AthaMap TU-Logo
Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                   --------->YAB1
                                  <-------TEIL
                                <---------ARR14(2)
                            --------->At4g35610
                            <---------At4g35610
   <---------ARR14(2)     ------>ZmHOX2a(2)
 --------->HSFC1(2)      <------ZmHOX2a(2)
 --------->HSFB2a(1)     --------->CCA1(2)                          --------->LBD16
 <---------HSFB2a(1)    --------->ARR11(3)                         <---------ANAC58
 <---------MYB46(3)     --------->AGP1                             <---------ANAC58
 <---------HSFC1(2)     <---------ARR11(3)                         <---------ANAC46
<---------TOE1(2)       --------->ARR14(2)                         <---------ANAC55(2)           ---
<---------TOE2(2)       <---------AGP1                             <---------ANAC55(1)           <--
------>ANAC46           <---------ARR14(2)                   <---------YAB1                     ----
------LBD16            <---------CCA1(2)             --------->TOE2(3)--------->REM1(2)        <----
-----HVH21            ----------->ARR10   <---------YAB1   --------->YAB1        <---------ARR11(3)
---DOF2        --------->YAB1   --------->ARR14(2)  --------->YAB1 --------->ANAC55(2)  <-----------GT1
 
acggaggttccaagtgtatcatattcagatctgcagattcatattccgattacaaacatcaattctaattccgtgaagaaacaatatcaattcacagatt  17522200
                                                                                              ------
                                                                                              ------
                                                                                             <<<<<<<
                                                                                     ---------------
                                                                                  <------ZmHOX2a(2)
                                                                <------ZmHOX2a(2) --------->CCA1(2)
                                                               <---------ARR11(3)<-----------ARR10
                               ---------->DOF2                 --------->ARR11(3)--------->ARR11(3)
                             --------->DOF5.7(2)            <---------HSFB2a(2)  <---------ARR14(2)
                           <---------ANAC46             <---------GLK1(2)        <---------ARR11(3)
                           <---------ANAC58           <---------YAB1             --------->ARR14(2)
------------>AGL15         ----------->GT1        --------->TOE1(3)              --------->AGP1
-------------AGL15         <---------ANAC58       --------->TOE2(3) ---------->DOF2------>ZmHOX2a(2)
------------->AGL1        <-----------------------TaNAC69(2)--------->HSFB2a(2)  <---------AGP1
---TEIL         --------->MYB46(3)         --------->YAB1--------->GLK1(2)---------->DOF2    <<<<<<<
 
caattttgggaaattctcaacaactaagtggcgttaaagcgcatactaataagccttaagattctagatcatgaagcgaaagaagatctaagtacaatct  17522300
                                  --------->HSFB2a(2)
                                  <---------HSFB2a(2)
   <------MYB46(1)              <------ZmHOX2a(2)
   <---------ANAC55(2)          ===================HOX2a_HOX2a
   <------MYB83                --------->AGP1                        <------NtERF2
  --------->MYB59         <-----------GT1    <---------ARR14(2)     --------->LBD16
  --------->MYB111(1) <---------ARR11(3)     --------->ARR14(2)    <---------ANAC58
--->YAB1         --------->MYB52(1)   ---------->DOF2              <---------ANAC46
--->TOE2(3)    <---------MYB52(2)----------->GT1                   <---------ANAC58     <------ZmHOX2a(1)
<<ARR1      --------->ZAT18    <---------ARR14(2)                 <---------LBD16  <-----------HVH21
>AtSPL8     <---------ZAT14    --------->ARR14(2)               --------->ALFIN1  <---------ANAC46
<<ARR2 <---------YAB1 --------->ARR11(3)    <------ZmHOX2a(1) --------->ALFIN1    --------->O2
 
tagattaggtatgagtaaactaacagatattacagatcgagaaaagaggatttgttcatacaagggagtggcggagtagtagaccgcgtgaggaccgaat  17522400
                                                                                            --------
                                                                                       <---------ATERF1(1)
                                                                                       ------>NtERF2
                                                                                      --------->DEAR3(1)
                                                                                    --------->LBD16
                                                                                    <---------ATERF1(1)
                                                                                    ------>NtERF2
                                                                                  <---------LBD16
                                                         --------->HSFB2a(2)    <---------ARR14(2)
                                                         <---------HSFB2a(2)   <---------ZAT2
                                                     <----------DOF2     --------->At4g35610========
                                      <---------ALFIN1   <---------------AtSPL8<---------At4g35610
                             <-----------HVH21<---------ALFIN1     <---------ATHB12<---------DEAR3(1)
                         --------->DAG2   <-----------HVH21      ------>MYB46(1)--------->ARR14(2)
          --------->At4g35610<-----------TGA1<---------ZAT18     ------>MYB83--------->REM1(1)
  --------->GLK1(2)     ---------->DOF2  --------->DEAR3(1)    <---------MYB59 --------->At4g35610
 <---------GLK1(2)----------->GT1    --------->MYB46(3)  --------------->AtSPL8--------->ZAT2
 
