Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       ------>ZmHOX2a(2)                                    <------ZmHOX2a(2)                                   --------->ARR14(2)                                   <---------ARR11(3)                                   --------->ARR11(3)                                   <---------ARR14(3)        <---------AHL20(2)                                   --------->ARR14(3)      <---------AHL20(2)          --------->At4g35610                                   <---------ARR14(2)   <---------AHL20(1)             <---------At4g35610 ---->RAV1(1)                      --------->AGP1       <---------AHL20(2)           <--------P >MYB46(3)                         <---------AGP1       --------->AHL20(1)   <-----------HVH21 -MYB59                       --------->AHL20(2)       --------->AHL20(2)    *TSS   <---------MYB52(1) >AtSPL8               ----------->GT1           ---------->DOF2  <-----------GT1<---------LBD16   aaaactactctcaggctctctcaaattgtcaatttaagatcttgacagacaaaaagattatatttttatctccgttcaacttcaccggtagctccatgac  18734100                                                         <---------GLK1(1)                                                        <---------ARR14(2)                                                        --------->ARR14(2)                                                    ------->MYC3                                                    <-------MYC3                                                    <-------MYC2                                                    <-------PIF5                                                    ------->MYC4                                                    <-------MYC4                                                    ------->PIF5                                                    ------->MYC2                                                   --------->O2                                                   <---------O2                                                   --------->TGA1a                                                   <---------TGA1a                                            --------->YAB1          ---------->DOF2    --------->TOE2(3)     --------->ANAC46      --------->ANAC46      --------->YAB1  -------->ATHB1      --------->ANAC58      <--------HAHB4  <--------HAHB4                  <---------YAB1      --------->ANAC58     <---------YAB1   <---------ICU4              ----------->GT1    <---------ALFIN1     --------->YAB1     --------->ATHB12  ------>ZmHOX2a(1) --------->PCF2       =======================================bZIP_DOF  ----------->GT1             -- --------->ANAC46     <----------DOF2      --------->ICU4--------->GLK1(1) --------->AHL20(2)   <----   tatgccccactccaaagcatagggcttttatcattaactaatagaatcattacacgtggatttcctattccaactgttaaaattggattttgagcattga  18734200                                             --------->YAB1                                   <------                                            <---------AHL20(2)                                <------           ----------->GT1          ----------->GT1             ---------->DOF2            <---------     <---------ICU4              --------->MYB52(1)          ----------->GT1            --------->ARR11(3)    <---------YAB1  --------->YAB1 --------->ZAT6           --------->ZAT6 ------>ZmHOX2a(2)  <------ ------->CCA1(2)   <---------AHL20(2)       --------->AHL20(2)--------->At5g28300       <---------ARR11(3) -----TOE2(3)      --------->AHL20(2)--------->At5g28300  --------->MYB52(1)      <---------AHL20(2)   gatttgattatttcagtaaaatttataatgcaagttaacagtaaaatttataatgcaagttaacagtaaaacactgatctatattttaaagatttgttgt  18734300                                               ------------>CBF                                              --------->ANAC46                                              --------->ANAC58                                             --------->WOX13(1)                                            ---------->DOF2                                      --------->ANAC46                                      --------->ANAC58                                      --------->ANAC58                                     <-------MYC3                                     ------->MYC3                                     ------->PIF4                                     ------->MYC2                                     <-------PIF4                                     ------->PIF5                                     <-------MYC4        --------->ANAC58             <-------PIF5   --------->YAB1        --------->ANAC58             <-------MYC2--------->WOX13(1) -----RAV1(1)                    <------NtERF2--------->ANAC58 ---MYB46(3)               ------->MYC3    <---------ATHB12               <---------AHL20(2) --RAV1(1)              <---------ALFIN1 --------->WOX13(1)        <---------At4g35610             <- ---REM1(1)<----------DOF2 <-------MYC3------------>CBF            --------->At4g35610       --------   tgcaacttgcaagctttatacattcaacacatggtggcacatgcaatcaagcaattagcacctaaacacagcttaaataatcccacttaatatttaagac  18734400                                 <---------ATHB12                                 --------->MYB46(3)                                -------->P                               ------------>CBF                            --------->ANAC58                           <---------WRKY38(1)     --------->AHL20(2)     --------->ANAC58            ----------->GT1<---------WRKY12   <----------DOF2         --------->DAG2             ---------->DOF2 --------->WRKY18(1) --------GLK1(2)          ---------->DOF2 --------->HSFB2a(2)    --------->DAG2               ------- ->ANAC46            ---------->DOF2      <---------HSFB2a(2)   ---------->DOF2  ---------->ID1   acattcttttaatatcaactacacaaagaaaagcaaccattcttctataacttgagtaaagaaaaaaaaagggtcaacaatttggctctcttgaagaaat  18734500                                                                        <---------MYB55(2)                                                                        <---------MYB52(2)                                                        <---------ARR14(2)           ---------->DOF2                                                        <---------ARR11(3)     <---------ZAT2                                                        --------->ARR14(2)     --------->ZAT2                                  <------MYB46(1)       --------->ARR11(3)     --------->At4g35610                                  <------MYB83          <-----------ARR10------->GAMYB                                 --------->MYB59        <---------ARR11(1)     <---------At4g35610                       ------->TEIL            <---------YAB1           <---------MYB111(2) <------ZmHOX2a(2)  --------->ANAC55(2)      <---------At4g35610      ----------->RAV1(1)<-----------HVH21 -->CCA1(2)    <----------DOF2   <---------AtMYB61     <---------CCA1(2)--------->MYB46(3)       <---   gggatcaaaatttcatgcttttatgtatccatggtttggttttggtcatatgattccatatcttcatttagccaacaaactagctgagaaaggtcatagg  