Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                              ----------->GT1                                 <---------ICU4                                 <--------ATHB1            <---------DEAR3(2)   -------->HAHB4            <---------MYB46(3)   --------->ATHB51       --------->DEAR3(2)       <---------ATHB51    <---------SPL7              --------->ICU4                                                      -   <---------ANAC58             --------->AHL20(2)                                                 <-   <---------ANAC58             <---------YAB1                                                    --- ------>ALFIN1                  <---------AHL20(2)                                              <---- ----MYC3  <---------DEAR3(1)  --------->AHL20(2)          <---------GLK1(2)                    ----- --->MYC3 <---------MYB52(1)   <---------AHL20(1)--------->MYB46(3)      --------->CCA1(2)-----------   gtgtggagtaccgtcggttttcaaaaacttcaaaataattgtatgtgggtaacaactccaagattgttgtattggatataagcatttgtctgcaacacaa  16754600          --------->ARR14(2)          <---------ARR14(2)          --------->PCF5                                                                ------>ZmHOX2a(2)        --------->ZAT18                                                               <---------ARR11(3)        <---------SPL7                                                                <---------AGP1        ----------->HVH21                                                             <---------ARR14(2)        <---------ZAT18                                                               --------->ARR14(2)      <---------At4g35610                                                             --------->ARR11(3)      --------->At4g35610                                                         ------------------- <---------ANAC46 --------->YAB1                                               <---------ANAC58 -------->ALFIN1 <---------YAB1----------->RAV1(2)                             <---------ANAC58 --------ZAT14  <<<<<<<<<<GATA-3                                           <---------At4g35610 ------>ALFIN1  <<<<<<<<<<GATA-4       <-------TEIL                    <-----------RAV1(1)   <------- -----TGA1a     <<<<<<<<<<GATA-1 --------->LBD16                       <---------MYB46(3)<----------DOF2 ---->TGA1a     <<<<<<<<<<GATA-2 ------>ZmHOX2a(1)                  <----------DOF2  <---------CCA1(2) >RAV1(1)------>NtERF2   <------ZmHOX2a(1) <---------LBD16   --------->AHL20(2)<---------ANAC46   gtgtggtgagcggacccttatcatataggatgctcctgaaattcatcgggattttaagagaaattcaatacttttgttgctgcttgtggatcttttcact  16754700                                                                                                    <                                                                                                    -                                                                                                    -                                             ----------->GT1                                        <                                            <---------TOE2(3)                                      <-                                         >>>>>>>>>RAP2.2     --------->AHL20(1)          ----------->GT1                                       <---------ARR11(3)    --------->AHL20(2)          <---------HSFB2a(2)                                ----------->GT1      ----------->GT1                    <---------ANAC55(2)       <----------DOF2        --------->At4g35610   --------->DAG2                     <---------LBD16    <<<<<<<<<NAM              <---------At4g35610 ---------->DOF2                  <---------ICU4---- ---->TaNAC69(2)      <<<<<<<<<GT-1   <---------CCA1(2)      <---------AHL20(1)    <---------------AtSPL8 ----GT1  --------->AHL20(2) <---------AGP1---------->DOF2   <---------AHL20(2)    <---------------AtSPL3   tcttcatcccttttatatagggatttacctagagctgtatatatctaaagttaaaaggcaaaatttattatctccaaaaaacaaattagtacgggaaaac  16754800            <---------ANAC46          <---------ZAT14          --------->ZAT14                                               <---------ARR11(3)     <---------At5g28300                                              --------->MYB59    <-----------GT1                                             --------------->AGL15 ---------ICU4                                                  <---------------AGL15 -------->YAB1                                                  --------->AHL20(2) --------->LBD16 -------->ATHB12                                               <-----------------AGL2 --------HAHB4                                               <-----------GT1       <------NtERF2 --------ATHB12            <---------GLK1(2)            --------->AHL20(2)     <---------SPL7 ----->WOX13(1)      <-------TEIL                     --------->AHL20(2)--------->ARR11(3)        <--   aatcatttacagttcagtatagatgcatagattattttcaaaatcaatgtctcaatttttatataactaaataaggtctatcgtccgcataaatagacga  16754900             <---------YAB1             <---------AHL20(2)             --------->AHL20(2)                  <---------AHL20(1)       ----------->GT1            <---------AHL20(1)                --------->AHL20(2)      <---------YAB1              ---            --------->AHL20(1)                --------->YAB1         --------->AHL20(2)        <<<<<<           --------->YAB1   --------->YAB1 --------->YAB1           --------->AHL20(2)         <<<<<<       --------->AHL20(2)   --------->AHL20(2)<---------AHL20(2)    <---------AHL20(2)        ------>MYB46(1)     ----------->GT1     --------->YAB1   <---------AHL20(2)   ------------>CBF               ------>MYB83 -------ZAT6--------->AHL20(2)        --------->AHL20(2)   --------->TOE2(3)             <-----------GT1   gtgtaagaagtaaatataattttgtattaataatatttgtataaataataatatatgtttttcttaacaattaatatagtaattttgttttaaaccaaat  16755000                                                                                                    -                                                                                                  ---                                                                                                <----                                                                                                <----                                         --------->AHL20(2)                                  <------ZmHOX2a(1)                                         <---------AHL20(2)                                 ---------                                        --------->AHL20(2)                                <---------LBD16                                --------->DOF5.7(2)                                       --------->HSFB2a(2)                               --------->TOE2(3)                                     <---------DAG2--                       <XXXXXXXXXXXXXXXXXXXXMIR1888                              -------->P--------->LBD16                      <----------DOF2 *TSS                                      <-----------GT1 <---- --------->CBF     <-----------GT1<-----------GT1                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <<<SARD1  --------->GLK1(2)   <----------DOF2                         <---------ZAT18<----------DOF2 <<<CBP60g<---------GLK1(2)    --------->TOE1(3)                     --------->At4g35610  <---------HSFB2a(2)   ttcaatcttacacattctgtttttctttacaaactttaactatttatttcaacatgctggtcccaaatactagctcacatttcaacccctttccaggacc  16755100                                                                                                 ----                                                                                                 ----                                                                                               <-----                                       <------ZmHOX2a(2)                                   <---------ALFIN1                                      <---------ARR11(3)          --------->At5g28300      --------->ZAT6                                      --------->ARR11(3)         ------->GAMYB           ------>MYB83        <----------DOF2         <---------ZAT2             --------->ANAC58              ------>MYB46(1) -------->ALFIN1               --------->ANAC58            <---------ANAC55(2)          --------->ANAC46 ------>ALFIN1                 --------->ANAC58            --------->ANAC58            <---------MYB55(2) -----ANAC58                   --------->ANAC46      <---------ANAC58                  --------->MYB46(3) -----ANAC46           <---------ARR11(3)  --------->ANAC46--------->ANAC55(2)        --------->ANAC46 -->HVH21              --------->ARR11(3)  --------->REM1(1)  --------->MYB52(1)      --------->ANAC58 ------->REM1(2)  ----------->GT1--------->TOE1(2)   <---------ANAC46                 --------->ANAC58 -----ANAC58     --------->MYB59--------->ZAT2       <---------ANAC58               <-----------GT1   gtgtggagggctttctagtcaggtatatattccaagctacgatctacaccatttggcgagaacgtaacggtagaagacacgatgtttcacccaacactcc  16755200                                                                                            <--------                                                                                            ---------                               --------->ANAC55(2)                                        ------>NtERF2                               <---------ANAC55(2)                                       --------->DEAR3(1)                               --------->ANAC46                                         <------NtERF2                               --------->ANAC58                                        <---------RAP2.3(1)      --------->ATHB12         --------->ANAC58                                        ------>NtERF2     --------->AHL20(2)       <---------LBD16                                         <---------DEAR3(1)     <---------AHL20(2)     <---------ARR14(2)                  ----------->HVH21 xxxxxxxxxxxxxxxx>smallRNA(i)   --------->TOE2(3)       <---------At4g35610              <------MYB83         <---------ANAC58  --------->REM1(1)        --------->At4g35610              <---------DEAR3(2)   <---------ANAC58  <-----------------AGL3   --------->ZAT2          --------->YAB1               <---------ZAT2     -- ----->LBD16               <---------ZAT2       --------->WOX13(1)      <---------ANAC58<----------CDC5 -->NtERF2             --------->ANAC58        --------->MYB46(3)       <---------ANAC58--------->ATERF1(1) ----LBD16             --------->ANAC58   --------->YAB1    <------MYB46(1)     --------->ZAT2  <----   ggctacattaattggatggatagataagcagctacggaatcaaatcacaacaatcagacagtcggtatgacaaggcgttccaagcttggcgccgagctcg  16755300                        <-----------GT1                      <-----------GT1                                           <-----------GT1    <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <---------REM1(1)    ------->TEIL  <---------ARR11(3)                                         ----------->GT1 -ZAT2            <---------GLK1(2)                                  <---------ZAT18 >ZAT2     ---------->DOF2                                          <xxxxxxxxxxxxxxxxsmallRNA(s)  <-- ------------------->WRI1    <---------ALFIN1                  ----------->RAV1(2)          <-------- -----ALFIN1      --------->ARR11(3)                  <----------DOF2--------->ZAT18        <--------   accctgaacgtttcaaagaagatttttctccccacttcaaaattttgttctatacactttcaataacctgatgcactagttgtaacaaaatacacttttt  16755400                --------->TOE2(3)        --------->YAB1               --------->ZAT6           <---------YAB1              <---------TOE2(3)         --------->ICU4           <---------AHL20(2)         --------->YAB1           --------->AHL20(2)         <---------ICU4          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->AHL20(2)            --------->ICU4       <---------AHL20(2)            <---------YAB1      <---------AHL20(1)         --------->AHL20(1)      --------->AHL20(2)         --------->AHL20(2)   --------->AHL20(2) --------DOF2<-----------GT1    --------->YAB1        <---------AHL20(2) --DOF2<---------YAB1  <-------TEIL--------->YAB1    --------->AHL20(2)          --------->YAB1 -DAG2--------->AHL20(1)      --------->AHL20(2)----------->RAV1(1)          ----------->GT1   cttttgaatataatttaacattagattcaaaaaaaaataataataataaacaacatttaattctacatactctattgtatcgataatatttgaattctaa  16755500  Previous    Next  AGI:  At1g44075.1    Description:  transposable element gene. pseudogene, hypothetical protein Range:  from: 16755038    to: 16755304    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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