Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                     --------->ANAC46                                                                                 <---------ALFIN1                                                           <------ZmHOX2a(1) ------>ZmHOX2a(2)                                                           ========================HOX2a_HOX2a                                                           ==================HOX2a_HOX2a                                                         --------->ALFIN1   <------ZmHOX2a(2)                                                        ============================HOX2a_HOX2a                                                        ===========================HOX2a_HOX2a                                                        <------ZmHOX2a(1)  --------->ARR14(2)                                                        =====================HOX2a_HOX2a                                                <----------DOF2<----------DOF2 ------>ZmHOX2a(1)                                                --------------->AGL15      <---------ARR11(3)                       <---------ANAC58         <---------------AGL15      <---------ARR14(2)               --------->TOE2(3)               --------->TOE2(3)           --------->ARR11(3)         --------->ANAC58                      --------------->AGL15      <------ZmHOX2a(1)         --------->ANAC58                      <---------------AGL15  ================HOX2a_HOX2a         ------>MYB83  <---------ANAC58       ----------------->AGL3  ------>ZmHOX2a(2)        ------         ------>MYB46(1)    <---------WOX13(1)----------------->AGL1--------->ARR11(3)     ----------       --------->TOE1(2)  --------->ATHB12 <----------DOF2 =========================HOX2a_HOX2a<-----   aatatcaaacctagcaacttcaatagcttgattaacatctaaaaactttcctttataaggaggagcttttgatctaggatcctccacatcaaacaaaggt  16853300                                                                                              -------                                                                                           --------->ANAC58                                                                                           --------->ANAC58                                                                                    <---------ATHB12                                                                  <-----------HVH21------>MYB46(1)                                                 <---------ARR14(2)   --------->ANAC58    --------->WOX13(1)   --------->WRKY12                    ------>MYB46(1)           <----------DOF2   ------>MYB83   --------->WRKY38(1)               <---------MYB46(2)      <-----------GT1     <---------MYB59<---- --->ARR11(3)                        --------->MYB46(3)   <---------GLK1(2)     --------->MYB46(3) <- >DOF2                         --------->YAB1    --------->ARR14(2)   --------->ANAC46  <---------ATHB12 ----ARR11(3)           <---------ZAT18------>MYB83  --------->TOE2(3)--------->ANAC58--------->WOX13(1)   ctccattgactcttcttctcaactaatccactctcatcaccaaacacagcaaataccctaaattctcctttcacgccctgtaaccaaacaatcactcaat  16853400                                                     --------->ICU4                                       ----------->GT1<---------ICU4                                       --------->ANAC58                                       --------->ANAC58      <---------ARR11(3)               <---------ANAC55(2)      --------->ARR11(3)               --------->ANAC55(1)      --------->GLK1(2)                --------->ANAC55(2)                    --------->ALFIN1     <- -->WOX13(1)                           --------->ANAC46                    --------->DAG2      ------ -----ATHB12  <----------DOF2  ----------->GT1 ----------->HVH21          ---------->DOF2----------->GT1 --------ANAC55(2)          <---------CCA1(2)<----------DOF2           ----------------->AGL1 -------   cacttaaaaatctaaacttttactaaacccatatcgcaaaaacgtaactttgacactgattacagagtttgaagccaaaagtggagaagaagagtaaaaa  16853500                                                                                             <------NtERF2                                                                                             --------                                                                                            <--------                                                                                           <---------ANAC58                                                                                           <---------ANAC46                                                                                           --------->TGA2(1)                                                                                           <---------ANAC58                                                                                           <---------TGA2(1)                                                                                           --------->bZIP60(1)                                                                                  <---------ANAC58                                                                                  <---------ANAC58                                                                                  <---------ANAC46                                                                                 --------->ATERF1(1)                                                                                 <------NtERF2                                                                                <---------ATERF1(1)                                                                                ------>NtERF2--------                                                                                <---------RAP2.3(1)                                                                                <---------ORA47(2)                                                                                <---------RRTF1(1)                                                                                <---------DEAR4(2)                                                                                <---------ERF1                                                                               <---------DEAR3(1)                           ======================HOX2a_HOX2a                   <---------RAP2.3(3)                           ------>ZmHOX2a(2)                                   <---------RAP2.3(2)                         <---------ARR14(2)                                    <---------RRTF1(3)                         --------->GLK1(2)                --------->DAG2       --------->DEAR3(1)   -          --------->HSFB2a(2)                            ---------->DOF2      <---------ABI4(1) <----      <----------DOF2    --------->ARR14(2)   --------->CCA1(2)              <---------ATERF1(1)----- ----------GT1    ---------->DOF2            <---------ARR14(2)             --------->ANAC46<-------- --->DAG2 <---------HSFB2a(2)                --------->ARR14(2)          <---------REM1(2) <---------bZIP60(1) --->DOF2<---------LBD16<------ZmHOX2a(1) <------ZmHOX2a(1)        <------ZmHOX2a(1) <-------TEIL ---   gttaccttctttctggagagaaaagaggatcgggttttagagaaggagatagggagagataaagcagaaggactaaacacggcggcgttcatggcgtcac  16853600                                                                *TSS       <---------AHL20(2)                                                                --------->AHL20(1)                                                                <---------AHL20(1)                                                                --------->AHL20(2) ->ATERF1(1)                                                <---------AHL20(2) ---HVH21                                               <----------DOF2  <---------CCA1(1) --->HVH21                                           <-----------GT1     <---------RVE1(1) --------->DOF2                                     <-----------GT1     --------->ARR11(3)      ----- -----LBD16----------->GT1                      --------->ARR11(3)      <---------ARR11(3)     ====== ---->At4g35610                                 <---------ARR11(3)<------------CBF             ====== ---TGA1 <---------ZAT14        <---------HSFB2a(2)<---------AHL20(2) <---------TOE2(3)        <----- ------>LBD16               ------->TEIL      <---------TOE2(3) <---------AHL20(2)         ----------   cggaaagagagtgaagaaaaatggaaaacgaattttagaagaaagtttgagattttatctttttattttattgagattttttttgttgataagaaaagga  16853700                                                               <------NtERF2                                       --------->REM1(2)     <---------ANAC46                                     <-------MYC2           <------NtERF2                                     <-------MYC3         --------->ALFIN1                                     ------->MYC4        <-------MYC2                                     <-------MYC4        ------->MYC2                                     ------->MYC2        ------->MYC4                                     ------->MYC3        <-------MYC4          ------>ZmHOX2a(2)         <--------ABF1        ------->PIF5         <------ZmHOX2a(2)          --------->O2         ------->MYC3        <---------ARR14(2)          <---------ANAC55(2)  <-------PIF5     <------NtERF2                  --------->ANAC55(2)  <-------MYC3     --------->LBD16                <---------O2         -------->ABF1    --------->ANAC58                <---------TGA1a     <---------ANAC55(2)    --------->ANAC46                --------->TGA1a     <---------TGA1a    --------->ANAC58                <---------ANAC46    --------->ANAC46   <---------LBD16      --------->HSFB2a(2)             --------->ANAC55(2)      <---------YAB1 ---->ARR11(3)          <---------HSFB2a(2)             --------->TGA1a          --------->ICU4    <- ===============HOX2a_HOX2a    ----------->HVH21        --------->O2   --------->ARR14(2)     ------- ================HOX2a_HOX2a <---------At4g35610        <---------O2   <-----------GT1        <------ -ZmHOX2a(1)           <---------LBD16--------->ALFIN1 ------------>OsbHLH66  --------->ICU4 -------- >DOF2  --------->ARR14(2)   --------->At4g35610<------------CBF       <---------ARR14(2)    <-------   ttttgcccgcgatctgagaatgccttcgggaagatgacacgtgtagagagaattgaacacgtggcggtattaatatccacatgatgatgaagagggattt  16853800       --------->ARR11(3)       <---------GLK1(2)       --------->ARR14(2)                                                    --------->WOX13(1)       <---------ARR14(2)                                              <---------ANAC58      <------ZmHOX2a(1)                                                <---------ANAC58     <------MYB46(1)                                                   <-------GAMYB     <------MYB83                                                     <------MYB46(1)   <--------P                                                         <------MYB83 <---------ZAT2                          <---------ANAC58             <---------MYB46(3) ----------RAV1(2)          <----------DOF2                          <---------AtMYB61 -->GLK1(1)                <---------ANAC58            ---------->ID1--------->MYB59 ---GLK1(1)                <---------ANAC58     --------->ICU4  ------>ZmHOX2a(1) ->ARR14(2)            <----------DOF2   <---------ANAC46       --------->LBD16 --------->ZAT6 --ARR14(2)    <---------TOE2(3)         <---------ANAC58     <-----------------AGL1   gccaggtaggattttctaagattagctttgcttttgtgagttttcttgtaatgttttgtcattttcctggtttggttgtccatcactagttttttttgtt  16853900                                                                                <---------ANAC46   --                                                                                <---------ANAC55(1)<-                  ------->TEIL                                             --------->ATHB12     <----    ----------->GT1                               ---------->DOF2   ---------->DOF2            ------   <---------TOE2(3)                      <---------AHL20(2)      <---------AHL20(2) ----------->GT1 <---------AHL20(2)                      --------->ICU4---------->DOF2  ----------->GT1       <------   tgtttaatgtgaaaataatgtatatgttatttgtgctatggtatttattgtataaagaaaagatagatttaaaagagtgattaagtgtagaaaaatgagg  16854000                                       <---------AHL20(2)                              <---------WOX13(1) ------->HSFC1(2)                     <---------AHL20(2)                              --------->ARR14(2) --------HSFC1(2)                     --------->AHL20(2)                      <---------YAB1 --ZmHOX2a(1)                         <---------AHL20(1)                     <---------ARR11(3) ----->GT1               --------->AHL20(2)                <---------YAB1    --------->AHL20(1)     < ---TOE2(3)          ----------->GT1  --------->AHL20(1)   <-------TEIL      <---------AHL20(1)  <---   aaacatctattttagagagatagtagttaaaatacccaaatttattcaaactaaattgagtttcattgtccaaaaacaatatttttgggattggcatttg  16854100                                                                             --------->ATHB12                                                                             --------->ATHB51                                                                             -------->ATHB1                                                                             <---------ICU4                                                                            --------->ICU4                                                                   <----------DOF2                                                                <---------ARR11(3)                                                                --------->ARR11(3)                                                               --------->GLK1(1)                    ------>MYB83                               <---------GLK1(1)                    ------>MYB46(1)                            <---------RVE1(1)                    --------->MYB52(1)                        --------->ARR11(3)                  <---------MYB59                             <---------ARR11(3)                    <               <---------WRKY18(1)                    --------->AHL20(2)    --------->AHL20(2) <-----              --------->WRKY12                      --------->TOE2(3)       <---------AHL20(2) <-----              --------->WRKY38(1)            ------->TEIL  <---------TOE2(3)<---------ATHB51  <------           <---------MYB46(3)       <-------TEIL    --------------->AGL15<---------AHL20(2)  <------- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <---------CCA1(2)<------ZmHOX2a(1)         <---------YAB1 ------TOE2(3)--------->WRKY45     <-----------GT1  <---------------AGL15--------->AHL20(2) <--------   agataatttgaagttgttgaccaaacagagtattaagttacattttgaatcttacattatttaggatatctttgttaaattattgtattatgttttggtt  16854200  Previous    Next  AGI:  At1g44446.1    Description:  CH1 (CHLOROPHYLL B BIOSYNTHESIS); chlorophyllide a oxygenase. Identical to Chlorophyllide a oxygenase, chloroplast precursor (CAO) [Arabidopsis Thaliana] (GB:Q9MBA1;GB:Q3ECX2;GB:Q3ECX3;GB:Q9SPF2;GB:Q9XJ37); similar to TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G24820.1); similar to hypothetical protein OsI_033526 [Oryza sativa (indica cultivar-group)] (GB:EAY79567.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61873.1); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48003.2); contains InterPro dom Range:  from: 16850799    to: 16853664    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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