Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------YAB1                                                                            --------->LBD16      <---------YAB1                                                       --------->HSFB2a(2)    --------->GLK1(1)                                                      <---------HSFB2a(2)    <---------GLK1(1)                                                <---------ATHB12   --------->ARR11(3)                                               <---------RAP2.6(3)   <---------ARR11(3)       ------>ZmHOX2a(1)                   xxxxxxxxxxxxxxxx>smallRNA(i) ------->LBD16      <---------ANAC46                          <---------ANAC58    ----------->HVH21 ------LBD16--------->TOE2(3)                                 <---------ANAC58<------ZmHOX2a(1)  <--- ----ARR14(2)------>ZmHOX2a(1)                             <----------DOF2 <---------LBD16     <-----   ccggagatatcattccttagtctcgtagtcctgaagtttgagaaaaactttgccaagaaggctttcttgcagtcattccaggatgtgatagagccttgag  15509500                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 ----                                                                                          <<<<<<<<<MYB98                                                                                          <---------MYB52(1)                                                                                      <----------DOF2                                                                                   --------->ARR11(3)     <----------DOF2      ---------->ID1                                           <---------ARR11(3)     <---------DAG2   <----------DOF2           --------->GLK1(2)   ========================HOX2a_HOX2a ---ZmHOX2a(1) --------->ATHB12                 <xxxxxxxxxxxxxxxxsmallRNA(i)      xxxxxxxxxxxxxxxxxxx ----TOE2(3)  ----------->HVH21          ----------->GT1            ------>ZmHOX2a(1)------>ZmHOX2a(2)   gaagcgacttttcccactgataggctttgtctccaagagagaatggaaacaatctgagcttgaagccatcctcactagctccattgatctttgttaggct  15509600                                   ------>ZmHOX2a(2)         xxxxxxxxxxxxxxxx>smallRNA(i)                                  <------ZmHOX2a(2)          ---------->ID1                                 <---------ARR14(2)        <-----------RAV1(1)                                 --------->ARR14(2)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                 --------->ARR11(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               ----------->ARR10    --------->ALFIN1        --------->YAB1      <---------ANAC46       --------->LBD16 ------ZAT14                <XXXXXXXXXXXXXXXXXXXXMIR862-3P<xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------At4g35610          ------>ZmHOX2a(2)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)             -- ----->At4g35610          ==================HOX2a_HOX2a  xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xx ---NtERF2          --------->At4g35610           <---------ANAC58                               xxxx ------ZAT2         <---------At4g35610           <---------ANAC46                              xxxxx ----->ZAT14      <-----------RAV1(2)------>ZmHOX2a(1) <---------ARR14(2)                       ----- x>smallRNA(le3)------>NtERF2 --------->ALFIN1    <---------ANAC58                            <------   gcagagcctatcaaactcggccagatgatcgagtggatcctgcatagggaggccgtggaacttgttgctctgaaccatggcattgagaccgctcttgatc  15509700                                                        --------->ALFIN1                                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                      <---------AtLEC2                                                      <---------ANAC58                                                      <---------ANAC46                                                      --------->ANAC55(2)            <---------ANAC58                                                      <---------ANAC55(1)            <-------GAMYB                                                   <--------P                       <------MYB46(1)                                                  <-------GAMYB                     <---------MYB46(3)                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                 <---------MYB46(3)                --------->MYB59                                                <---------TOE2(3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                <---------YAB1         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<------MYB83                         <------NtERF2    <---------YAB1xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         ------->TEIL<---------AtMYB61                        <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        xxxxxxxxxxxxxxxx>smallRNA(i)                       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)      ----------->RAV1(2)<---------ANAC58                    --------->ALFIN1    <---------At4g35610     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                 <-----------RAV1(1) xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <-----------RAV1(1)             <---------ZAT14      xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)<---------ATERF1(1)            <x    <---------MYB46(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) <-------TEIL   <---------TOE2(2)    xxxxx -------->DOF2   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------ANAC58<---------ALFIN1      <-------PIF5 xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxxxxx>smallRNA(i2) ------>NtERF2 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ->ZmHOX2a(2)--------->ZAT18   