Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                    <-------TEIL                                                                 --------->CCA1(2)                                                                 <------ZmHOX2a(2)                                                                 =============================HOX2a_HOX2a                          <---------ARR14(2)                    <---------ARR14(2)                      ------>ZmHOX2a(2)                         --------->ARR14(2)                    <---------AGP1                              <---------ARR11(3)                    <---------ARR14(2)                   >>>>>>>>>GATA-4               <------ZmHOX2a(1)              --------->ARR14(2)<---------ANAC58         >>>>>>>>>GATA-3              --------->ANAC46         <-----------GT1  --------->ARR14(2)             >>>>>>>>>GATA-2  --------->TOE2(3)         --------->MYB52(1)<---------GLK1(1)             >>>>>>>>>GATA-1------->TEIL --------->LBD16 ------->ARR14(2)   --------->ARR11(3)                   <---------ARR14(2)         <---------LBD16 < --------ARR14(2)   --------->ARR14(2)    <---------ARR14(2)    --------->AGP1      --------->HSFB2a(2) ->ARR14(2)   <---------ARR14(2)<---------ANAC58 <---------MYB46(3)    <---------CCA1(2)  --------->ICU4 --ARR14(2)  xxxxxxxxxxxxxxxx>smallRNA(s) --------->ARR14(2)    --------->ARR11(3)  <---------HSFB2a(2)   gaatccgatattaacggatttggatctggatatgtcgtttctcatatatggtggatgtggattcaagatccatgtatcttaaaattccaggaaatattag  18675400                                                                                  <----------DOF2                                           <---------AHL20(2)                  <-----------GT1                             <---------LBD16                              <---------YAB1                         --------->GLK1(1)<---------AHL20(1)             --------->AHL20(1)            <---------WOX13(1)     <---------At4g35610                   <---------AHL20(1)            <---------YAB1<---------ARR11(3)                             <---------AHL20(2)          --------->ATHB12--------->ARR11(3)             --------->YAB1  --------->AHL20(2)    <---------ALFIN1     <---------GLK1(1)<---------AHL20(2)           --------->ICU4--------->AHL20(2) <---------ZAT18       --------->YAB1     --------->AHL20(2)  <---------YAB1   <---------AHL20(2) ---------ZAT6 <---------TOE2(3)   --------->At4g35610--------->WOX13(1)--------->YAB1          -----   tagtgtccaccttgattaatgtaaatgatatctcggaagctcaattttttttatgtcaattagtatttttgaaattataatttacttttatataagaaat  18675500                                                           <---------AHL20(2)                                                          --------->AHL20(2)                        <                                                          <---------AHL20(2)                       <-                                                    --------->YAB1                              -----       --------->AHL20(2)                           <-----------GT1                             <----       --------->AHL20(1)                       <---------AHL20(2)                       <---------ANAC58       <---------AHL20(1)                      --------->AHL20(2)                        <---------ANAC46   <---------ZAT6--------->YAB1         ----------->GT1   <---------AHL20(1)             <---------ANAC58 ---->ICU4 <-----------GT1 --------->YAB1  <---------AHL20(2)                      <---------AHL20(2)   ttttagtgatatattacattcaaaaccaataagaaacagtactagtaaattttataacaatttttttttttgatttcatacccattttatggagtgagaa  18675600                                                                                    <---------AHL20(2)                                                                                  --------->AHL20(2)                                                                              <---------AHL20(2)                                                                ------>ZmHOX2a(1) <---------AHL20(2)                                                               --------->TOE1(3)<---------AHL20(2)                                                               --------->TOE2(3)--------->AHL20(2)                                                             <---------YAB1   --------->AHL20(2)                               --------->YAB1              --------->YAB1   --------->AHL20(2)                               <--------ATHB1             <---------ATHB12  <---------AHL20(2)                              <---------ATHB12      <---------WRKY45 <---------AHL20(1)                              --------->ICU4        <---------WRKY12 --------->AHL20(1)                   --------->YAB1                   <---------WRKY38(1) --------->AHL20(2) ---------At5g28300<---------ICU4                  --------->WRKY18(1)  <---------AHL20(2) ----------GT1    --------->ICU4         <----------DOF2--------->WOX13(1)<---------AHL20(2) ---->ARR14(2) <---------AHL20(2)      ---------->ID1   --------->YAB1--------->AHL20(2) -----ARR14(2) --------->AHL20(2)     <-----------GT1  --------->MYB46(3) --------->AHL20(2)   ttcacagtctaatttgtttaattatgttctcaatgatttttttcttttttttggtcaacaatcatccttaatatatatatatatatatatatgtgaagtt  18675700                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                             <---------AHL20(1)                                                             <---------AHL20(2)                                                             --------->AHL20(2)                                                             --------->AHL20(1)                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                        <---------AHL20(1)                                                        <---------AHL20(2)                                                        --------->AHL20(2)       ------>ZmHOX2a(1)                                                     --------->AHL20(2)      <-----------GT1                                                     <---------AHL20(2)  --------->ARR11(3)                  --------->ALFIN1                  --------->AHL20(2)   <---------ARR11(3)            <------NtERF2                     ------>ZmHOX2a(1)   <---------MYB46(3)  --------->AHL20(2)              <---------MYB52(1)<---------AHL20(2) <---------TOE2(3)      -------   gaaataatatgggccgagaggtttgggcctggttctgtttttttgttcctactattaatttaatttatttgttgagatttttcctcgttttttaaaaaac  18675800                                                          <---------ANAC55(1)                                                          <---------ANAC58                                                          <---------ANAC58                                                          --------->ANAC55(2)                                                       <---------MYB52(1)                                                      <-------GAMYB                                                      <-----------HVH21                                                     --------->DEAR3(1)                                                     <---------MYB46(3)                                                    <------NtERF2                                                   --------->ABI4(1)                                                   ------>NtERF2                                                  --------->RRTF1(3)                                                  --------->RAP2.3(3)                                                  --------->RAP2.3(2)                                                  <---------DEAR3(1)                    ----------->GT1         ------->TEIL                             --------->DEAR3(1)                   <---------TOE2(3)         --------->ARR14(2)                      --------->ERF1                    <---------At4g35610         <---------ARR14(2)                      --------->ATERF1(1)             <---------WRKY12         <---------ARR11(1)                      --------->RAP2.3(1)             <---------WRKY38(1)         --------->GLK1(2)                       --------->ORA47(2)             <<<<<<<<<<WRKY11        <---------ARR14(1)                       --------->RRTF1(1)             <<<<<<<<<<WRKY6        <---------CCA1(2)      <-----------GT1   --------->DEAR4(2)        <---------MYB52(1) <------      <---------ANAC58         *TSS            --------->ANAC46   <---------GLK1(2)--------->At4g35610      <---------ANAC58  <-----------GT1   --------->YAB1  <---------ANAC46<----------DOF2<------ZmHOX2a(1) -->MYB52(1)        <----------DOF2      <------ZmHOX2a(2)<---------ANAC55(2)  <-----------HVH21   cgatgagagcgtatctatatttcttttttcatttttctctccgatcaaaacgccgccgttgcgtctctgattcttcctttgggtcaactgaggaaaaaac  18675900                                                                     <---------MYB52(1)                                                                    --------->LBD16                                                                   --------->LBD16                                                                   --------->ANAC46                                                                 <---------LBD16                                                  <---------ANAC58--------->LBD16              ------                                    <----------DOF2          <----------DOF2                <--------   ------>ZmHOX2a(1)  <---------ANAC58            <---------ANAC58<---------LBD16     --------->LBD16 -----GT1             <---------ANAC58  <-----------GT1<-----------GT1         <---------GLK1(2)-----   ccttcctatgaagaacaacaattggcttcacactctctcttttctcaattttgcttcttacttctttccccggtactcactgattctccccaattttcct  18676000                                                                   ----------->HVH21                                                                   ----------->TGA1                                                                 <---------AtLEC2                   -                                                                 <---------ANAC58                   <                                                                 <---------ANAC58                  <-                                                          ------>NtERF2                            <-                                                          --------->LBD16                       <----        --------->ZAT18                                  --------->ANAC58                     <------     <---------ANAC58<---------ANAC58                    --------->ANAC58                    ------>ZmHOX2a(1)     <---------ANAC58<---------ANAC58      <---------YAB1--------->ANAC46                    <------- --->TOE2(3)<---------MYB52(1)       <------MYB46(1)    <---------LBD16         <---------MYB52(1) <- ---GT1 <---------ZAT18              <------MYB83<-----------RAV1(1)  <---------bZIP60(2)    -------- ->ZmHOX2a(1)--------->STY1(1)      --------->MYB59   --------->PCF5  <---------ANAC46      <--------   tatttcgtcgtgcccttagggtttcttacatcgaaagtttggtttttgattatgttgtcccgccattgcatgacgttgttctgttttgttctgtcctaat  18676100 -------------->AGL15 ---------------AGL15 --------ANAC58 --------ANAC46 -----WOX13(1)                                                                              <-------- ---ICU4                                                                   --------->HSFB2a(2) --YAB1                                                                    <---------HSFB2a(2) --------ANAC58   --------->YAB1                             <---------ANAC46    <---------WOX13(1) < ->ICU4          <---------KAN4(1)               --------->At4g35610     ------>ZmHOX2a(1)  --------- -MYB59  <---------GLK1(1)                       <---------At4g35610------>ZmHOX2a(2)       <--------   tgcttatttgggtttctgaataatcttcaattggagttttttttttgttcaagctgaagagtttcggtgatcgtcctctagagattgatgctaatttttt  18676200                            <---------ALFIN1                           <---------ZAT18                           --------->DEAR3(1)                         ------>NtERF2                         --------->ABI4(1)                        --------->DEAR3(1)                        ------->GAMYB                        --------->DREB2C(2)                       --------->ORA47(2)                       --------->ATERF1(1)                       --------->MYB46(3)                       --------->DEAR3(2)               >>>>>>>>>ARR2                       <------NtERF2                    >>>>>>>>>ARR1                       --------->DEAR4(2)              --------->ATHB12                      ------>NtERF2                   <---------YAB1 --------->YAB1       <---------ATERF1(1)             --------->ICU4 <---------ICU4      --------->DEAR3(1)             <---------ICU4 -ICU4            --------->ANAC58                  --------->YAB1                        --------->ANAC46 ---------ATHB12  --------->ANAC46                 <---------YAB1                         --------->ANAC58 >AHL20(2)        --------->ANAC58                 --------->ICU4                         --------->ANAC58 -AHL20(2)      ---------->DOF2           <----------DOF2<---------WOX13(1)      <----------DOF2  <--   caaacattacaaagtttccaaagccaccgcccacttgaaacattcttttggtgattatgattgtttatatcgatttagcattactttacaataagcaagt  18676300  Previous    Next  AGI:  At1g50410.1    Description:  SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein. similar to EDA16 (embryo sac development arrest 16) [Arabidopsis thaliana] (TAIR:AT1G61140.3); similar to EDA16 (embryo sac development arrest 16), ATP binding / DNA binding / helicase/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G61140.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20010.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82215.1); similar to H0323C08.5 [Oryza sativa (indica culti Range:  from: 18675831    to: 18681224    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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