Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                          --------->ANAC58                          --------->ANAC58                         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                     ----------->HVH21              <---------ZAT6                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                        <xxx                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                --------->YAB1          ------                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             <---------YAB1          -------                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------WOX13(1)          <------                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          --------->ATHB12              -------                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <---------AHL20(2)             <------         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------YAB1   --------->AHL20(2)           ---------   <---------AtLEC2 <---------WOX13(1)    ------->GAMYB     <------ZmHOX2a(1)         <---------YAB1 ----At4g35610   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)     <---------TOE2(3)         --------->YAB1   tgtttgcatcacactcatttggattgacacctaaaatactacaacgacatgatagtgttttaggattaattgatcataaaaacctattatcaaggagata  14494100                                                                                            <--------                                                                                         <xxxxxxxxxxx                                                                                       <xxxxxxxxxxxxx                                                                                   ------>ZmHOX2a(2)                                                                                   xxxxxxxxxxxxxxxxxx                                                                               ----------->HVH21                                                                             --------->bZIP60(1)  ---                                                                             <---------bZIP60(1)<----                                                                             <---------ANAC46 <------                                                                           <---------ZAT14  xxxxxxxxx                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)      <-----------RAV1(2)                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) xxxxxxxxxxxxxsmallRNA(i)                                            <xxxxxxxxxxxxxxxxsmallRNA(i) --- --->CCA1(2)        <---------AtMYB61       ---------->DOF2         xxxxxxxxxxxxxxxx>smallRNA(i)----- -->ARR14(2)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <-----------HVH21 xxxxxxxxxxxxxxx ---ARR14(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)               <xxxxxxxxxxxxxxxxsmallRNA(i)<---- -->ARR11(3) <---------ANAC58             <---------YAB1           xxxxxxxxxxxxxxxx>smallRNA(i) ----- ---ARR11(3) <---------ANAC58        ----------->GT1            <---------LBD16xxxxxxxxxxxxxxxxxxxxxx -->ARR10    <---------ANAC46  <---------AtMYB61               <---------LBD16xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   ctcgacttccaggttgagtgatgaggtcgagtagtggtctggtaatgaaagtgaagacactcgacttcggggtcgagtgatgtgatcgagtgatggtcag  14494200                                                                                            =========     <---------At4g35610                                                                    <------ZmHOX2a(2)     --------->At4g35610                                                                   --------->ARR14(2) ---HVH21                                                                                  --------->ARR14(3) xxxxxsmallRNA(s)                                                                          <---------ARR14(3) xxxxxxxxxxsmallRNA(se3)                                                                   --------->ARR11(3) xxxx>smallRNA(fl3)                                                                        <---------ARR11(3) ------>ALFIN1                                                               <---------ANAC46======== -----ANAC55(2)                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------AtMYB61   <- -----RAV1(2)                          <---------At4g35610                  <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxx>smallRNA(si3)          --------->At4g35610                <xxxxxxxxxxxxxxxxsmallRNA(s) -------->HVH21                        <---------ANAC46             --------->ALFIN1       <---------ARR14(2) ---->ANAC55(2)                       <---------AtMYB61           <---------ZAT2           --------->AGP1 xxxxxx>smallRNA(i2)                 xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3) <xxxxxxxxxxxxxxxxsmallRNA(i) -----At4g35610                  --------->ALFIN1                 ----------->RAV1(2)  <xxxxxxxxxxxxx ---->At4g35610                <---------ANAC46                   --------->ZAT2<xxxxxxxxxxxxxxxxxxxx >smallRNA(fl3)   <---------ALFIN1<---------MYB46(3)             <xxxxxxxxxxxxxxxxsmallRNA(s)------>ZmHOX2a(2)   gtgatggagatgaagatgctcgacctcgtggtcgagtggtgaggtgaagttgtgatgtcttctactcgacctgggggtcgagtggtctcttgagatcttg  14494300                                                                                                  <--                                                                                                  ---                                                                                              xxxxxxx                                                                                              -------                                                                                             --------                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)             ----------->RAV1(2)   <---------YAB1                                 --------->At4g35610    ------>ZmHOX2a(1)            --------->YAB1       <---------HSFB2a(2)         ----------->RAV1(2) ==========HOX2a_HOX2a          xxxxxxxxxxxxxxxx>smallRNA(i)                      <---------At4g35610 ==========HOX2a_HOX2a   <---------MYB46(3)   <------NtERF2            --------->At4g35610   -------- --------At4g35610    <---------ANAC46        <---------At4g35610      <---------At4g35610   -------- xxxxxxxxxsmallRNA(se3) <---------AtMYB61   <---------RAP2.6(2)      --------->MYB46(3)--------->GLK1(1) xxxsmallRNA(s2)  <-----------HVH21--------->ICU4     --------->HSFB2a(2)      <xxxxxxxxxxxxxxxxsmallRNA(s)   aagctcctactctacctctgggtcgagtggttttgtcatgatcagggccgcttcttccagatagctcttcaacagctccaaatcacctgaaatcaacgca  14494400                                                                                       xxxxxxxxxxxxxx                                                                                       xxxxxxxxxxxxxx                                                --------->ICU4                         xxxxxxxxxxxxxx    ----------->RAV1(1)                     <---------YAB1                             xxxxxxxxxxxxxx -------ARR14(2)                         --------->ICU4                                --------->DAG2 ------>ARR14(2)                   --------->DAG2  <---------YAB1                     xxxxxxxxxxxxxxx xxxxxxxxxxxxx>smallRNA(se3)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)           <---------YAB1  xxx >GAMYB --------->AtLEC2 ------>ZmHOX2a(1)--------->YAB1                     --------->CCA1(2)   xxxx ->ANAC58  ------->TEIL --------->TOE2(3)----------->GT1                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ->ANAC46 <---------AtLEC2        ---------->DOF2--------->YAB1           <---------YAB1    xxxxxxxxx ->ANAC58<-------TEIL   --------->TOE1(3)<---------YAB1                 --------->YAB1---------->DOF2   aatatgcaacatgcatgtaaatctatcctaaacatataaagtgatgataaatgatgagaaatagtatgaaatagtgatgatatgatgctaaagtgatgac  14494500                                                                          --------->ANAC46                                                                        <---------ALFIN1               --------->ANAC58                                   <---------ARR14(2)               --------->ANAC58                                   --------->ARR14(2)   *TSS        --------->AtLEC2                                   ------->TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                           <---------CCA1(2) xxxxxxxxx>smallRNA(si3)                                  ===================HOX2a_HOX2a xxxxxxxxx>smallRNA(i2)                                   <------ZmHOX2a(2) xxxxxxxxx>smallRNA(se3)                            =============HOX2a_HOX2a    --------->REM1(1) xxxxxxxxx>smallRNA(le3)                            ------>ZmHOX2a(1) ------>ZmHOX2a(1)       ------- xxxxxxxx>smallRNA(si3)                ------>MYB83--------->TOE2(3) --------->ANAC46  --------->TOE2(3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     ------>MYB46(1)    xxxxxxxxxxxxxxxx>smallRNA(i) --------->TOE1(3) xxxxxxxxxxxx>smallRNA(se3)          --------->DEAR3(1)  --------->ARR11(3)     --------->MYB46(3)  < xxxxxxxxxxxxxx>smallRNA(si3)       --------->MYB46(3)   <---------ARR11(3)   ----------->RAV1(1)  <-   aaatggatgctcaaaacatgcaaaaatacacacttatcaccaacgttgctaatcctcaagatcaagtgtatcctccacagcaacaacaacgttagaacaa  14494600                                                                      <---------ZAT2                                                                      --------->ZAT2                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                                    --------->AtMYB61                                                                    --------->DEAR3(1)                                                                    <---------ALFIN1                                                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   --------->MYB46(3)                                                                 <---------ALFIN1                                                                 --------->DEAR3(1)                                                                 --------->AtMYB61                                                                --------->MYB46(3)                                                               ------>NtERF2                                                              --------->DEAR3(1)                                                             --------->ERF1                                                             <------NtERF2                                                             --------->ATERF1(1)                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                            <---------RAP2.6(3)                                                            ------>NtERF2                                                           <---------ATERF1(2)                                                           --------->RAP2.3(3)                                                           --------->RAP2.6(2)                                                           --------->ATERF1(2)                                                           --------->RRTF1(2)                                                           --------->RAP2.3(2)                                                           --------->DEAR3(1)                                                           ------->GAMYB                                                           --------->ANAC58                                                          --------->MYB46(3)                                                          --------->RAP2.3(1)                                                          --------->ERF1                                                         ------>MYB83 