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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-
<--
<--
<----
--------->
ICU4
<------
<---------
AHL20(2)
-------
--------->
AHL20(2)
<-------
<---------
ICU4
--------
<---------
AHL20(2)
--------->
YAB1
--------->
AHL20(2)
--------->
ATHB51
--------->
ATHB51
--------->
YAB1
<--------
HAHB4
--------->
ICU4
--------->
AHL20(2)
-------->
ATHB1
------->
AHL20(2)
--------->
AHL20(2)
<---------
ICU4
--------
AHL20(2)
<-----------
GT1
--------->
YAB1
--------->
ICU4
-
DOF2
--------->
AHL20(2)
----------->
GT1
---------->
DOF2
<---------
YAB1
tttaattatttaattatgtagtttctctcaaaattttgttaatggtataactatttgatacaaagataaaataaaaatcaaactcaaatagaattattat
16972300
<----
<-----------
RAV1(1)
<--------
--------
YAB1
<--------
-------
AHL20(1)
<---------
WRKY12
-------
AHL20(2)
--------->
WRKY18(1)
-----
YAB1
<---------
DEAR3(2)
---
ICU4
<----------
ID1
<---------
DREB2C(2)
-->
YAB1
---------->
DOF2
----------->
GT1
<--------
ZAP1
-----
--
YAB1
<---------
HSFB2a(2)
<---------
YAB1
--------->
ETT(1)
----
->
ICU4
--------->
HSFB2a(2)
----------->
HVH21
<-----------
GT1
<-----------
RAV1(1)
<---
tattttttgttgctagaaaagacaaaacaaaaactatttgacatgttatgcaatttatacaagttatgaaatgttattttttgtcggtcaaatttttatt
16972400
--------->
HSFB2a(2)
--------->
WRKY38(1)
<---------
HSFB2a(2)
<-------
-----
AHL20(2)
<---------
AHL20(2)
<-------
-
YAB1
--------->
WRKY12
<---------
AHL20(1)
<-------
-
AHL20(2)
<---------
WRKY18(1)
--------->
AHL20(2)
<---------
YAB1
---->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
----->
AHL20(2)
------>
ZmHOX2a(1)
--------->
AHL20(1)
--------->
AHL20(1)
------
AHL20(2)
<----------
DOF2
--------->
YAB1
<----------
DOF2
<---------
AHL20(2)
aatttagcatgttgacccaaaaaaaactctttgacatcctatagcaatgtcaaactaaaataaaattgcataactttcagaagtatattattttggctta
16972500
<---------
ANAC58
<---------
ICU4
<---------
AHL20(2)
<---------
YAB1
<-----------
GT1
--------->
AHL20(2)
--------->
ICU4
<---------
AHL20(2)
--------->
TOE2(3)
--------->
AHL20(2)
<---------
YAB1
<-------
GAMYB
--
ANAC58
<---------
AHL20(2)
--------->
YAB1
<---------
ANAC46
---
--
ANAC58
--------->
AHL20(2)
<---------
YAB1
<---------
ANAC58
<------
NtERF2
--
ANAC46
<------
ZmHOX2a(1)
<---------------
AGL15
--------->
AHL20(2)
<----
aaacattaaacaggaataaaatttgataaaatatgtctatgggccataaaactattataagagataattgcgttgatttaaacacttgggccgaattagt
16972600
*
TSS
<-
---
----
------
------>
NtERF2
<-----
--------->
ANAC46
<------
------->
MYC2
<---------
LBD16
<------
<-------
MYC3
<-----------
GT1
-------
------->
MYC3
------------>
CBF
<---------
ZAT14
<---------
<-------
MYC2
<------
NtERF2
<---------
ATHB12
<---------
GLK1(2)
--------->
SPL7
<------------
CBF
>>>>>>>>>>
E2Fb
------------>
CBF
<---------
ZAT18
<----
------->
DOF2
<---------
At4g35610
<-----------
GT1
--------->
ANAC58
--------->
ZAT18
<----
-----
ZAT6
<-------
TEIL
------>
NtERF2
--------->
LBD16
--------->
ANAC58
<------------
CBF
<--------
gaaagcccatacgatgcatatgccaaattggcgccaatatttcccgcctaatcgacgagagaacccaataaacgagtgtattgtgccctgattctgtc
gc
16972700
-----
NtERF2
--------->
KAN4(2)
------>
LBD16
<---------
HSFC1(2)
----->
LBD16
--------->
HSFB2a(1)
>
NtERF2
<---------
HSFB2a(1)
----
RAP2.3(1)
--------->
HSFC1(2)
--------->
REM1(1)
---
DEAR3(1)
<------
NtERF2
--------->
ZAT2
---
ETT(2)
----------->
GT1
<---------
RAP2.6(3)
-->
ETT(2)
--------->
LBD16
--------->
DEAR3(1)
<---------
At4g35610
--
RAV1(1)
<---------
ANAC58
--------->
RAP2.3(3)
--------->
LBD16
-----
LBD16
<---------
ANAC46
--------->
RAP2.3(2)
--------->
At4g35610
--
NtERF2
<---------
ANAC58
<---------
DOF5.7(2)
<---------
ALFIN1
---
HVH21
---------->
DOF2
<---------
LBD16
--------->
DOF5.7(2)
--------->
At4g35610
<--
cggaaacaatacacagatagagcgagagaa
atggcgggagaaaattccgataacgagccgtcttcaccagcttcaccttcttccgctggattcaacacag
16972800
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
------
--------->
YAB1
--------->
ANAC58
----------->
HVH21
<---------
ICU4
--------->
At4g35610
