Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             ==========================HOX2a_HOX2a                                                           ------>ZmHOX2a(2)                                                          <------ZmHOX2a(2)                                                          ===========================HOX2a_HOX2a                                                         --------->ARR11(3)                                                         --------->ARR14(2)                                                         <---------ARR14(2)                                                         <---------ARR11(3)          --------->ATHB12            --------->YAB1     <---------AGP1       --------->YAB1      <---------MYB46(3)   <-----------GT1         <---------ICU4    --------->YAB1   --------->HSFC1(1)    ======================HOX2a_HOX2a  --------->LBD16   <---------YAB1    --------->HSFB2a(2)   ------>ZmHOX2a(1)         --------->YAB1 ----ARR14(2)        <---------HSFC1(1)    =======================HOX2a_HOX2a ------>ZmHOX2a(1) ----- ----MYB52(1)        >>>>>>>ZML2   --------->YAB1<---------At5g28300<---------YAB1              ----- --->ARR14(2)        <---------HSFB2a(2) --------->YAB1  --------->AGP1<---------YAB1      ----------   actctataatagtgatttgagttctagaatggttcgataataatcctaatttactgctagatctactagtctgataattcctgagaatttccctaaaccc  13937000                                 --------->AHL20(1)                                 <---------AHL20(1)                <-----------GT1                                 --------->AHL20(2)             --------->ARR11(3)                                 <---------AHL20(2)             <---------ARR11(3)                          ------>MYB83                          <---------AHL20(1)                          ------>MYB46(1)                       --------->AHL20(1)        <---------ICU4--------->ANAC58           <----------DOF2<---------ICU4        --------->ATHB12 --------->WOX13(1)    ---------->ID1 <---------AHL20(1)        <--------HAHB4--------->ANAC58  <----------DOF2       <---------AHL20(2)     <-----------GT1  --------->ANAC46 <---------ANAC58   --------->YAB1 ------>HVH21       --------->REM1(1)  <---------ANAC58<----------DOF2                    ----------- ---->ANAC46   ------->TEIL<---------ATHB12<---------ANAC58  --------->YAB1   <---------DAG2<-------- >DOF2 <---------ATHB12--------->MYB46(3)  <---------ANAC58 <---------YAB1    <----------DOF2   gacgttttaatcatttgaatctacaaccaatctattttattgctttcttgtcttttacttttataatattttctgtttagctttattcgaaattgttatt  13937100                 <----------DOF2              <---------ARR11(3)                                              --------->YAB1           --------->LBD16                                                    <------ZmHOX2a(1)           --------->HSFB2a(2)                                               ----------->GT1   <---------ANAC58                                <---------ARR11(3)        <---------YAB1   <---------ANAC46                          --------->YAB1               --------->ICU4    ---------   <---------ANAC58                    <---------ZAT6                   <---------ICU4    <---------ALFIN1 >GT1      <---------HSFB2a(2)     <---------MYB52(1) <----------DOF2   --------->ATHB12  --------->ANAC58 -YAB1   ------>ZmHOX2a(2)     <------ZmHOX2a(2)   --------->ARR11(3)  --------->ICU4     --------->ANAC58   ctattgtgtgatccgagaactttgtggaattcgatcccttagtgctataacaacatctttgtttgagagagtagtcattaggataatttgacacacatca  13937200                  --------->ARR11(3)            <---------HSFB2a(2)         <---------MYB52(1)         --------->ATERF1(1)       --------->DEAR3(1)      --------->RAP2.3(1)      --------->ATERF1(1)      <------NtERF2     ------>NtERF2<---------ARR11(3)     <---------RAP2.3(1)                     <---------REM1(1)             <----------DOF2    <---------DEAR3(1)        <-----------GT1--------->ALFIN1        <----------DOF2 >ANAC46<-------GAMYB  <----------DOF2    --------->DAG2           ---------->ID1           <--------   aatttggcgccgttgccgaagttctctttgattcaccattagataaggtgtagaatttagtctaaatttgtcttttcctttgttactcatggttcttttt  13937300                                                 --------->ANAC58                                                 --------->ANAC58                                               ---------->DOF2                                            --------->HSFB2a(2)                                            <---------HSFB2a(2)                                          -------->P                                          --------->MYB52(1)                                         ------->GAMYB  --------->WOX13(1)                                         --------->MYB55(1)                                        <---------MYB55(2)                                        <---------MYB111(2)                                        <---------MYB46(2)                                        <---------MYB52(2)                                   --------->ANAC58   ------------>CBF                            <--                            --------->GLK1(1)--------->LBD16                                      <--                          <------ZmHOX2a(1)<---------LBD16        <---------GLK1(1)               <--                  <---------At4g35610   <---------MYB111(1)      <---------ARR14(2)          <-------    <---------YAB1--------->At4g35610   --------->MYB46(3)       --------->ARR14(2)          <------- <---------YAB1<---------At4g35610 --------->ANAC46  --------->ANAC58                     ----------- --DOF2        <---------ZAT14     --------->ANAC58  --------->ANAC58  *TSS        <---------YAB1 <--   cttcttattcttgtgactgcagctaataggaattcgaacgcaactaccggaaagctagcaatctgtggatatgttgagactgattatcagacctgatgtt  13937400                                                                               ---------->DOF2 -------ANAC58                                 <---------At4g35610          --------->TOE2(3) -------ANAC46                                 <------NtERF2               ----------->RAV1(2) -------AtLEC2                                --------->ANAC58            -------->P ----RAV1(1)              --------->AtLEC2    --------->ANAC58         --------->At4g35610 --REM1(1)             --------->WRKY18(1)   --------->ATERF1(2)     --------->TOE1(2) >HVH21  --------->ANAC55(2)       <---------ATHB12               <---------GLK1(1)             ----- -------ANAC58        <---------------------WRI1                  --------->GLK1(1)         ---------   gcatgagtcttacgagacagagatggtcatgcatacaatgaagagggccagcaaattgatgaacagggaaacctgctacctgaaatcgccaagtctatca  13937500                                                                                       <----------DOF2                                                                                      ------>ZmHOX2a(2)                                                                                     <------ZmHOX2a(2)                                                                                     <---------RVE1(1)                                                                                    --------->ARR11(3)                                                                                    <---------ARR11(1)                                                                                    <-----------ARR10                                                       --------->At4g35610          --------->ARR14(2)                        ------>NtERF2                  <---------At4g35610          <---------ARR11(3)                    --------->ANAC58                   <-------GAMYB                <---------AGP1                    <---------ETT(2)                  <---------MYB46(3)            <---------ARR14(2)               <------NtERF2                        <------NtERF2                  <---------CCA1(2)             --------->ALFIN1            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     <---------ARR14(1)           <---------ANAC58   --------->AHL20(2)  <---------DEAR3(1)           --------->MYB52(1)           <---------ANAC46 --------->ANAC58      <---------MYB46(3)         ------->GAMYB  --------->ANAC46  --------->ANAC58     <---------At4g35610                --------->DEAR3(2) ---->WOX13(1)<-----------HVH21   --------->RVE1(1)<-----------HVH21        --------->MYB46(3) >WOX13(1) <---------ANAC58 --------->ANAC58<xxxxxxxxxxxxxxxxsmallRNA(s)  ----------->RAV1(1)       <   atcgacacaacttgggtgtcgctcgacaccaagaaaatatcagagcagatggtcgtcggatgactcttggtgactccaacagaccggatcttttctattc  13937600                           ----------->HVH21                      ------>MYB83                      <---------TOE1(2)                    <---------MYB111(2)                    --------->AtMYB61                    --------->TOE2(2)                 --------->AtMYB61                 <---------ALFIN1                                                       <---------AtLEC2             <---------ETT(1)                                                       <----------DOF2           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <----------DOF2           <---------DAG2     --------->ETT(2) <---------TOE2(2)          <-----------GT1            --------------->AtSPL8 <x     <---------ETT(2) ------>MYB46(1)      <---------HSFB2a(2)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ---------ATHB12--------->MYB46(3)         --------->HSFB2a(2)--------->ZAT14   ------->TEIL     ----   caatcggtctacaatccgaccacctacgtttgacagaagcgttttcgagataaaccctgctttctatactcttgtgagtatgcacccttttcatggtgaa  13937700                                                                                             --------                                                                                             <-------              <---------MYB46(3)                              --------->DAG2       ------>MYB83             --------->ALFIN1                                ---------->DOF2       ------>MYB46(1)            <---------MYB52(1)                         <---------TOE2(3)         --------->AtMYB61           --------->LBD16  <---------MYB46(3)        ---------->DOF2      --------->ZAT6    <-------         <---------LBD16  <---------At4g35610     --------->YAB1          <---------YAB1     -------- xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->ANAC58      <---------ANAC58       <------- ----->MYB46(3)  <------ZmHOX2a(2)              --------->ANAC58      <---------ANAC58 --------->AtLEC2   ccacaagaacacccggtggatcacattgagcggtttgaagacttggtttcaagcattaaggcaaaaagtgtttcttatgactaccttccctgcaaggtct  13937800                    --------->HSFB2a(1)   --------->ARR14(2)   <---------ARR14(2)    <----------DOF2   <---------GLK1(2)<---------HSFC1(2)                                        <---------TOE2(3) ->ARR14(3)         --------->HSFC1(2)                                      ---------->DOF2 ----ARR10          <---------HSFB2a(1)                               --------->ANAC58 --ARR11(3)        --------->ANAC58                                   --------->ANAC58 ->ARR11(3)        --------->ANAC58                 ------->TEIL      ----------->GT1 --ARR14(3)   <---------LBD16             <---------REM1(1)         ---------->DOF2  <----------DOF2   tcccatattctcttactggggaagcatctttttggcctaagtagttgaagcatggatgtttgacaacttggaaagaaataaaggtttcttttctaaacaa  13937900  Previous    Next  AGI:  At1g36790.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 6.7e-38 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana) Range:  from: 13937371    to: 13940129    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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