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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
YAB1
<-------
TEIL
<---------
ARR14(2)
--------->
At4g35610
<---------
At4g35610
<---------
ARR14(2)
------>
ZmHOX2a(2)
--------->
HSFC1(2)
<------
ZmHOX2a(2)
--------->
HSFB2a(1)
--------->
CCA1(2)
--------->
LBD16
<---------
HSFB2a(1)
--------->
ARR11(3)
<---------
ANAC58
<---------
MYB46(3)
--------->
AGP1
<---------
ANAC58
<---------
HSFC1(2)
<---------
ARR11(3)
<---------
ANAC46
<---------
TOE1(2)
--------->
ARR14(2)
<---------
ANAC55(2)
---
<---------
TOE2(2)
<---------
AGP1
<---------
ANAC55(1)
<--
------>
ANAC46
<---------
ARR14(2)
<---------
YAB1
----
------
LBD16
<---------
CCA1(2)
--------->
TOE2(3)
--------->
REM1(2)
<----
-----
HVH21
----------->
ARR10
<---------
YAB1
--------->
YAB1
<---------
ARR11(3)
---
DOF2
--------->
YAB1
--------->
ARR14(2)
--------->
YAB1
--------->
ANAC55(2)
<-----------
GT1
acggaggttccaagtgtatcatattcagat
ctgcagattcatattccgattacaaacatcaattctaattccgtgaagaaacaatatcaattcacagatt
17522200
------
------
<<<<<<<
---------------
<------
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
CCA1(2)
<---------
ARR11(3)
<-----------
ARR10
---------->
DOF2
--------->
ARR11(3)
--------->
ARR11(3)
--------->
DOF5.7(2)
<---------
HSFB2a(2)
<---------
ARR14(2)
<---------
ANAC46
<---------
GLK1(2)
<---------
ARR11(3)
<---------
ANAC58
<---------
YAB1
--------->
ARR14(2)
------------>
AGL15
----------->
GT1
--------->
TOE1(3)
--------->
AGP1
-------------
AGL15
<---------
ANAC58
--------->
TOE2(3)
---------->
DOF2
------>
ZmHOX2a(2)
------------->
AGL1
<-----------------------
TaNAC69(2)
--------->
HSFB2a(2)
<---------
AGP1
---
TEIL
--------->
MYB46(3)
--------->
YAB1
--------->
GLK1(2)
---------->
DOF2
<<<<<<<
caattttgggaaattctcaacaactaagtggcgttaaagcgcatactaataagccttaagattctagatcatgaagcgaaagaagatctaagtacaatct
17522300
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<------
MYB46(1)
<------
ZmHOX2a(2)
<---------
ANAC55(2)
===================
HOX2a_HOX2a
<------
MYB83
--------->
AGP1
<------
NtERF2
--------->
MYB59
<-----------
GT1
<---------
ARR14(2)
--------->
LBD16
--------->
MYB111(1)
<---------
ARR11(3)
--------->
ARR14(2)
<---------
ANAC58
--->
YAB1
--------->
MYB52(1)
---------->
DOF2
<---------
ANAC46
--->
TOE2(3)
<---------
MYB52(2)
----------->
GT1
<---------
ANAC58
<------
ZmHOX2a(1)
<<
ARR1
--------->
ZAT18
<---------
ARR14(2)
<---------
LBD16
<-----------
HVH21
>
AtSPL8
<---------
ZAT14
--------->
ARR14(2)
--------->
ALFIN1
<---------
ANAC46
<<
ARR2
<---------
YAB1
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
ALFIN1
--------->
O2
tagattaggtatgagtaaactaacagatattacagatcgagaaaagaggatttgttcatac
aagggagtggcggagtagtagaccgcgtgaggaccgaat
17522400
--------
<---------
ATERF1(1)
------>
NtERF2
--------->
DEAR3(1)
--------->
LBD16
<---------
ATERF1(1)
------>
NtERF2
<---------
LBD16
--------->
HSFB2a(2)
<---------
ARR14(2)
<---------
HSFB2a(2)
<---------
ZAT2
<----------
DOF2
--------->
At4g35610
========
<---------
ALFIN1
<---------------
AtSPL8
<---------
At4g35610
<-----------
HVH21
<---------
ALFIN1
<---------
ATHB12
<---------
DEAR3(1)
--------->
DAG2
<-----------
HVH21
------>
MYB46(1)
--------->
ARR14(2)
--------->
At4g35610
<-----------
TGA1
<---------
ZAT18
------>
MYB83
--------->
REM1(1)
--------->
GLK1(2)
---------->
DOF2
--------->
DEAR3(1)
<---------
MYB59
--------->
At4g35610
<---------
GLK1(2)
----------->
GT1
