Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                               --------->ARR11(3)                                             <---------ARR11(3)                                           <---------TOE2(3)        --------->At4g35610                <---------YAB1                      --------->ZAT2        <---------At4g35610       --------->O2--------->GLK1(1)                <---------At4g35610       ----------->RAV1(1)        <---------O2<---------GLK1(1)      --------->TOE2(3)     --------->At4g35610          --------->TGA1a     <---------MYB52(1)       --------->At4g35610     --------->ZAT14              <---------TGA1a <-----------------AGL1       <---------ZAT2      -- --HSFB2a(2)   =============================bZIP_DOF <-------GAMYB<---------GLK1(2)               --- ->HSFB2a(2)   ---------->DOF2    ===========================MYC_MYB --------->TOE1(3)    -----------   aaaacagagcagcagtacaaagtcgagacgtttgagacgtcgattaagatttctccgttgtggtaacagaaccttgaaaccagctcaaacccatctggtc  18629700           <---------YAB1          --------->TOE2(3)         --------->YAB1         <---------ICU4        <---------ATHB12                                                         --------->ANAC58        --------->ICU4                                                           --------->ANAC58 ------>ZmHOX2a(1)                                                            ------>ZmHOX2a(1) --------->HSFB2a(2)                    <---------ANAC58                     --------->TOE2(3) <----- <---------HSFB2a(2)               <----------DOF2                      --------->At4g35610--------->ZAT14 --------->LBD16             <---------GLK1(2)                        <---------ICU4       <---------ZAT14 --------->RAV1(2)         <---------YAB1            <----------DOF2  --------->YAB1    --------->LBD16 --->ZmHOX2a(1)            --------->ICU4    <-----------GT1         <---------ATHB12  --------->HSFB2a(2) >RAV1(2)--------->ATHB12--------->YAB1 <---------ANAC58          <---------AHL20(2)   <---------HSFB2a(2)   ctcctggaaaatcattaatctcgatagtgatgattctctttttcttgtttctcttctttttgctctgtttaatcatcttcctcaagcttccagagtactt  18629800                                                                                              <------                                                                                              -------                                                                                              <------                                                                                             --------                                                                                             --------                                                                                           <---------                                                                                         <----------DOF2                                                                                    <------MYB83                   --------->ZAT14                                                  <------MYB46(1)                   <---------ZAT18                                                 --------->MYB59          --------->HSFB2a(2)                                                      <---------AtMYB61   <-----------GT1 <---------ZAT14               <---------ICU4               <---------TOE1(3)   <-- -----DOF2<---------HSFB2a(2)                    --------->YAB1               <---------TOE2(3) -----   tgaaatcacgttctaaaacagagcacatagagaattaagaacagagcataatcaagactgtggttttttgaactgagttttaggtttggttctttacctg  18629900                                         ================HOX2a_HOX2a                                         ------>ZmHOX2a(2)   <------ZmHOX2a(1)                    <------ZmHOX2a(2)   =====================================HOX2a_HOX2a <---------TOE2(3)                      =================HOX2a_HOX2a ---MYB59                              --------->ARR11(3) -------->AGL15                  ------>ZmHOX2a(2) ---------AGL15                  ========================HOX2a_HOX2a ->ANAC55(2)                   <---------ARR11(3) --------->AGL1                --------->ARR11(3) --GT1  --------->GLK1(2)   <---------WOX13(1)    <------ZmHOX2a(1)                   --------->ARR11(3) -------WOX13(1)         <---------YAB1<---------ARR11(3)                             <---------ARR11(3) ---->ATHB12             <---------TOE2(3)<-------GAMYB                  <------ZmHOX2a(1)      <----   attgaggaagaatgtgtattggccattgagattgatcttaagatcgttgagaggagacatttcatagaacaactaggaagcctactgaggtcttgtgact  18630000                                                                 <---------ZAT18                                                                 --------->ZAT18                                                               <---------ZAT18                                                               --------->ZAT18                                                               *TSS                                                         -------->HAHB4                                                         --------->YAB1                                                        <---------YAB1                                                      <--------HAHB4                                                      <---------ICU4         <-----------GT1                              --------->YAB1 <-------MYC4     <----------DOF2                                  <--------ATHB1 <-------MYC2     <---------DAG2               <---------ANAC46    --------->ATHB51       --------->ATHB12<-------   <---------At4g35610            <---------ANAC58   <---------ATHB51<-------MYC3     <-----------TBP <---------ZAT18                  <---------ANAC58   --------->ICU4  ------->MYC3   <-----------TBP ------DOF2          ------>ZmHOX2a(1)               <---------ATHB12------->MYC2----------->GT1   ttgtgagcttttttctgttcttcctctgtgtttttttcttggattgaatagagcaataattatagtgggcacatgtaaatgagtggatatatatagtgtt  18630100                                       <---------AHL20(2)                                     ----------->TBP                                    <---------AHL20(1)                      <----------ID1         --                ----------->RAV1(2) --------->AHL20(1)                  --------->ANAC58      <------      <----------DOF2     --------->ZAT18      ------->TEIL             --------->ANAC58<-----------RAV1(1)    ---------->ID1----------->GT1  --------->AHL20(2)                 <--------P---------->DOF2  ---- --ZAT6     <-----------GT1      --------->AHL20(2)                <---------ZAT6      <---------TOE2(3)   tcatttggctttatttacacctgtaaaatgcacaaaaatatataaactgaatctaagtttgagaaattagaggtaagtaagacaaagtttatgttgagct  18630200          ----------->RAV1(1)       <-----------GT1  --------->YAB1                                     <----------DOF2 <---------YAB1                                --------->ATHB12 ------->YAB1                             --------->AHL20(2)          <-----------RAV1(1) ---At4g35610                          <---------------AGL15   <---------ANAC58           <---------ANAC46 ------->GT1                          ----------------->AGL3   <---------ANAC58  ---------->DOF2    <   agtataataaaaccacataaattccaaagtctctcaaattcccataaattgatttcttttgtttgtcttgttatgttgtttttaaaagaatgctgtagaa  18630300                                                 <---------ICU4                                                 --------->ATHB51                                                 <---------AHL20(2)                                                 --------->AHL20(2)                                                <---------YAB1                                                --------->ICU4                                              <---------ICU4                                              --------->YAB1                                             --------->ICU4                      <------ZmHOX2a(1)    --------->YAB1                <---------HSFB2a(2)     --------->YAB1             --------->ARR14(2)             <----------DOF2            <---------ICU4          --------->ANAC55(2)          --------->ARR11(3)           <---------ATHB51         <---------ANAC55(2)          <---------ARR11(3)      <---------TOE2(3)<---------YAB1  <---------ARR14(2)         <---------CCA1(2)   <----------DOF2 <---------YAB1 <-----------HVH21       ------>ZmHOX2a(1)<---------WOX13(1)<---------YAB1 <---------At5g28300 ---------YAB1  --------->HSFB2a(2)    --------->ICU4   <-----------GT1   <-------TEIL     <---------   ttttgattcctatatctttgagaaggattgacttttaagaaattatgataattatttttcactgtcaagtattcggttcatattgtacatgagcttttca  18630400                                                                                                  ---                                                                                                 ----                                                   <---------AHL20(2)                            <---                                                   --------->AHL20(2)                           -----                                               <---------AHL20(2)               --------->At5g28300                                               --------->AHL20(1)              ----------->GT1  <----                                               --------->AHL20(2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                              <---------AHL20(2)             <-------TEIL xxxxxxxxxxx                                              --------->AHL20(2)        ----------->RAV1(1)  --------     --------->YAB1              ---------->DOF2  --------->AHL20(2)   --------->ANAC46--------->TOE2(3) -DOF2    ------->TEIL ---------->DOF2--------->ZAT18                --------->ANAC46xxxxxxxxxxxxxxxx   aactcaaacatgaatatcaaaacttcaaagtgtttgaaaggtcactaaaaaaattaatacagcattactaaacacaacatacagtaaaacctctataaat  18630500                                                                                        ------>ZmHOX2a(1)                                                                                       <---------MYB59                                                                    --------->AHL20(2) <-------------                                                                    <---------AHL20(2) --------------                                                                   --------->AHL20(2) <--------------   <-----------RAV1(1)                                             <---------AHL20(2) ---------------  <---------TOE2(3)                                             <---------AHL20(2)    <-------------- <---------ICU4                     ----------->GT1            --------->ICU4         --------------- --------->YAB1           --------->AHL20(2)                 <---------ICU4           --------------- ------>YAB1              <---------AHL20(2)             --------->AHL20(2)           --------------- ----->AHL20(2)          --------->AHL20(2)              <---------AHL20(2)           <-------------- ------AHL20(2)          <---------AHL20(2)             --------->AHL20(2)          <-----------GT1 ---->AHL20(2)       --------->AHL20(1)                 <---------AHL20(2)       <---------ARR11(3) -----AHL20(2)       --------->AHL20(2)              --------->AHL20(2)<---------AHL20(2)     ------- xxxxxxxxxxxx>smallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <---------GLK1(2)  < ->AHL20(2)          <---------AHL20(2)      <---------AHL20(2)--------->AHL20(2)--------->ARR11(3) < xxxxx>smallRNA(se3)--------->AHL20(2)   <---------AHL20(2)<---------TOE2(3)    <---------RVE1(1)<---   taataatgttgggactacaaaattttattaatttagagaggttttaatttatcgataaattaatatttattaatttatagagagattttcctaatttagt  18630600  Previous    Next  AGI:  At1g50280.1    Description:  phototropic-responsive NPH3 family protein. similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT3G19850.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15402.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB/POZ fold; (InterPro:IPR011333) Range:  from: 18627366    to: 18630063    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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