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ---ARR11(3) --------->ZAT14 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)======================RAV ------->PIF5   tcaaagttgttgttctgcactggtggaggcacgatgccattacgctgattgtggttgcgtggtgcatcgcctgcacctatgttgtttggttgcacttgct  15509800                                                                                             <-------                                                                                             <-------                                                           ===========================HOX2a_HOX2a               <---------MYB52(1)              <---------ANAC58                          --------->GLK1(1)              <---------RAP2.6(3)              <---------ANAC46                       xxxxxxxxxxxxxxx           ------>NtERF2                       <---------ANAC58                    --------->GLK1(2)           <---------At4g35610                <------NtERF2<------ZmHOX2a(2)      <---------GLK1(2)        --------->At4g35610                 <---------DEAR3(1)                    --------->ARR14(2)        --------->ZAT14            <---------ZAT14--------->ZAT18               ----------->ARR10       ------->GAMYB               --------->ZAT14<---------------------WRI1   <------ZmHOX2a(1)   --------->REM1(1)               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       ====================== xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <-----------RAV1(2)  <--- xxxxxxxxxxxxxxxsmallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->WRKY12 <---------GLK1(1) xxxxxxxxxxx>smallRNA(s)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------YAB1<---------ARR14(2) x>smallRNA(fl3)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <---------TOE2(3) <---------YAB1   catctacaactgcagccgttttgtctgtttctgtctgtgttctgagttggcgtgcaatacgatcgatgttatcgttgaacaggagattctgatttccttg  15509900                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <---------At4g35610                                  <---------ZAT2                                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              <---------REM1(1)                         ------>MYB83               *TSS      -------->P  ----------->GT1     <----------DOF2     ------>MYB46(1)<---------MYB46(3) ------>ZmHOX2a(2)     --------->MYB46(3)     --------------->AtSPL8                            ----- --ANAC58     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                 ----------->GT1 --ANAC58    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->MYB52(1)      <------- x>smallRNA(i)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----------->RAV1(2)           ---------->DOF2<---- =======HOX2a_HOX2axxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->YAB1----------->GT1   <---------AHL20(2) ------YAB1 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   <----------   tgatcgtctttgcatacaacgagtaccaactggtgaagctggtgattcgcagtacctgaatcaaaacagacaaacagaaaaaacaaagttattaactttc  15510000                                                                          --------->DEAR3(1)                                                                         --------->RAP2.3(1)                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                        <---------RAP2.3(1)                                                                        ------->GAMYB                                                                        <---------ATERF1(1)                                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                      xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                     xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                     --------->MYB52(1)                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                           --------->ANAC46                                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           --------->ANAC58 <------NtERF2                                                           --------->ANAC58------>NtERF2                                                          <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   --------->GLK1(1)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                   <---------GLK1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)                     ------>ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->YAB1             --------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------DEAR3(1) ---->HSFB2a(2)    <---------ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ----------->GT1 ---DOF2     <---------ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) -----HSFB2a(2)    --------->ARR11(3) --------->TOE2(3) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) -GT1    ---------->DOF2     --------->GLK1(2)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------YAB1   agaaaaaatgaaaaagaacttgatcttaaatattctgaaatctcaaatatagcaaacaaacacccaattggcaacggcgccaaattgataataggtttta  15510100                                                                        --------->At4g35610                                                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                     <xxxxxxxxxxxxxxxxsmallRNA(s)  xx                                                                --------->AtLEC2                   --                                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <xx                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xx                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    xxxxx                