18734600                                       --------->MYB46(3)                                      -------->P                                      ------>MYB83                                      ------>MYB46(1)                                --------->ZAT2                     <---------At4g35610                                                       <-----                --------->ANAC58<---------At4g35610                                            ------             --------->LBD16    --------->At4g35610                                          <-------          ------>ZmHOX2a(1) --------->ANAC46                                                ------>ZmHOX2a(1)  <----------DOF2 ---------->DOF2   <---------ALFIN1                                      =========== --------HVH21  --------->ANAC58<---------ZAT2                       <----------DOF2      -----------   gtcactttcttcctccccaagaaagctcataagcagctccaacctctcaatctgttcccagacagcattgtctttgagcctcttactctccctcctgtcg  18734700                                ------>ZmHOX2a(2)                               <------ZmHOX2a(2)                                     <------ZmHOX2a(2)                               --------->GLK1(1)                                <---------ANAC55(2)                 ------>NtERF2--------->ARR11(3)                                --------->ANAC46                --------->DEAR3(1)                                        ------>ZmHOX2a(2)               --------->ATERF1(1)                                       --------->GLK1(1)               <------NtERF2  <---------ARR14(2)                         <---------GLK1(1)       <----------DOF2        <-----------ARR10                         --------->ARR11(3)    -------      <---------DAG2          <---------ARR11(3)                        <---------ARR11(3)    ------- ----ETT(2)   ------>NtERF2   --------->ARR14(2)                        ------->TEIL<-----------HVH21 --->ETT(2)   <---------RAP2.3(1)                                       <---------AGP1    <------ZmHOX2a(2) ----HVH21   <---------DEAR3(1)<---------GLK1(1)             <---------MYB46(3) --------->ANAC55(2) =====================RAV <---------LBD16                 --------->ARR14(2)    --------->ANAC58 >RAV1(2) <-----------RAV1(1)<---------CCA1(2)            <---------ARR14(2)    --------->ANAC58 ----   atggtctcccttttggcgccgagacagcctcggatctcccaaactcaactaagaaacccatattcgttgccatggatctcttacgcgatcagatcgaagc  18734800                                                        --------->ARR14(2)                                                        <---------ARR14(2)                                                      --------->LBD16                                                     <---------------AGL15                                                     --------->HSFC1(1)                                                     --------->HSFB2a(2)                      ------>ZmHOX2a(2)              <---------HSFB2a(2)                    <---------AGP1                   <---------HSFC1(1)         <----------DOF2    <----------DOF2          --------------->AGL15    <---------ANAC58--------->AGP1                  <-----------------AGL1    <---------ANAC46<-----------ARR10               <-----------------AGL2                        <--    <---------ANAC58--------->ARR14(2)              ----------------->AGL3                       ----   <---------DEAR3(1)<------ZmHOX2a(2)              ----------------->AGL1                       <---   <-------TEIL     <---------ARR14(2)              ----------------->AGL2                       <XXX -->ANAC58          <---------ARR11(3)          <---------ANAC58              ---------->DOF2    <XXX -->ANAC58          --------->ARR11(3)          <---------ANAC58<---------At4g35610         --------- ------>DOF2       <---------CCA1(2)       --------->ATHB12     --------->At4g35610     --------->WOX13(1)   aaaggtccgtgctttgaaaccagatctaatctttttcgattttgttcattgggttccagaaatggcagaagagtttggaataaagagtgtcaattaccag  18734900                                                                                          <---------ANAC58                                                                                          <---------O2                                                                                          <---------ANAC58                                                                                          <---------bZIP60(2)                                                                                          <---------ANAC55(2)          <---------ANAC58                                                                <---------ANAC55(1)          <---------ANAC58                                                                --------->ANAC55(2)         --------->At4g35610                                    <---------GLK1(2)     <-----------HVH21         <---------At4g35610                                  --------->LBD16         ===============         --------->ZAT2                                     <---------LBD16          --------->bZIP60(1)         <------NtERF2                                     --------->LBD16           <---------ANAC58         <---------ZAT2                                    ------>NtERF2             <---------ANAC46   --------->RAP2.6(3)                                    --------->ANAC46           <---------ANAC58  <---------ARR14(2)                                      --------->DEAR3(1)         <---------bZIP60(1)  --------->ARR14(2)                                    ------>ZmHOX2a(1)     ======================= ----ZmHOX2a(2)                                    --------->GLK1(1)          ---------->DOF2 ----->ARR11(3)                    --------->STY1(1)<---------ARR14(2) ------>ZmHOX2a(1)  <---------ANAC46 ------ARR11(3)                    <---------STY1(1)--------->ARR14(2) <----------DOF2<----------DOF2 XXXXXXXXXXXXXXXXXXMIR167D      ------->TEIL       <---------GLK1(1)   ============================== XXXXXXXXXXXXXXXXXMIR167C  <---------ANAC58     <---------TOE1(3)     --------->TOE2(3)<---------MYB52(1) >MYB52(1)<---------ANAC46 <---------ANAC58     <---------TOE2(3)   <---------YAB1--------->ALFIN1   atcatatcggcagcttgtgtagctatggttcttgcacctagggctgaattagggtttcctccgccggattatcctttatccaaagtggcgttacgtggac  18735000  Previous    Next  AGI:  At1g50575.1    Description:  lysine decarboxylase family protein. similar to putative lysine decarbxylase [Nicotiana tabacum] (GB:CAO91858.1); contains InterPro domain Conserved hypothetical protein CHP00730 (InterPro:IPR005269) Range:  from: 18732387    to: 18734077    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g50580.1    Description:  glycosyltransferase family protein. similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G29630.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN63555.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) Range:  from: 18734499    to: 18735845    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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