Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                     <-                                                                                                   --                                                                                                   --                                                                                                   <-                                                                                                   --                                                                                                   <-                                                                     <---------AtLEC2             <--                                       <-----------GT1               <---------ANAC58             <--                              --------->YAB1                         <---------ANAC58             ---         <---------AHL20(2)--------->WOX13(1)                       <<<<<<<<<<ABI3              <----        --------->AHL20(2)<---------AHL20(2)                        <<<<<<<<<<FUS3           --------   ----------->RAV1(1)    --------->AHL20(2)                  --------->AHL20(2)         <-----------GT1 --------->ZAT18         --------->AHL20(2)                --------->YAB1          --------->YAB1 --- ----->DOF2   <---------AHL20(2)     <----------DOF2      <---------YAB1    --------->WOX13(1)  -----   aagagcaccattttatattttttgcaaattaatcaaaaactttacaacttcttagctattttcataaatttgcatggtcattcaatggtatttactaata  18419700   <---------AHL20(2)  <---------AHL20(2)  --------->AHL20(2) -------HAHB4 ------>HAHB4 ------->YAB1 -------ATHB1 ------->ATHB51 --------ICU4 -------YAB1 -------ATHB51                                                   <----------DOF2 ------>ICU4                     >>>>>>>>>WRKY18              ---------->ID1            <----------DOF2 -----ICU4                       ------------>AtMYB77        <-----------GT1        --------->ZAT14 ->YAB1                   <---------AHL20(2)  <---------At4g35610------>ZmHOX2a(1)  <---------ZAT14 ------>AHL20(2)   ------->TEIL ----------->HVH21           <-----------GT1     <-----------GT1   <-- ---->YAB1      --------->MYB46(3)   <-------GAMYB         <---------AHL20(2)--------->YAB1      <---   ataattaaatatgtctgaacgaacatatttttttttgacagttactacagctatttcatattttatcctttttatacaaaaatcacttcactttctaatt  18419800                                      <-----------GT1                                    <---------AHL20(2)                                   --------->YAB1                                <---------AHL20(1)                                <---------AHL20(2)                                --------->AHL20(2)                 --------->ZAT14--------->YAB1             <-----------GT1    <---------ICU4                                 <---------YAB1    <---------HSFB2a(2)        <---------ATHB12                               <---------GLK1(2)    --------->HSFB2a(2)        --------->ICU4                     <---------ZAT14  --------->AtLEC2           --------->YAB1                       --------->ZAT14 -------At5g28300<---------ZAT14<--------ATHB1         --------->AHL20(2)--------->ZAT6 --------GT1--------->AHL20(2) <---------ATHB51 --------->TOE2(3) <---------ZAT18   taccttgcagaaaatttactacagtacatactaataattttaacaaattttcttaaataaaacatcactacacttacactgattcttgtttttctaatct  18419900                                                                                        <---------CCA1(1)                                                                                        <---------RVE1(1)                                                                            <---------AHL20(2)                                      <---------AHL20(2)                    --------->AHL20(1)                                    <---------AHL20(2)                      --------->AHL20(2)                                   --------->AHL20(1)                  --------->AHL20(1)                                   <---------AHL20(1)                  --------->AHL20(2)         ---              <---------ICU4  <-------GAMYB                       --------->AHL20(1)   <---------AHL20(1)             ------>ZmHOX2a(1)--------->At5g28300                 <---------AHL20(1)   --------->ARR11(3)       <-----------GT1       ----------->GT1                      <---------AHL20(2)   <---------ARR11(3)      --------->ICU4      ------------>MYB.PH3(1)                 --------->AHL20(2) ----------->ARR10    <---------ICU4       <---------ARR14(2)                      <---------ATHB12----------->GT1  --- --------->YAB1          --------->ARR14(2)            <----------DOF2 <---------AHL20(2)  <---------   cattagtaattactcctcattagtctgaatacggttatatatttttgagcacaaatacttttgcccaataaaataaaataaaatggtaagatatttccca  18420000                                            ----------->GT1                                      <---                                            <---------ZAT6                                       ----                                        --------->ZAT14                                          <---                               --------->ANAC46                                                  <---                               --------->ANAC58                                                 <----                     --------->PCF2 --------->ANAC58            --------->GLK1(1)               -----  <---------CCA1(2)----------->HVH21--------->ANAC46            <---------GLK1(1)          <---------TOE1(3) ------>ANAC58   --------->ALFIN1   --------->ANAC58     --------->At4g35610          <----------DOF2 ------>ANAC58 --------->ALFIN1--------->ANAC58      --------->MYB52(1)          ---------->DOF2<---- --GT1<---------AHL20(2)--------->ANAC46<---------ZAT14--------->MYB46(3) <-----------GT1  <---------TOE2(3)   acgcatattttatacaagtgtgtgacccacaacaagacacactacagtgtaaatccaacggctgagatttctcaaattaccatcaaagcttttagggttt  18420100       ------>MYB46(1)       ------>MYB83    --------->HSFB2a(1)                                                                         -----    <---------HSFB2a(1)                                                                         ----- ---MYB46(1)                                                                                  <------ ------->GT1                                                                                  ------- ------ANAC46                                                                        <-----------HVH21 ---MYB83  <-----------TBP                      *TSS                               --------->DAG2 -----MYB46(3)                                 <----------DOF2                 --------->YAB1 ------>ZmHOX2a(1) ---->MYB46(2) <---------AHL20(2)            ------>ZmHOX2a(1)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -----AtMYB61----------->TBP            <----------DOF2              <---------At4g35610      -------   ggtgaaaccttccatatataaacactgaaacctccaagttgtctttcctctttgcagttttttttcatttgagcttctctctgataaggtcacttcctct  18420200                                          <---------ANAC58                                          <---------ANAC58                                       <---------MYB52(1)                                        <---                                      <-------GAMYB                                              <---                                     <---------MYB46(3)                                         <----                                     <---------DEAR3(2)                                         <----            --------->At4g35610     <---------DEAR3(1)                                        ------>NtERF2  <----------DOF2                  <---------MYB52(1)                                         ------- ------>HVH21                      <------NtERF2                                             -------- ---->WRKY12<---------At4g35610   <-----------HVH21                                          <------- ---At4g35610                    --------->DEAR3(1)                                         <-------- -->At4g35610     --------->ANAC46------------>AtMYB77                                <-----------GT1 ---->RAV1(2)  <---------WRKY38(1)------>NtERF2                                      <---------YAB1   gacccttttatctaagctcaacgctgcaactctcgccgtcggttacttccccattttccttccttcttccgattcaaagactcaatttttattctccggc  18420300      <-------TEIL    --------->ARR14(2)    <---------ARR14(2)   <------ZmHOX2a(1) <---------TOE2(3) <---------TOE1(3)         <----------DOF2 ----GAMYB                 <---------DAG2 -------DOF2        --------->RVE1(1)       <---------At4g35610                          <---------WOX13(1) -----DEAR3(1)     --------->ARR11(3)       <---------ZAT2                    <------MYB83        --- -----ANAC46       --------->GLK1(2)        --------->At4g35610               <---------ANAC55(2)<--- -->LBD16          <---------ARR11(3)--------->ATHB12                         <------MYB46(1) ------- ->ANAC46         --------->RVE1(1) <---------YAB1                            ----------->GT1 <------ --DEAR3(1)   ------>ZmHOX2a(1)  <----------DOF2                              --------->ANAC55(2)---- -LBD16  <---------At4g35610  <---------ARR11(3)          <------ZmHOX2a(1)  --------->MYB59 <-------   gttgaggattcatctcctaaaaatctctgctttatcttttgatttgagctgatttggagaggagaagaagatagatagataggtaattcggattgatatc  18420400                                                                                             --------                                                                                           <---------At4g35610                                                                                           --------->At4g35610                                                                                           ----------                                                                                        --------->At4g35610                                                                                        --------->ATERF1(1)                                                                                        <------NtERF2                                                                                        <---------At4g35610                                                                                        <---------LBD16                                                                                     <-------GAMYB                                                                                     --------->ZAT2                                                                                     <---------ZAT2                                                                                     --------->At4g35610                                                                                     <---------At4g35610                                                                                    <---------RRTF1(1)                                                                                    ------>NtERF2                                                                                    <---------ATERF1(1)                                                                                    <---------MYB46(3)                                                                                    <---------RAP2.6(1)                                                                                    <---------RAP2.3(1)                                                                                    <---------ERF1                                                                                   <---------RAP2.6(2)                                                                                   <---------ATERF1(2)                                                                                   <---------DEAR3(1)                                                                                   --------->ATERF1(2)                                                                                  <------NtERF2                                                                                 ------>NtERF2                                                                                 <---------ATERF1(1)                                                                                 <---------RAP2.6(1)                                                                                 <---------RAP2.3(1)                                                                                 <---------RRTF1(1)                                                                      ----------->RAV1(2)<---------RAP2.3(2)                                                                      <---------At4g35610<---------RAP2.6(2)                                                                      --------->At4g35610<---------ANAC46                                                                     ------>NtERF2<---------At4g35610                                                                    <---------ANAC46<---------DEAR3(2)                                                                    <---------RAP2.6(2)<---------ERF1                                                                    <---------DEAR3(1) <---------ATERF1(1)                                                                   <---------At4g35610<---------DEAR3(1)                                                                   <---------LBD16--------->ATERF1(1)                                                                  <-----------RAV1(1)--------->ATERF1(1)                                                                  ================RAV<------NtERF2                                                                  ===============================RAV                                                                ----------->RAV1(2)<---------RAP2.3(3)                                                                --------->At4g35610<---------RAP2.3(2)                                                                --------->ZAT2  <---------DEAR3(1)                                                                <---------At4g35610<---------ANAC46                                                                <---------ZAT2  <---------RAP2.3(2) -                                                               <-----------RAV1(1)------>NtERF2  <---                                                             <---------At4g35610<---------RRTF1(2)  <                                                 <---------At4g35610<---------RAP2.3(2)<---------RAP2.3(1)                      =============================RAV   --------->LBD16    <---------At4g35610  ----                      <-----------RAV1(2)    <---------ANAC46<---------ZAT2 --------->At4g35610  <--- -------->GT1  <-------TEIL                  <---------REM1(1) ===================RAV----------->RAV1(2) ------HSFB2a(2)  --------->At4g35610        --------->ALFIN1--------->ABI4(2) <---------LBD16   ---- -->ARR11(3) <---------GLK1(2)              ----------------------->TaNAC69(2) --------->At4g35610 -- ---ARR11(3) --------->ARR14(2)           <---------AtMYB61 --------->ALFIN1--------->ZAT2------>NtERF2 ----->HSFB2a(2)  <---------At4g35610  <---------ATHB12 <---------LBD16 ----------->HVH21<---------DEAR3(1) --GLK1(1)   <---------ARR14(2)        <-----------RAV1(1)--------->LBD16   <---------ZAT2<---------RAP2.3(1)   tcgaaaaatggctcagattcagcatcagggtcaaaatgccaatggtggtgtagctgttcccggtgctgctgcggctgaagctgcggcggctgcggctgga  18420500                  --------->ZAT2             <---------LBD16            --------->MYB52(1)         --------->ATERF1(1)         --------->ZAT2         <---------ZAT2         --------->At4g35610         <-------GAMYB         <---------At4g35610         <---------ATERF1(1)        <---------MYB46(3)        <---------ATERF1(1)        <---------RAP2.6(1)        <---------RRTF1(1)        <---------ERF1        <---------DEAR3(2)        ------>NtERF2        <---------RAP2.3(1)       <---------ANAC46       <---------RAP2.3(3)       --------->ATERF1(2)       <---------RAP2.3(2)       <---------RAP2.6(2)       <---------ATERF1(2)       <---------DEAR3(1)      --------->ATERF1(1)      <------NtERF2      --------->DREB2C(1)      --------->DEAR4(2)      <---------DREB2C(1)      <---------At4g35610      --------->RAP2.3(1)     <---------ORA47(2)     <---------ERF1     <---------RAP2.3(1)     <---------ATERF1(1)     <---------DEAR4(2)     ------>NtERF2<---------ZAT2     <---------RAP2.6(1)     <---------RRTF1(1)    --------->ATERF1(2)    <---------RAP2.3(2)    <---------RAP2.6(2)    <---------RAP2.3(3)    <---------ANAC46    <---------RRTF1(2)    <---------ATERF1(2)    <---------DEAR3(1)    --------->DEAR3(1)    <---------RRTF1(3)    --------->ALFIN1   <------NtERF2  --------->At4g35610   <---------ABI4(1)   ------>NtERF2  <---------At4g35610   --------->ATERF1(1)  <---------ATERF1(1)  <---------RAP2.6(1)  <---------RAP2.3(1)                                                              <---------At4g35610  <---------RRTF1(1)                                                               --------->At4g35610  ------>NtERF2  --------->ARR14(2)                                                --------->ZAT2   = <---------RRTF1(2)                                                         <---------GLK1(2)       < <---------RAP2.3(2)      <---------ZAT2                                 --------->ANAC55(2)        - <---------DEAR3(1)  <---------LBD16                      <---------HSFB2a(2)   <---------At5g28300 - ->ALFIN1<------NtERF2 --------->LBD16                   ------>ZmHOX2a(2)  --------->ARR14(2)      - ->RAV1(2)--------->ATERF1(1)                          --------->ARR11(3)<---------ANAC46        ---- -------->At4g35610--------->ATERF1(1)            <---------DREB2C(2)    <---------ANAC55(2)     ---- ------ZAT2 ------>NtERF2 --------->ZAT2          <---------DEAR4(1)   --------->MYB52(1)        <--- ---------LBD16  <-----------ARR10                <---------DEAR3(1)  ----------->HVH21         ----- ----->ZAT2----------->HVH21             <----------DOF2--------->At4g35610 <---------ARR14(2)<------ ------At4g35610 <---------ARR14(2)  --------->O2 <---------At1g77200 ----------->TGA1        <------ ----->At4g35610<------NtERF2        <---------O2--------->DDF1 ----------->HVH21  <---------ZAT2---- ------->ALFIN1--------->LBD16   --------->SPL7<-----------RAV1(1)   <-----------HVH21        <------   gctgcggcggcggctgccggagctgcgcagcaagggacgacgtctttatatgtcggtgatctggatgcgaccgtgacggattcacagctgtttgaggcgt  18420600  Previous    Next  AGI:  At1g49760.1    Description:  PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor. similar to PAB4 (POLY(A) BINDING PROTEIN 4), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT2G23350.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76464.1); similar to poly(A)-binding protein [Cucumis sativus] (GB:AAF63202.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65906.1); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta pl Range:  from: 18420148    to: 18423715    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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