--------->
CCA1(2)
<---------
ATHB12
<---------
ZAT2
--------->
bZIP60(2)
<-----
------>
MYB83
<---------
At4g35610
<---------
YAB1
--------->
MYB52(1)
------>
MYB46(1)
--------->
ZAT2
--------->
ANAC46
----------->
TGA1
--------->
WOX13(1)
--------->
LBD16
>>>>>>>>>
TBF1
<---------
ARR14(2)
----------->
RAV1(2)
----
ZmHOX2a(2)
--------->
ANAC46
--------->
At4g35610
--------->
ARR14(2)
------->
TEIL
atcagttaccaatcagtacaagccaaaactccgaaaatttctccgatgaagaagaagcagctgtagatacccaagtcattagagatgagcctgacgaagc
16972900
<---------
ATHB12
------>
ZmHOX2a(2)
--------->
GLK1(1)
<---------
GLK1(1)
<---------
AGP1
<----------
DOF2
--------->
ARR14(3)
<---------
ARR14(3)
--------->
ARR11(3)
<-----------
ARR10
<---------
ARR14(2)
===============
HOX2a_HOX2a
>>>>>>>>>
TBF1
<---------
ARR11(3)
>>>>>>>>>
TBF1
--------->
ARR14(2)
=================================
HOX2a_HOX2a
==================================
HOX2a_HOX2a
<------
ZmHOX2a(1)
==============
HOX2a_HOX2a
--------->
MYB52(1)
--------->
YAB1
--->
At4g35610
<------
ZmHOX2a(1)
--------->
YAB1
<---------
YAB1
--------->
ICU4
----
At4g35610
>>>>>>>>>
TBF1
<------
ZmHOX2a(2)
<---------
YAB1
<---------
KAN4(2)
ggaggatgaagaagaagaagaaggagaagatctcttcaatgatacttttatgaacgattatcggaagatggatgagaatgatcagtatgagtctaatgga
16973000
------>
ZmHOX2a(2)
<---------
ZAT2
<---------
At4g35610
<---------
ANAC58
----------->
TGA1
<---------
ANAC58
----------->
HVH21
<---------
YAB1
--------->
At4g35610
--------->
ANAC58
--------->
ZAT2
<-----------
RAV1(2)
----------->
RAV1(2)
---------->
DOF2
--------->
ANAC58
<---------
At4g35610
<---------
YAB1
<-----------
HVH21
<---------
ANAC58
--------->
ARR11(3)
--------->
YAB1
--------->
MYB59
<---------
WRKY18(1)
<---------
ARR11(3)
<---
--------->
LBD16
<---------
TOE2(3)
<---------
ANAC58
<---------
ARR14(2)
<------
<---------
ANAC46
--------->
CCA1(2)
----------->
HVH21
<---------
At4g35610
<------
atagatgattccgtcgatgatgaaagagatttaggtcaggctatgcttgaccgtcgtgctgctgacgctgatcttgatgctcgtgaaaatcgacttgcga
16973100
--------------->
AGL15
<-----------------
AG
----------------->
AGL2
<---------
AHL20(2)
<---------
YAB1
<--------
HAHB4
-------->
HAHB4
--------->
ATHB51
--------->
YAB1
-------->
ATHB1
<---------
ICU4
<---------
AHL20(2)
<---------
ATHB51
<---------
HSFB2a(1)
--------->
ICU4
<---------
HSFC1(2)
<---------
YAB1
--------->
ARR14(2)
--------->
HSFB2a(1)
>>>>>>>>>
GT-2
<---------
ARR14(2)
---------------
--------->
HSFC1(2)
--------->
At5g28300
--------->
GLK1(2)
--------->
ZAT18
<---------
ZAT2
------->
GAMYB
<-----------------
AGL1
<---------
ZAT14
--------->
ZAT2
--------->
MYB52(1)
--------->
TOE2(3)
--------->
ZAT14
--------->
ANAC58
<---------
DOF5.7(2)
<---------
GLK1(2)
--------->
TOE1(3)
--------->
ANAC58
--------->
DOF5.7(2)
==========================================================
------
ARR14(2)
--------->
ANAC46
--------->
AHL20(2)
--------->
TOE2(3)
---
ANAC58
<-----------------
AGL1
<-----------------
AGL3
--------->
GLK1(1)
---
ANAC58
------>
ZmHOX2a(1)
----------->
GT1
<---------------
AGL15
<---------
GLK1(1)
atcgcaagcttcctcatcttcttcacgataacg
gtaattattaaatccctaattggaatctggcgaaattggaaaccctaaatgttcactgattttggga
16973200
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AGI:
At1g44900.1
Description:
ATP binding / DNA binding / DNA-dependent ATPase. similar to DNA replication licensing factor, putative [Arabidopsis thaliana] (TAIR:AT2G16440.1); similar to minichromosomal maintenance factor [Triticum aestivum] (GB:AAS68103.1); similar to MCM protein-like protein [Nicotiana tabacum] (GB:BAC53939.1); similar to minichromosome maintenance factor [Lactuca sativa] (GB:ABS87383.1); contains InterPro domain MCM protein 2; (InterPro:IPR008045); contains InterPro domain MCM; (InterPro:IPR001208); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold-like (InterPro:IPR0160
Range:
from: 16972699
to: 16977081
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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