAT18                         <-     --------->ARR14(2)                                    <---------ZAT14                       <---     --------->GLK1(2)                                    <---------------AGL15                <-----     <---------ARR14(2)                        <----------DOF2                             ------>ZmHOX2a(1)   <---------HSFC1(2)                          <---------DAG2                          <---------ARR11(3)   --------->HSFC1(2)                    <-----------GT1 <-----------------AGL3 --------->At4g35610<- >CCA1(2)          --------->TOE1(2)    <-----------GT1<---------ICU4   <---------TOE2(3) --------->TOE2(3)   gtcgaagtatctgaactcaaacctgcaaaatttcacacatattaaacctctttttcattactacacttggaactaatgaaacagcacaaaatccttcatg  18737600             --------->HSFB2a(1)          <---------At4g35610           ------>ZmHOX2a(1)       ------>MYB46(1)                 --------->TOE2(3)  <-----------GT1                   --------->ARR14(2) -------GAMYB--------->HSFC1(2)     <---------ARR14(2)                            --------->TOE1(1) ---------ANAC58                   ------>MYB83------->TEIL                       --------->TOE2(1) ---------ANAC58                   ------>MYB46(1)                            -------->P -----MYB83  <---------HSFC1(2)  <---------MYB111(1)                         --------->MYB52(1) ------->MYB52(2)               --------->ANAC58            ---------->DOF2 ------->GAMYB           < -----MYB46(1)                  --------->ANAC58--------->At4g35610        --------->MYB46(3)       - -----P------>MYB83            ----------->RAV1(1) <-----------HVH21       <---------MYB52(2)      <- ------RAV1(1)               --------->At4g35610<---------At4g35610     --------->MYB46(3)  --------- --------MYB46(3)           ------->GAMYB   <---------REM1(1)--------->DAG2<---------MYB111(1)     --   ttggttaccttccgatgcttcttcttacaacagcaccaaatccttcatgtagctgtctggcgaaaagcttcttaacaactaacctcgtattagtagcaga  18737700                                                                                             <------- ---------GLK1(1)                                                                     <-------------- -------->GLK1(1)      ------->TEIL                                    --------->At4g35610   <------- --------ARR11(3)     <---------CCA1(2)   <---------ZAT6   <---------MYB46(3)      <-----------TBP >At4g35610<---------WOX13(1)       <---------ZAT6 <---------YAB1------->TEIL     ------->TEIL <----- ------->ARR11(3)     <---------GLK1(2) ----------->GT1<---------AHL20(2)     <---------ARR11(3)-----   agatttctctgagattggcatcttgaatctcttagagagagttagtgaaaaatatgtttatttgttgaatctctgatgaagatgtatttatagttaagga  18737800                                                      --------->YAB1                                                    --------->AHL20(2)                 <---------MYB52(1)                 --------->AHL20(1)                      ------>NtERF2                --------->At4g35610                --------->YAB1                          --------->ANAC58   <---------MYB46(3)   --------->ICU4       ------->GAMYB                                 --------->RAP2.6(2) --TOE2(3)      >>>>>>>>>TAC1             <-----------GT1               ------------>CBF   --------->ANAC46 ---AG   <------------CBF              --------->TGA2(1)          --------->ATHB12         --------->ANAC58 --TOE1(3)      <---------At4g35610    --------->bZIP60(1)       --------->AHL20(2) --------->YAB1 -ZmHOX2a(1)    <-------GAMYB          <---------bZIP60(1)       <---------AHL20(2)<---------YAB1 ----->DOF2 ------------>AtMYB77       <---------REM1(1)     <---------YAB1      --------->YAB1   aagagttgttgtattgacagttggccaaaattaagaagatgatgtaaccccaaaaataataagatgatttattagtcaatgttttataataagacgccat  18737900                                                          --------->DOF5.7(2)                                                          <---------MYB52(1)                                                         --------->TOE2(3)                           --------->YAB1                --------->TOE1(3)                        <----------DOF2                 <---------ANAC55(2)  ----------->GT1                    <----------DOF2            <-------TEIL  --------->At4g35610                <----------DOF2  XXXXXXXXXXXXXXXXXXXX>MIR420 <---------At4g35610                <----   tttttgtcagtttaaaaactttctttctttgataaacttatctccaaaatgcattaatacgttagcagaagtatatgtttagaaaatagggatttagatt  18738000                     --------->TGA2(2)                                                     --------->ZAT14                    <-----------TGA1                              <---------ARR11(3)       <---------ZAT14                   --------->bZIP60(1)                  --------->ANAC46                   <---------ZAT18                   <---------bZIP60(1)                  --------->ANAC58                  -----------                   --------->ANAC55(2)                  --------->ANAC58                 ------------                   <---------ANAC46              --------->YAB1   --------->ARR11(3)     <-----------                   <---------ANAC55(2)          <---------YAB1---------->DOF2          --------->DAG2                   <---------ANAC58        --------->YAB1     --------->YAB1          ---------->DOF2                   <---------ANAC58     <---------CCA1(2)    <---------ATHB12  ---------->DOF2  ----- ---TEIL<---------MYB46(3)    --------->YAB1<----------DOF2  --------->ICU4  <---------YAB1--------->ZAT18   caaacatcgatggtttgagttgcgtcatcaattcatcatcttctatctttataataactcgcaataaagatgtttcattttgaaaggcaaaagtgtacaa  18738100                                                     --------->ARR14(2)                                                     <---------ARR11(1)                                                     <---------ARR14(2)                                         -------->ATHB1                                         --------->ATHB51                                         --------->ATHB12                                         <--------ATHB1                                         <------------ATHB5                                         --------->YAB1                                         <---------ICU4                         <-------PIF5   <<<<<<<<<<AGL24                         ------->PIF5   <<<<<<<<<<AGL20                         --------->LBD16<---------ATHB12 >GT1                   <---------ANAC46--------->ICU4 --->AtSPL8         ------->TEIL        <<<<<<<<<<AGL22 ----AtSPL8         --------->TCP16(1)  <---------ATHB51                                     -------- ---->ANAC46 --------->DOF5.7(2)        <---------YAB1                           <---------ZAT6<<<<<<   atcacacattgactcgttaatggaccccgtggatatatcccaattattgcatccgaatccacagttttttttgtttttgtttagtggtcgtccatatgtt  18738200  Previous    Next  AGI:  At1g50590.1    Description:  pirin, putative. Identical to Putative pirin-like protein At1g50590 [Arabidopsis Thaliana] (GB:Q9LPS9;GB:Q9C6P9); similar to pirin, putative [Arabidopsis thaliana] (TAIR:AT2G43120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38866.1); contains InterPro domain Pirin (InterPro:IPR012093); contains InterPro domain Pirin, C-terminal (InterPro:IPR008778); contains InterPro domain Cupin, RmlC-type (InterPro:IPR011051); contains InterPro domain Pirin, N-terminal (InterPro:IPR003829) Range:  from: 18736046    to: 18737721    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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