Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     ------>ZmHOX2a(2)                  --------->CCA1(2)                  <------ZmHOX2a(2)                 <---------ARR11(3)                 --------->ARR11(3)                                                                xx                 --------->ARR14(2)                                                            <-----                 <---------AGP1                                                              xxxxxxxx                 --------->AGP1<---------MYB52(1)                                            xxxxxxxx                 <---------ARR14(2)                                    <---------ANAC58     ---------                 <-----------ARR10                                     <---------ANAC58    <xxxxxxxxx                 <---------ARR14(3)                                  --------->LBD16   <---------At4g35610                 --------->ARR14(3)       --------->GLK1(2)         --------->ANAC46  <xxxxxxxxxxxxxx        --------->HSFB2a(2)   <-------GAMYB                        <---------LBD16  <xxxxxxxxxxxxxxxx     <-----------GT1          <---------RAP2.6(3)                ------->TEIL  <----------DOF2xxxxxxx ----GT1<---------HSFB2a(2) ---------->ID1--------->ICU4   --------->LBD16 ---------->ID1----------->GT1   attctttttactggaacaagatctgaacttgccgttatactgcaattctgaattgaaaaccccgatgtacccggcttgtcactttgttgagcagttataa  18648400                          ------>NtERF2                       --------->HSFB2a(2)                       <---------ANAC58                       <---------HSFB2a(2)                       <---------ANAC58                    <---------SPL7                   <---------ANAC58 xxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ------GT1         <---------ANAC58 xxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxx>smallRNA(i2)                                                                <------- >YAB1    ------>ZmHOX2a(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                          ----------- xxxxxxxxxxxxxxsmallRNA(fl3) <------NtERF2                                           ------>NtERF2 xxxxxxxxxxsmallRNA(fl3)--------->LBD16                                          --------->ANAC46   < xsmallRNA(si3)<---------MYB52(1)                              <---------WRKY18(1)   --------->ABI4(2) xxxxxxxxx>smallRNA(i)<---------LBD16       ----------->GT1   ----------->HVH21xxxxxxxxxxxxxxxxxxxxxx   cattgctctgtccttccattggcttccgggcctcaattcgacagttttgaaaaattgctgaggcatgaccgaaaatgaagtctacggtgcccgtgatgaa  18648500      --------->At5g28300                       --------->ANAC58     ----------->GT1                            --------->ANAC58                       --------->At4g35610    --------->ANAC58                       <---------YAB1            <---------At4g35610    --------->ANAC58                       --------->LBD16           --------->At4g35610 ----------->HVH21                         ------>ZmHOX2a(1)      <---------MYB52(1)   <---------At4g35610 --REM1(1)                             --------->ARR14(2)     ------>NtERF2           --------->DEAR3(1) >HVH21                                <---------ARR14(2)    <---------ALFIN1      <---------ALFIN1 -----------HVH21                     <---------GLK1(1)   --------->ANAC46       <-----------HVH21 x>smallRNA(l2)      <---------YAB1   --------->GLK1(1)   ----------->HVH21 <---------ZAT14   gcagtcacggtaaaattgtctgtatgaatgggcatagagggtatcctgataagcatcaatgcgacaccgatagatgactacagcatcaccgctcactcga  18648600                                                   ------>ZmHOX2a(1)                                                  --------->TOE1(2)                                                 ----------->RAV1(2)                                                 ------>ZmHOX2a(2)                                                --------->GLK1(2)                                                <------ZmHOX2a(2)                                               --------->ARR14(2)                                               <---------ARR14(2)                                           ---------->DOF2                   <---------ANAC58    ------->TEIL--------->LBD16               <---------MYB52(1)      --------->ARR14(2)               <----------DOF2  --------->ZAT14<---------ARR11(3)           ---------->ID1       <---------ZAT14<---------ARR14(3)       ----------->RAV1(2)   <---------ANAC58  --------->ARR14(3)     ------->GAMYB <---------ANAC58   <---------CCA1(2)      ------->TEIL    --------->MYB46(3)       <---------ANAC46  <---------GLK1(2)  =================RAV       <---------ANAC58  --------->ARR11(3)                <------NtERF2  ----------->RAV1(1)    <-----------RAV1(2) ----------->ARR10               <---------MYB46(3)   agagcaacagcctgtccctttgctggtccagccgtgttctgtatccaaagatcctgggccatgaaccaatttccatcgatggctgcaagtttataaaaca  18648700                                 >>>>>>>>>>AtTINY2                                 <---------ETT(1)                          ------>MYB83                             <---------ANAC58     <----------DOF2     <-----------GT1                       <---------AHL20(2)         <---------DAG2  --------->YAB1                      --------->AHL20(2)      --------->LBD16    <---------YAB1           <---------ANAC46                    --------->YAB1----------->RAV1(1)           --------->AHL20(2) <---------YAB1 <--                   <---------ATHB51         <---------LBD16<---------WOX13(1) --------->YAB1     ----         <---------TOE2(3)   <---------ANAC58<---------LBD16 --------->YAB1------>MYB46(1)--------->TOE2(3)   tatgtgagtttaagaaatacaataataaatagcttccgacatataatccgggctttatgtgaatgatataataaaccaaatcgtgatcaatgccttagat  18648800                                                                       ---------->DOF2                                                                 <-----------------------TaNAC69(2)                                                            <---------AHL20(2)                                     ----------->GT1       --------->AHL20(1)         <----------DOF2           <------------CBF        <---------AHL20(1)   <------MYB46(1)        <---------ARR11(3)               <---------AHL20(2)   <------MYB83         <---------TOE2(3)  <---------ICU4  --------->AHL20(2) -------AHL20(2)        <---------YAB1    --------->ICU4  --------->YAB1          --------->MYB52(1) ----->AHL20(2)       *TSS--------->ARR11(3)  <-----------GT1--------->YAB1--------->TOE1(3)       <-   ttatttggtttcttttcaattcacttaagatagtccatattgtaatttttacagaaacaaatataatgacattaaaagcttaactatcgaagagcattta  18648900                                                                 <---------YAB1                                                               --------->YAB1                                                               <---------ICU4                                                              --------->ICU4                                                            --------->YAB1                              <------MYB83                  --------->ATHB51       <---------YAB1         <------MYB46(1)               <--------HAHB4      <---------AHL20(2)  <---------ARR14(2)                <--------ATHB1      --------->AHL20(2)  --------->ARR14(2)                <---------ICU4  ----------->GT1--------->TOE2(3)                         <---------ATHB12 <---------AHL20(1)  --------->ATHB12   <-----------GT1                       --------->AHL20(2)                <------- <---------YAB1<-------TEIL   ----------->GT1              --------->ICU4   --------->AHL20(1)      < --------At4g35610  ---------->DOF2  <-----------GT1       <---------ATHB51 <---------ARR11(3)-------   cagatgattaaaatagtttcattaaaccgatttggtttaatacggtttagtttttcattcaataattatgtttaccaatatatatcaaacatttagtctt  18649000                                                                <---------AHL20(2)                                                         <---------AHL20(1)                                                         --------->AHL20(2)                                                         <---------AHL20(2)     <-----------HVH21                          <---------CCA1(1)    ------>ZmHOX2a(1)                           <---------RVE1(1)   --------------->AGL15                        --------->GLK1(1)   <---------------AGL15                       <---------ARR14(2)  ----------------->AGL1            <----------DOF2 <---------AHL20(1) --ZAT6                          <---------ARR11(3) --------->AHL20(2)             ----------->GT1 -----------GT1                  --------->ARR11(3) <---------AHL20(2)     --------->At4g35610 -->TOE2(3)              --------->AHL20(2)    --------->ARR14(2)       <------ZmHOX2a(2)       -----   aatttcctgttagagcaaacaaacaaattcaataacatcttttccatcggatattttattttattttttattcgatcaactcaagtagttacaatgaagt  18649100                                              <---------AHL20(2)                                              --------->AHL20(2)                                              --------->ATHB51                                              --------->ATHB12                                             --------->ICU4                                  --------->AHL20(2)  ---------->DOF2                               -                            --------->YAB1<------ZmHOX2a(1)            <-----------RAV1(1)       <--- ---->ALFIN1  <---------------AtSPL8    <---------TOE2(3)             ------->TEIL           <-------   gtttgtgtaatgtaatgggggacatagtaatgaaaatgaaataaggaattatttggcaaagcatgcttagtgtatgttggattatttcttagttgatatt  18649200                                                                      <---------ARR11(3)                  <---------DAG2                                    --------->ANAC58           <-----------RAV1(1)                                      --------->ANAC58         <----------DOF2                                     <---------AHL20(2)   <---------ARR14(2)                                    <---------AHL20(1)   <-----------ARR10           --------->YAB1            <---------AHL20(2)   --------->ARR14(2)       <---------ICU4               --------->AHL20(1)   <---------ARR11(3)       --------->YAB1           <---------AHL20(2)   --------->ARR11(3)      --------->ICU4            --------->AHL20(2) -------->ANAC55(2)        <---------ATHB12       <----------DOF2   --------->ANAC46       --------->LBD16 ------AHL20(2)   <----------DOF2       --------->REM1(1)--------->AHL20(2)               --------->LBD16 --------AGL15<---------ZAT18 <---------YAB1   ---------->ID1<---------ICU4<---------AHL20(2)     ---   ttaagtatctcctttgtgggctttttccaattatcatgggctacattttgttcttttaattaattaatgcaagacatttttttttaaaaaccccgagaaa  18649300  Previous    Next  AGI:  At1g50330.1    Description:  pseudogene, similar to pectin methylesterase, blastp match of 57% identity and 9.8e-69 P-value to GP|20269071|emb|CAD29733.1||AJ441325 pectin methylesterase {Sesbania rostrata} Range:  from: 18647985    to: 18648822    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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