Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                ----------->HVH21                                       <-----------RAV1(2)                                       --------->HSFB2a(2)                     --------->ATHB12                                       <---------LBD16                        xxxxxxxxxxxxxxxxxxxxxxx                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------DAG2                                --------->At5g28300                  <----------DOF2      ---------->ID1                          <---------ANAC58   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <----------DOF2                          <---------ANAC58<------ZmHOX2a(1)  <------ZmHOX2a(1)----------->HVH21                       <----------DOF2 <---------HSFB2a(2) <---------TOE2(3)  <---------ATHB12   tttgagaaaaacttagccaagaaggctttcttgcagtaattccaggaggtgatagagccttgaggaagcgacttttcccactgatgggctttgtctccaa  13946500                                                                                                   --                                                                                                   <x                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                                 ----                                                                                                 <---                                                             --------->ZAT14                   ------                                                             <---------At4g35610              -------                                                             --------->At4g35610            <--------                                                             <------NtERF2                ===========                                                             <---------ZAT14              ------>ZmHOX2a(2)                                                             <---------ZAT2         <---------At4g35610                                                      <---------MYB52(1)            xxxxxxxxxxxxxxxxx                                                      <<<<<<<<<MYB98              <-----------RAV1(2)                                                  <----------DOF2                xxxxxxxxxxxxxxxxxxxx                                                 ------>ZmHOX2a(2)      --------->YAB1----------->HVH21            --------->GLK1(2)                  --------->ARR11(3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)            <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     ----------->GT1            --------->ZAT18<---------ARR11(3)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) >smallRNA(se3)              --------->AtLEC2 xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(i)   gagagaatggaaacaatctgagcttgaagccatgctcactaactccattgatctttgttaggctgcagagcctatcaaactcgtccaggtgatcgagtgg  13946600                         xxxxxxxxxxxxxxxx>smallRNA(i)                               --------->ALFIN1 ------>ZmHOX2a(1)       ---------->ID1                                           xxxxxxxxxxxxxxxx>smallRNA(i) ---->ZmHOX2a(2)       <-----------RAV1(1)                                       <xxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                             <xxxxxxxxxxxxxxxxxxx ----ZmHOX2a(2)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->ZAT14 ----->ARR14(2)      xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------ARR11(3)  xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ----->ARR11(3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ------ARR14(2)--------->LBD16                                      <---------MYB46(3)   <------NtERF2 ----->ARR10  <---------ANAC58                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) -->ALFIN1    <---------ANAC46                                 ---------->DOF2  <-----------RAV1(2) -ANAC46      <---------ANAC58                               xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) =======HOX2a_HOX2a  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) xxx>smallRNA(si3) <---------ARR14(2)                     <---------ARR11(3) <---------ZAT14 x>smallRNA(le3)--------->ALFIN1             --------->YAB1 ------>ZmHOX2a(2)--------->ZAT18    -----   atcctccatagggaggccgtggaacttgttgctctgaaccatggcaataagaccgctcttgatctcaaagttgttgttctgcacaggtggaggcacgatg  13946700                                                 <-------GAMYB                                                 <---------ANAC58                                   ------->TEIL <------MYB46(1)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <---------ATERF1(1)                                xxxxxxxxxxxxxxxx>smallRNA(i)                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                     <---------ANAC58           <------MYB83                     <---------ANAC58           <---------MYB46(3)                     <---------ANAC46          --------->MYB59                    <---------AtMYB61       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                    --------->ALFIN1    <-----------RAV1(1)                  <-----------RAV1(1)  <---------TOE2(2)              <-------GAMYB   ----------->RAV1(2)<---------ANAC58             <---------MYB46(3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <xxxxxxxxxxxxxxxxsmallRNA(s)            <---------YAB1  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)          --------->RAP2.6(2)       --------->ATHB12 <-------TEIL xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)--------->At4g35610  <---------ZAT14 ========================RAV  <---------AtMYB61   --------->REM1(1)  --------->ZAT14 <---------ANAC58 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------At4g35610 xxsmallRNA(fl3)  <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ZAT2 xxsmallRNA(le3)  <---------ANAC46<---------ALFIN1      <-------PIF5   ------->GAMYB ->NtERF2   <---------TOE2(3) ======================RAV ------->PIF5----------->RAV1(1)       <------   ccattacactgattgtggttgtgtggtgcatcgcctgcacctatgttgtttggttgcacttgctcatctacaacagcagccattgtgtctgtttctgttt  13946800                                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                             ----------->HVH21               xxxxxxxxxxxxxxxxxxxx>smallRNA(s2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           <---------ANAC58                                <---------O2           <---------ANAC46                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)           <---------ANAC58                                --------->O2         <------MYB83                                     ------>ZmHOX2a(1)         <------MYB46(1)<---------MYB46(3)           --------->GLK1(1)        <---------MYB46(3)          --------->WRKY12 <---------GLK1(1)                       --------        <---------AtMYB61       <---------YAB1 --------->GLK1(2)                          <----------DOF2     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <---------GLK1(2)                *TSS ----------->GT1 < ---MYB52(1)  --------->ZAT18   <---------TOE2(3) <---------YAB1              ---------->DOF2<-------   gtgttctgagttggtgtgcaatacggtcgatgttatcgttgaacaagagattctgatttcctcgtgaccgtgtttgcatacaaagttagtaactttcaga  13946900                                                                       --------->DEAR3(1)                                                                      --------->RAP2.3(1)                                                                      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                                     <---------ATERF1(1)                                                                     <---------RAP2.3(1)                                                                     ------->GAMYB                                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                  xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  --------->MYB52(1)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                                            <------------CBF                                                         ------------>CBF                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                        --------->ANAC58                                                        --------->ANAC46 <------NtERF2                                                        --------->ANAC58------>NtERF2                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                --------->GLK1(1)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <---------GLK1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)          --------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------DEAR3(1)          <---------ARR11(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)      ---------->DOF2 --------->ANAC55(2)    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------YAB1 ->HSFB2a(2)      ------>ZmHOX2a(2)          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) --------->YAB1 ------------CBF--------->ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     ----------->GT1 --HSFB2a(2)    <---------ARR11(3) --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <   aaaattgaaaaagaacttgatcttaagtattctgaaatctcaaatatagcaaacaaacacccaattggcaacggcgccaaattgataataggtttttgct  13947000                                                        --------->ALFIN1                                                        <---------AtMYB61                                                       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                      --------->ALFIN1                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                              xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                             xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                  --------->YAB1             <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            --------->ZAT6                  --------->ANAC46    xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)        ---------->DOF2                     xxxxxxxxxxxxxxxx>smallRNA(s)         --------->YAB1       ------>ZmHOX2a(1)                   xxxxxxxxxxxxxxxx>smallRNA(i)          ----------->GT1 --------->AHL20(2)                       xxxxxxxxxxxxxxxx>smallRNA(i)<------MYB46(1) <---------AHL20(2)     <-------GAMYB--------->MYB52(2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------ATHB12<xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------ANAC46  <------MYB83   caattaatcctatagcactatcatgtcgttgtagtattttagttgccagacactgggtgtggtcgagtaagttggtcgagtaattgtaaaaactaagaaa  13947100                                                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                       <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                   xxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                  --------->ALFIN1                                                                <------ZmHOX2a(1)                                                              <---------TOE2(3)       xxxxxxxxxxxxxxx                            ---------->DOF2                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         --------->TOE1(3)             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         --------->TOE2(3)            xxxxxxxxxxxxxxxx>smallRNA(i)<---------ANAC46                        ----------->GT1               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>ZmHOX2a(1)                        <----------ID1              xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxxxxxx                       <---------TOE2(3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) <xxxxxxxxxx                      <---------DOF5.7(2)           xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxx                    --------->DOF5.7(2)           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  xxxxxxxxxxxx                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)   ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)xxxxxxxxxx              ---------->DOF2             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------ZAT14   <--      <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->AHL20(2) xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxx     --------->YAB1 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)     ---   cagacaatgagaacgattaagcgataacgataaaacagagaaataatatagacgagaaattcctaaggatggggtaatcgagtagagtggtatcctagcc  13947200                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                        --------->ANAC58                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                     <---------ATHB12                    --------->ANAC58                    <------ZmHOX2a(2)              --------->MYB52(1)                      --------->At4g35610            --------->MYB46(3)                     <---------At4g35610               <xxxxxxxxxxxxxxx            <---------MYB52(2) <xxxxxxxxxxxxxxxxsmallRNA(i)                          --------->ANAC46      ----------->GT1<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                          xxxxxxxxxxxxxxxxxx xxxxxxxx>smallRNA(se3) --------->ANAC58           --------->At4g35610       <---------GLK1(1) xxx>smallRNA(si3)  --------->ANAC58              ----------->RAV1(1) <---------YAB1 --------->ANAC58 xxxxxxxxxxxxxsmallRNA(s2)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------ANAC46 --------->ANAC58 x>smallRNA(si3)   --------->WOX13(1)           --------->At4g35610 <---------ANAC58<xxxxxxxxxxxxxxxx xxxxxxxxxxx>smallRNA(si3)  xxxxxxxxxxxxxxxx>smallRNA(s)=================================HOX2a_HOX2a xxxxxxxxxxx>smallRNA(i2)xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)       --------->ANAC55(2) ---------->DOF2 -------ARR14(2)--------->ANAC58                <---------At4g35610 <---------ANAC58<xxxxxxxxxxxxxxxx xxx>smallRNA(s)--------->ANAC58             <-------TEIL        <----------DOF2  ------>ZmHOX2a(1) ------>ARR14(2)--------->ANAC46<xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------GT1--------->GLK1(1)   tattcgaatggttaacaaacgcaatcaagctatccctagacaacaggttcagcagcagatcaattcactttcgtgatagaattcctcaagcaaagctagc  13947300          <---------------AGL15          --------------->AGL15         ----------------->AG <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)         <-----------------AGL1        --------->YAB1  ----------->GT1              <xxxxxxxxxxxxxxxxsmallRNA(i)         ----------------->AGL3       <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)      xxxxxxxxxxxxxxxxxxxx         ----------------->AGL2  --------->ANAC46     --------->DAG2            <---------ARR14(2)         --------------->AGL15<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)         <-----------------AGL3  --------->ANAC58     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)         <-----------------AGL2  --------->ANAC58    ---------->DOF2    --------->MYB52(1)       ----         ----------------->AGL1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------REM1(2)         ---- xxxsmallRNA(si3)           <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxx>smallRNA(si3)       xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxsmallRNA(fl3) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)      <-----------GT1 <xxxxxxxxxxxxxxxxsmallRNA(i)   ccagactagttcccattaatggaatctaactatgcaggcaataagaacagactgataaagtcaataaacgctctaaacggccaatcccttgggatagaga  13947400  Previous    Next  AGI:  At1g36795.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 2.9e-245 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13944011    to: 13946879    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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