Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                             <---------ATHB12                                --------->GLK1(2)                               --------->KAN4(2)                              <---------HSFB2a(1)            --------->ARR11(3)                              --------->HSFB2a(1)            --------->AHL20(1)                              --------->KAN4(1)             <---------CCA1(2)                              <---------KAN4(1)    <---------ARR14(2)            <---------CCA1(2)                           <------ZmHOX2a(1)       --------->ARR14(2)     ---------->ARF1              <---------ZAT6  <----------TaMYB80   <---------GLK1(2)      <---------CCA1(2) >ANAC58     <---------WOX13(1)<---------ARR14(2)  --------->ARR11(3) <---------ANAC46 >ANAC58    <---------ANAC58 ---------->TaMYB80    <---------ARR11(3) <---------ANAC58 >ANAC46    <---------ANAC58 <---------KAN4(2)   ----------->ARR10    <---------ANAC58   aaatttcatgtattgagtgatagaatataggaatattctgttacaatcaagtagatactcgtatatattgtttcttgtatcccatattttgttgaacttc  16505500                                <---------ATHB12                  <---------AHL20(2)   ------->TEIL              <---------------AGL15 <---------ATHB12         <---------MYB52(2)           <---------YAB1         <---------MYB52(1)   --------->WOX13(1)      <---------ICU4                   <----------DOF2        <----------DOF2   ----------->GT1             -------->ATHB1             ---------->CDC5 <---------AHL20(2)---------->DOF2--------->WOX13(1) --------->ICU4             <------NtERF2  <-----   tatgtaattcctttagctatttaaagtcttgtaaatcaatgaatcccttgagagaattattccactaacatggtattagggcctcatcgcttttgatttt  16505600                                                                                              <------NtERF2                                                                        <---------AHL20(2)   ------>NtERF2                           <----------DOF2                             <---------AHL20(1)    --------                  --------->REM1(1)                                    --------->AHL20(2)  <---------LBD16              <---------At4g35610                     <----------DOF2  <---------AHL20(2)<-------PIF5 <-----------GT1<----------DOF2                <----------DOF2      --------->WOX13(1)   ------->PIF5 ----AHL20(2) --------->At4g35610          <----------DOF2<----------DOF2               ----------->RAV1(2)   ttttttcttcgtcttccgcttcatcttctctttcattttctcttcctttctttcttctttcttttttcatcaattaatttcaatagatgcccctgcggca  16505700                                                                                <---------YAB1                                                                              --------->YAB1                     <------MYB46(1)                                          <---------ICU4                     <------MYB83                                             -------->HAHB4               <-------TEIL                                                  --------->ICU4             ------->MYC2                                                 --------->ICU4             <-------MYC2                                                 <---------YAB1             <-------MYC3                                               --------->YAB1             ------->MYC3                                              <---------YAB1             <-------PIF5                                             --------->ARR11(3)             ------->MYC4                                       --------->HSFB2a(2)  --------->ALFIN1             ------->PIF5        --------->TOE2(3)              <---------HSFB2a(2)  <-----------RAV1(1)           ------->TEIL<---------ZAT6<---------CCA1(2)          >>>>>>>ZML2<---------ICU4 <---------ANAC46        --------->ANAC46       ------>MYB46(1)                  <---------HSFC1(1) <---------ANAC46        --------->ANAC58       ------>MYB83               ------>ZmHOX2a(1)<--------HAHB4 <---------ANAC58 ->LBD16--------->ANAC58      ----------->RAV1(1)   <---------ATHB12  <---------ARR11(3)  <---------ANAC58   aatcagacacacgaacgtgcatttggtgttaccaacatcaaatctcacatcccactcatcctcgttctagatgatcataattatgatgtgtggcatgagt  16505800                                                                                 <------MYB46(1)                                                                         <---------bZIP60(1)                                                                         --------->bZIP60(1)                                                                         <---------REM1(1)                                                           --------->ZAT2<---------bZIP60(2)                                                           <---------ZAT2<-----------RAV1(1)                                                           ----------->RAV1(2)   <------MYB83                                                           <---------At4g35610<---------ANAC46                                                           --------->At4g35610<---------ANAC58                                                           ==========================RAV                  <---------O2                           ============================RAV                  --------->O2<---------HSFB2a(2)    <---------ANAC58  --------->YAB1                  ==========================================bZIP_DOF   <---------ICU4                <---------ALFIN1        <---------ETT(2) <-----------RAV1(2)  <---------ANAC58 ------         <------------CBF     --------->HSFB2a(2)    <---------ANAC58 <---------ATHB12        <------        <---------ICU4        <-----------RAV1(1)<----------DOF2     <---------TOE2(3)   --------->ANAC55(2)        --------->ATHB12     <---------LBD16  <---------ALFIN1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------ANAC58--------->TGA1a    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  *TSS ----------->GT1  <---------ANAC58<---------TGA1a<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ICU4     <---------ANAC55(2)   tgtttcttactcattgcctcacgtttgatgttctggggcatctcgacaacactttgcttccagctgatgctaatgatgtcgcttggtaaaaacgtgactg  16505900                                                                              <---------YAB1                                                                           <---------MYB52(1)                                                                         --------->ANAC55(2)                                                                         --------->ANAC46                                                                         --------->ANAC58                                               ------>ZmHOX2a(2)         <---------ANAC55(2)                                              <------ZmHOX2a(2)          --------->ANAC58                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)           --------->ANAC55(2)               ------>ZmHOX2a(2)             --------->ARR14(2)   <---------ANAC55(2)        <----------DOF2<---------ALFIN1      --------->ARR11(3)   --------->ANAC58                ---  --------->WRKY18(1) <---------ZAT18        <---------ARR11(3)   --------->ANAC58    --------->CCA1(2) ----->HVH21  xxxxxxxxxxxxxxxx>smallRNA(i)   <---------ARR14(2)----------->TGA1      <---------ARR14(2) ---WOX13(1) <---------AGP1     <---------ALFIN1               ----------->HVH21     --------->ARR14(2)   actggtcaagctttggatctatggcacacttgctccacctctgttccgatcttccttccaaactggtgacgcatcacgttatgtttggatacgagtagag  16506000                                                             <---------ARR11(3)                                                             <---------ARR14(2)                                                             --------->ARR14(2)                                                            <------ZmHOX2a(1)                                                            =======================HOX2a_HOX2a                                                            ==========================HOX2a_HOX2a                                                          <---------TOE2(2)                                                         <-----------RAV1(2)                                                         <---------LBD16                            <                                                    <---------SPL7                                 <-                                                  <-------TEIL                              <--------                                               --------->ZAT2--------->ARR11(3)           --------->YAB1                                             ------->GAMYB--------->LBD16      <------ZmHOX2a(2)   --                                   --------->At4g35610  --------->TOE1(2)   ------>ZmHOX2a(2)-------- ------>GLK1(2)---------->DOF2     <---------At4g35610--------->SPL7   <---------WOX13(1)<---------YAB1   aatcagtttcaaaacaataaagaagtaagagctattcagcttgacaacgagcttcgtacccaggatattggagattgatcgatccaagtttattatcaga  16506100                                                  --------->ANAC58                                                  --------->ANAC46                                                  --------->ANAC58                                                 ------->TEIL                                              <---------ATHB12                                           <---------WRKY38(1)     <---------ATHB12        --------->YAB1<---------WRKY12             <----------DOF2 ------ZmHOX2a(2)           <---------ATHB12--------->WOX13(1)         <---------ANAC58 --------ARR11(3)   <---------ANAC58      --------->WRKY18(1)          <---------ANAC58 -YAB1         --------->ARR14(2)        <-----------HVH21        ------->TEIL                 ------ ------->ARR11(3)   <---------ANAC58    --------->LBD16       xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   - ->YAB1        <---------ARR14(2)     <---------LBD16      <-----------HVH21            ---------->DOF2   agatcaaatcactcgccgatttgcttgccaatgttgatgctccggtcaatgaacgtaacttggtcatgtacttgcttaatggtcttagagaaaagtttga  16506200                                                                                                <----                                                                                                -----                                                                                             <-------                             <---------ANAC58                                             --------->ANAC58                             <---------ANAC58                                             --------->bZIP60(2)                           <------ZmHOX2a(2)                                              --------->REM1(1)        <---------TOE2(3) <---------ARR11(3)                                              --------->ANAC58      --------->AHL20(2)  --------->ARR11(3)                                              <---------ALFIN1      <---------AHL20(2)  <---------ARR14(2)                                              --------->ANAC46     <---------YAB1       --------->ARR14(2)                                         --------->ANAC58   <---------ICU4        ------->GAMYB                                               --------->ANAC58  <---------YAB1        --------->MYB46(3)                                           --------->ANAC46  --------->ICU4      --------->MYB52(1)                                            --------->DAG2 --->YAB1          --------->YAB1                                                  ---------->DOF2 -------->YAB1     --------->ANAC46           ---------->DOF2        <------ZmHOX2a(1)  ----------->RAV1(1)   taacataattaatgtaatcaaacacaacgatccttgtccaacttagagaaaagtttgatgctggaactgtaggagagtcgtctcaaaaagccacaccacc  16506300                                           --------->ATHB12                   <---------YAB1          <---------ICU4         <----------DOF2                  --------->KAN4(2)--------->At4g35610        <------NtERF2                <------ZmHOX2a(2)  <---------ZAT2            ------>NtERF2                        ---                <---------YAB1     --------->ZAT2           --------->DEAR3(1)            ------->GAMYB        --------->ANAC46           <---------At4g35610    <-----------HVH21              --------->MYB46(3)       ------->GAMYB           <---------ALFIN1           --------->ABI4(1)             ------>MYB83<     --------->ANAC46          --------->AtMYB61          ------>NtERF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     --------->ANAC58         --------->MYB46(3)         --------->DREB2C(2)            ------>MYB46(1)     --------->ANAC58        -------->P   <---------YAB1 --------->DEAR3(1)            ----------->RAV1(1) -----DAG2    --------->YAB1--------->WOX13(1)          --------->DEAR3(2)             --------->MYB52(1) ---->TOE2(3) ------->GAMYB--------->MYB46(3)           --------->ORA47(2)            --------->AtMYB61 --ALFIN1    --------->MYB46(3)------->GAMYB            --------->MYB46(3)     <---------ATHB12  <---   ttattgcaacccacaacgatcattcttcatcaaccacagctctcaccattgctcttgcaccgccagcgctttgttcatcaaatcaacaccaacagtccaa  16506400  Previous    Next  AGI:  At1g43725.1    Description:  transposable element gene. copia-like retrotransposon family, has a 1.2e-107 P-value blast match to dbj|BAA78425.1| polyprotein (Arabidopsis thaliana) (AtRE1) (Ty1_Copia-element) Range:  from: 16505876    to: 16509908    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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