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         <---------At4g35610                       <x                                                         <---------ATERF1(1)                      <--                                                         --------->ZAT2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                         ------>MYB46(1)                        xxxxx                                                         --------->At4g35610               xxxxxxxxxx                                                        --------->ANAC46                   xxxxxxxxxx                                                        --------->MYB55(1)                 <xxxxxxxxx                                                       <xxxxxxxxxxxxxxxxsmallRNA(i)    --------->At4g35610                                                       --------->MYB46(3)              <---------At4g35610           ---------->DOF2       --------->At4g35610 -------->P<---------ATERF1(1) --------->AtMYB61x         ------>ZmHOX2a(1)      --------->ANAC46     --------->MYB52(1)<xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ANAC58    --------->YAB1         --------->MYB46(3) ----------->RAV1(2) xxxxxxxxxxx        <---------ANAC58<---------ANAC58     --------->LBD16<---------ATERF1(1)   <xxxxxxxxxxxxxxxxxx     ---------->ID1     <---------ANAC46    <---------LBD16--------->ANAC46       --------->ANAC46--- -->MYB46(3)            <---------ANAC58    --------->LBD16--------->ANAC58       <xxxxxxxxxxxxxxxxxx ----------DOF2   <---------TOE2(3)        <-----------RAV1(2)<---------ALFIN1   ------->TEIL  xxxxxx --------DAG2  xxxxxxxxxxxxxxxx>smallRNA(i)<---------LBD16--------->RRTF1(1)     xxxxxxxxxxxxxxxxxxxx   accttttgttccttacagccaaggtttcgttcataagcagcaattccaggggaactaccagccgccaccaccacctgggtttgcacctcagcaaaaccaa  14494700               --------->At4g35610               <---------At4g35610           ------>ZmHOX2a(1)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)         ----------->RAV1(2)      <---------At4g35610   <---------ZAT2   <---------At4g35610  <-----------RAV1(1)  ------>ZmHOX2a(1)  ===================RAV <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxsmallRNA(i) -------ARR11(3) xxxxxxxxxxx>smallRNA(s) xxxxxxxxxx>smallRNA(le3) xxxxxxxxxx>smallRNA(fl3) xxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                --- xxxxxxxxxxxx>smallRNA(se3)                                                                     ----- xxxxxsmallRNA(se3)                                       --------->ARR11(3)            --------->At4g35610 ------>ARR11(3)                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  <xxxxxxxx xxsmallRNA(si3)                            ----------->HVH21                     --------->AHL20(2) xxxxxxxxxx>smallRNA(s)                    <-----------HVH21                      <---------AHL20(2) xxx>smallRNA(i2)                 <-------TEIL    <----------ID1         <---------GLK1(1) <xxxxxxxxx   ggtcctgctgctcctgatgctgaaatgaaacagaggtacaatagctgttacagggacaaacatctagctcaatggaaattccaaaaaattatctgaattg  14494800                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->At4g35610                                                             <----                <---------At4g35610                                                       -------->P             <---------At4g35610                                                          ------->TEIL     --------->At4g35610  --------->At4g35610                                          --------->At4g35610     --------->ZAT2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                               <xxxxxxxxxxxxx  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                               <xxxxxxxxxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <------NtERF2                        --------->YAB1----- -------->RAV1(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                            <xxxxxxxxxxxxxxxxxx ---->ZAT18  <---------ZAT14            --------->ALFIN1                         <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxsmallRNA(se3)         ---------->DOF2      ---------->DOF2         <---------ATHB12 xxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxsmallRNA(i)                     --------->WOX13(1) ---   caccataagctggactgcagctacaatgacctgaatgccaaagtggaggcattgaataccaaagtcagatagttggaaggccaatcagcatctacctctg  14494900                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                 >>>>>>>>>AtERF-4       --------->MYB52(1)                                                                 >>>>>>>>>AtERF-3       <-----------GT1                                       --------->ANAC46           <---------At4g35610  ---------->DOF2  ------>ZmHOX2a(1)                         --------->ANAC58           --------->ZAT2 -----ZAT14       --------->TOE1(2)                          --------->ANAC58           <---------ZAT2 xxxxxxxsmallRNA(fl3)                            --------->ANAC58               <------ZmHOX2a(1) xxxxxxxsmallRNA(le3)   ----------->GT1          --------->ANAC58       --------->At4g35610    ------ ---->ZAT14      ----------->RAV1(2)    ---------->DOF2 --------->At4g35610    ----------->HVH21 <xxx xxxxxsmallRNA(fl3)--------->LBD16  --------->GLK1(2)<---------At4g35610<---------At4g35610   xxxxxxx xxxxsmallRNA(fl3)<---------LBD16   --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>NtERF2 ---->TEIL  <------ZmHOX2a(1)      <---------GLK1(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------->At4g35610   cacctaaagtaacaggacttcctgggaagtcaatacagaatccaaaggagtatgcaactgctcacgccatcaccatctgccaggaccgagagctgccaac  14495000  Previous    Next  AGI:  At1g38450.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 9.8e-50 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 14494503    to: 14498255    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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