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <xxxxxx                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <xxxxxxx                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       <xxxxxxx                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxx                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       xxxxxxxxxx                                               --------->WOX13(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                             xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxx              --------->MYB46(3)             xxxxxxxxxxxxxxxx>smallRNA(i)              xxxxxxxxxxxxxx          ------>ZmHOX2a(1)                 <-----------HVH21--------->ALFIN1         xxxxxxxxxxxxxxx         --------->TOE2(3)                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <xxxxxxxxxxxxxx  --------->ANAC58                        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxx  --------->ANAC55(2)      <-------GAMYB <---------ANAC58<---------ANAC58          xxxxxxxxxxxxxxxxxx  --------->ANAC58   --------->YAB1      <---------ANAC58<---------ANAC58          <xxxxxxxxxxxxxxxxx  --------->ANAC46 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxx   gttcaagtaatcctaaaccactatcatgtcgttgtagtacttagggtgtcaatccaaatgggtgtgatgcaaacagatgagatgtgatcagaagtcacta  15510200             --------->YAB1             --------->MYB52(1)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------ATHB12       --------->ANAC46       --------->ANAC58       --------->ANAC58       --------->AtLEC2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     xxxxxxxxxxxxxxxx>smallRNA(s)     <xxxxxxxxxxxxxxxxsmallRNA(i)    <xxxxxxxxxxxxxxxxsmallRNA(i)  --------->ANAC58  --------->ANAC58 xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------->WRKY18(1) xxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxsmallRNA(i) xxxxxxxxxsmallRNA(s) xxxxxxxxxsmallRNA(i)                                                                             --- xxxxxxx>smallRNA(i)                                                                            xxxxx xxxxxx>smallRNA(i)                                                                            <xxxxx xxxxxxxsmallRNA(i)                                                                            ------ xxxxxxxxx>smallRNA(le3)                                                                     <xxxxxxx xxxxxxxx>smallRNA(fl3)                  --------->HSFB2a(2)                                 <xxxxxxx xxsmallRNA(i)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                     --------- xxxxxxx>smallRNA(se3)                  --------->ANAC46           --------->MYB52(1)     <xxxxxxxxxx xxxx>smallRNA(si3)               ------->GAMYB                 <---------ICU4          xxxxxxxxxxxxx xxxxxsmallRNA(fl3)              --------->ZAT6           ----------->GT1              xxxxxxxxxxxxxx xxxxxxxxxsmallRNA(fl3)   --------->GLK1(1)     --------->AtLEC2--------->YAB1 ---------->DOF2xxxxxxx   agtcaagccaagcaataacagttttggggtttctaacagtctacgcgaacatgcagaaaacagaaataataacagaattactaaagtcactcgaccacaa  15510300                     <---------AtMYB61                     --------->ALFIN1                   xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        <---------HSFB2a(2)        --------------->AGL15       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       ----------------->AGL2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          --------->CCA1(2)     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)          <---------ARR14(2)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)     --------->MYB46(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<xxxxxxxxxxxxxxxxsmallRNA(i)   <---------At4g35610                <xxxxxxxxxxxxxxxxsmallRNA(i)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  --------->MYB52(1)   --------->At4g35610               <xxxxxxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)            --------->ZAT14  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxx>smallRNA(i)       --------->ZAT18 ---->GAMYBxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)------->GAMYB     <---------ARR11(3) xxxxxxxxxxxxxxxxxx>smallRNA(le3)   <xxxxxxxxxxxxxxxxsmallRNA(i)           <---------ZAT14 xxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxxsmallRNA(s)--------->CCA1(2)              xxxxxx ----->RAV1(1)   <------ZmHOX2a(1) <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ARR14(2)            xxxxxxxx xxxxxxxxxxxxxxxsmallRNA(i2)       xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      --------->ZAT14xxxxxxxxxxx xxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxsmallRNA(i)   <---------ARR14(2)         --------->ANAC46 >AtMYB61xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      <---------ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxsmallRNA(si3)  ----------->HVH21      --------->ARR14(2)<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxxxxxxxxxxxxxx>smallRNA(i)   - xxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  --------->ARR11(3)  <----------DOF2<-- xxxxxxxxxxxxxxxx>smallRNA(i2)--------->MYB52(1)   <------ZmHOX2a(1)--------->ANAC46     xxxxxxxxxxxx   caggctgatgccagaagtaggatgtggtcgagtaacaggtcgagtaacagacaggatatgaaacagatatactcgactgcacagtcttttgccagacact  15510400  Previous    Next  AGI:  At1g41730.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.7e-253 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 15507359    to: 15509915    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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