--------->
MYB46(3)
--------------->
AtSPL8
--------->
ZAT2
gtgagaatcgcacagttgaagaagtgaaaaagcgtcat
cgtccaccgtcgcactctctttctggtaccaaatcagtagctacagctccggcgactcaaag
17522500
----------->
GT1
<---------
At4g35610
<---------
ZAT2
----------->
HVH21
--------->
ALFIN1
--------->
TGA1a
<---------
ANAC46
<---------
O2
<---------
TGA1a
--------->
O2
------>
NtERF2
---------->
DOF2
-----
--------->
DEAR3(1)
>>>>>>>>>
TBF1
------>
ZmHOX2a(2)
<-----
-->
DOF2
--------->
At4g35610
<---------
GLK1(1)
<------
MYB83
=============
bZIP_DOF
>>>>>>>>>
TBF1
--------->
GLK1(1)
*
TSS
<------
MYB46(1)
acgacgacgtgaagctgtgaaattgaagaagaagaagaggtttctgatctctgaaagtctgaaactct
gatggaatcaacaaaactcttagtgggttttg
17522600
--------->
At5g28300
--------->
RAP2.6(2)
<---------
ANAC46
--------->
ATHB12
<---------
MYB52(1)
--------->
ICU4
<---------
YAB1
<-------
GAMYB
---------->
DOF2
<---------
MYB46(3)
<---------
ANAC58
<-----------
RAV1(1)
----------->
GT1
---->
ATHB12
----------->
GT1
<---------
ANAC58
<------------
CBF
<----------
DOF2
----
YAB1
<------------
CBF
------------>
CBF
--------->
YAB1
<---------
YAB1
---
atttgggtcgttattgggccgtaaaagtttttgttcaatttcttgagagctagttttcatattgttgcaccaaaatgagagttatctttgttgtaaaatg
17522700
<---------
TOE2(3)
---------->
DOF2
<---------
YAB1
--------->
AHL20(2)
<---------
ICU4
<---------
AHL20(2)
--------->
ICU4
<---------
AHL20(1)
<---------
YAB1
<---------
TOE1(3)
<---------
At4g35610
<-----------
GT1
--------->
YAB1
<---------
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
YAB1
<---------
ANAC46
--------->
At4g35610
<---------
ANAC55(2)
<---------
YAB1
------>
At4g35610
<---------
YAB1
--------->
AHL20(1)
--------->
AHL20(2)
<---------
YAB1
-----
aactgaatttagtgacttattttttattgtcatctgaaatttattaaaggagattgaaattacatatattttcattttttgattattatggttttcaaga
17522800
<-
----
<---
<---------
YAB1
<----
<-----------
GT1
<---------
TOE2(3)
--------->
GLK1(2)
--------->
AHL20(2)
<----------
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
ARR11(3)
------->
TEIL
<---------
AHL20(2)
--------->
AHL20(1)
<---------
ARR11(3)
---->
YAB1
<<<<<<<<<
GATA-1
--------->
AHL20(2)
<-----------
GT1
--------->
RVE1(1)
ataatgtattttgatttatctattgaattttttttgagtaattcaaattttattattcaaagtttatgttattcactacttaacacctaaaaaatctaat
17522900
<---------
AHL20(2)
<---------
ANAC55(2)
--------
YAB1
--------->
ANAC46
----->
YAB1
--------->
ANAC55(1)
--------->
YAB1
------
ICU4
--------->
ANAC55(2)
<---------
AHL20(2)
-----
ATHB12
<-----------
GT1
<---------
YAB1
-
ARR10
--------->
YAB1
------->
TEIL
--------->
AHL20(2)
<---------
ANAC46
catgtttcacaatgatatgttttatacgtatttttttggactacttaatgcatataatagttttttttttgtttatgcagtgttttgaaagagttaccca
17523000
----
------
---------
--------->
YAB1
<--------
<---------
AHL20(2)
-----------
--------->
AHL20(2)
------->
TEIL
>>>>>>>>>>>>>>>>>
LFY
<---------
bZIP60(1)
--------->
CCA1(2)
<------
MYB83
--------->
ZAT14
<---------
TGA2(1)
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
bZIP60(1)
--------->
ARR14(2)
<------
MYB46(1)
<---------
ZAT14
aaaacaaaaatcgttgttatgtcatcgatttattcatatcagatatgtatattggtttagttgatataagttggtttagtagaaccattgtatagtgtaa
17523100
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AGI:
At1g47640.1
Description:
similar to unknown [Populus trichocarpa] (GB:ABK93176.1); contains domain PTHR12869 (PTHR12869)
Range:
from: 17520629
to: 17522568
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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