gtgagaatcgcacagttgaagaagtgaaaaagcgtcatcgtccaccgtcgcactctctttctggtaccaaatcagtagctacagctccggcgactcaaag  17522500
           ----------->GT1
         <---------At4g35610
         <---------ZAT2
     ----------->HVH21
     --------->ALFIN1
   --------->TGA1a
   <---------ANAC46
   <---------O2
   <---------TGA1a
   --------->O2
 ------>NtERF2                                   ---------->DOF2                               -----
--------->DEAR3(1)         >>>>>>>>>TBF1    ------>ZmHOX2a(2)                                 <-----
-->DOF2  --------->At4g35610               <---------GLK1(1)                             <------MYB83
=============bZIP_DOF   >>>>>>>>>TBF1      --------->GLK1(1)       *TSS                  <------MYB46(1)
 
acgacgacgtgaagctgtgaaattgaagaagaagaagaggtttctgatctctgaaagtctgaaactctgatggaatcaacaaaactcttagtgggttttg  17522600
                --------->At5g28300
               --------->RAP2.6(2)
               <---------ANAC46
       --------->ATHB12
      <---------MYB52(1)
      --------->ICU4
      <---------YAB1
     <-------GAMYB ---------->DOF2
    <---------MYB46(3)               <---------ANAC58     <-----------RAV1(1)          ----------->GT1
---->ATHB12    ----------->GT1       <---------ANAC58   <------------CBF          <----------DOF2
----YAB1<------------CBF      ------------>CBF       --------->YAB1             <---------YAB1   ---
 
atttgggtcgttattgggccgtaaaagtttttgttcaatttcttgagagctagttttcatattgttgcaccaaaatgagagttatctttgttgtaaaatg  17522700
                                                                                    <---------TOE2(3)
                                         ---------->DOF2                            <---------YAB1
                                    --------->AHL20(2)                         <---------ICU4
                                    <---------AHL20(2)                        --------->ICU4
                                    <---------AHL20(1)             <---------YAB1   <---------TOE1(3)
                            <---------At4g35610                   <-----------GT1 --------->YAB1
                   <---------AHL20(2)  <---------YAB1         <---------AHL20(2) <---------YAB1
           <---------ANAC46 --------->At4g35610           <---------ANAC55(2) <---------YAB1
------>At4g35610   <---------YAB1   --------->AHL20(1)  --------->AHL20(2) <---------YAB1      -----
 
aactgaatttagtgacttattttttattgtcatctgaaatttattaaaggagattgaaattacatatattttcattttttgattattatggttttcaaga  17522800
                                                                                                  <-
                                                                                                ----
                                                                                                <---
                                                <---------YAB1                                 <----
                                              <-----------GT1<---------TOE2(3)           --------->GLK1(2)
                                             --------->AHL20(2)                          <----------
       <---------YAB1    <---------AHL20(2)  <---------AHL20(2)                          --------->ARR11(3)
   ------->TEIL     <---------AHL20(2)       --------->AHL20(1)                          <---------ARR11(3)
---->YAB1     <<<<<<<<<GATA-1               --------->AHL20(2)       <-----------GT1    --------->RVE1(1)
 
ataatgtattttgatttatctattgaattttttttgagtaattcaaattttattattcaaagtttatgttattcactacttaacacctaaaaaatctaat  17522900
                            <---------AHL20(2)
                      <---------ANAC55(2)
--------YAB1          --------->ANAC46
----->YAB1            --------->ANAC55(1)          --------->YAB1
------ICU4            --------->ANAC55(2)         <---------AHL20(2)
-----ATHB12         <-----------GT1               <---------YAB1
-ARR10   --------->YAB1  ------->TEIL            --------->AHL20(2)       <---------ANAC46
 
catgtttcacaatgatatgttttatacgtatttttttggactacttaatgcatataatagttttttttttgtttatgcagtgttttgaaagagttaccca  17523000
                                                                                                ----
                                                                                              ------
                                                                                           ---------
                              --------->YAB1                                               <--------
                          <---------AHL20(2)                                             -----------
                         --------->AHL20(2) ------->TEIL                       >>>>>>>>>>>>>>>>>LFY
               <---------bZIP60(1)     --------->CCA1(2)            <------MYB83       --------->ZAT14
               <---------TGA2(1)      <---------ARR14(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)
               --------->bZIP60(1)    --------->ARR14(2)            <------MYB46(1)    <---------ZAT14
 
aaaacaaaaatcgttgttatgtcatcgatttattcatatcagatatgtatattggtttagttgatataagttggtttagtagaaccattgtatagtgtaa  17523100
<- Previous    Next ->

AGI:  At1g47640.1   
Description:  similar to unknown [Populus trichocarpa] (GB:ABK93176.1); contains domain PTHR12869 (PTHR12869)
Range:  from: 17520629    to: 17522568    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

    printer-friendly version