Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                                              <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                           --------->LBD16                        <--                                                          --------->ANAC55(1)                    <xxx                                                          --------->ANAC58                     <-----                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     <---------ARR11(3)                   --------->ANAC55(2)                 xxxxxxx                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) <---------ANAC55(2)          <---------ANAC55(2)             xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->ANAC58             ----------->GT1           <---------YAB1 <---------AHL20(2)         xxxxxxxxxxxxxxxx>smallRNA(i) --------->REM1(1) x  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  xxxxxxxxx  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)          ----------->GT1        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ---------->GT1  <---------ANAC58               <---------TOE1(3)     --------->AtLEC2 --------->ANAC55(2) -----ARR14(2)   <---------ANAC58   <---------HSFB2a(2)   --------->ANAC46--------->ANAC46 xxxxxxxxxx ->GT1  --------->ICU4<---------RVE1(1)         <---------TOE2(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   tactgaaaaaatgatttttgggtgatattttttgaataccagaaaattttagggtaaaacccgtaatcttccatgcacaaaactacaacatgtaatatta  13039500      <---------ANAC46   <---------MYB52(1) <---------ANAC58         <---------ZAT18 <---------ANAC58         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  ---------->DOF2 ------GT1   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)            <---------ARR14(2) xxxxxxxxxxxxxxxx>smallRNA(le3)                               --------->ARR14(2)                   -- xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <---------CCA1(2)          <---------At4g35610 xxxxxxxxxxxxxx>smallRNA(si3)                                --------->GLK1(1)          --------->At4g35610 xxxxxxxxxxxxx>smallRNA(le3)         <----------DOF2  <-----------GT1   --------->ARR11(3)        <--   ctttcgttctgtgcatcactcaaattagcgacctctaaactttgcctagagtttttttaccacatatccaaaaagacattgtagttttgaagctgaattt  13039600          <---------ANAC55(2)                               <-----------HVH21          ----------->GT1--------->AHL20(2)               --------->DAG2            <---------AtMYB61          --------->ANAC55(2)                           ---------->DOF2             --------->ALFIN1 ----->TEIL              <---------AHL20(2)        ----------->GT1               <---------AtMYB61 -------CCA1(2)   <-------TEIL            --------->At4g35610         <-----------GT1         <------   gaatcttccaacatgtaatatacatattaaaaaaaaaaaaaaacagcttcagccagaaaaaaggtcacattttttcatttttggaggtggtctctccttt  13039700                                                                                           --------->bZIP60(1)                                                                                           <---------ANAC58                                                                                           ----------                                                                                           <---------ANAC58                                                                                           --------->ANAC55(2)                                   --------->REM1(2)                                       <---------ANAC55(2)                                 --------->LBD16                                           <---------bZIP60(1)                         --------->ZAT14                                                   <---------ANAC46                     --------->ANAC58                        <---------ARR14(2)         ----------->HVH21                     --------->ANAC46          --------->AHL20(2)                       ----------->TGA1               <---------MYB59  <---------ANAC46             --------->ARR14(2)    --------->MYB52(1)              --------->ANAC46  <---------ANAC58       <-----------GT1           --------->MYB46(3)       ------->TEIL  --------->ANAC58        --------->YAB1 <---------CCA1(2) <----------ID1   ------ ----DOF2   <---------CCA1(2)   <---------ANAC58<---------AHL20(2)         ---------->DOF2-----------   tagcctccgaacgtatacctcactcgctacagttgcgcgtagacgaataataaatagaaaccatatccactgaaaaataaagaacaaacagtgacgtaaa  13039800                           --------->ARR14(2)                ---------->DOF2                        --------->ANAC58             ------>ZmHOX2a(2)                        --------->ANAC46            <------ZmHOX2a(2)                     --------->ZAT14               --------->AGP1                     <---------SPL7                <---------ARR11(3)                    --------->DEAR3(1)             <---------AGP1                   --------->ANAC58                --------->ARR11(3)                         *TSS  -                   --------->ANAC58               <---------CCA1(2)                     --------->GLK1(2)                   --------->ANAC46              ----------->ARR10                     <---------GLK1(2) ->GT1            ------->TEIL                 <---------MYB52(1)                    <---------ATHB12 ---->DOF2      --------->ZAT18               <-----------HVH21               --------->GLK1(1)     < >STF1------------>CBF  --------->ANAC58 --------->MYB46(3)  <<<<<<<<<<<<WRKY18   --------->TOE1(2)<-   agctagaattcaatgtaatgcaccgcacgaaacctctcacttatccaccgttagatcttagtcaaaagtcaacaaaacacaaatccaacgattctgtttt  13039900                                                                                  --------->AHL20(2)             --------->WOX13(1)                                                   <---------AHL20(1)            --------->AHL20(2)                                                    --------->AHL20(1)            <---------AHL20(2)                                                <---------AHL20(2)           --------->AHL20(2)                                                 --------->AHL20(2)      --------->REM1(2)                                                      --------->AHL20(2)    --------->LBD16                                                  <---------At4g35610   <---------ANAC58     --------->MYB52(2)                           --------->At4g35610   <---------ANAC58   <---------MYB52(1)                          <---------ZAT2  <---------AHL20(2)   <---------ANAC46   --------->At5g28300                --------->GLK1(2)   --------->AHL20(1) -------->ARR14(2)  --------->ANAC58          --------->MYB52(1)  --------->At4g35610 ---------ARR14(2)  --------->ANAC58        --------->MYB46(3)    <---------At4g35610 --------CCA1(2)    --------->ANAC46---------->DOF2   <---------KAN4(2)      <---------AHL20(2)   tgtatccgtgtaaattaatcacacggtagtttttgatgaaaagacaacaatcggagaacaatctggtctgctgctaaaatttaataaattgttttgtcta  13040000                                                                                           <------NtERF2                                            <---------ARR11(3)                           <---------ANAC46                                        ---------->DOF2                                 --------->At4g35610                                     ------>MYB46(1)                                    <------NtERF2                                     ------>MYB83                                     <---------DEAR3(1)                                   --------->DEAR3(1)                                 <---------RAP2.3(2)                                   --------->DREB2C(2)      --------->ATERF1(1)      --------->At4g35610                                   --------->MYB46(3)      <---------GLK1(1)      ---------->DOF2                                  --------->DEAR3(2)   --------->ALFIN1       --------->YAB1                --------->DAG2   <---------At5g28300 --------->LBD16         <---------ATHB12   -----               ---------->DOF2  <-----------GT1    <---------LBD16     --------->ANAC58 <---------LBD16     <---------ALFIN1   <---------ARR14(2)  --------->ARR11(3)         --------->ANAC58<---------RAP2.3(1)   attgtctccacccataaaaaagcgcgaattcaattcaccgactaaagacattctccggtggagaccccgatgcaatccactcatataagcggcggaagta  13040100                --------->ALFIN1          <---------ANAC46          --------->ALFIN1                                 <---------At4g35610        <---------MYB46(3)                                 <---------ZAT2       <---------AtMYB61                                   --------->At4g35610       --------->ALFIN1                                    --------->ZAT2       <---------DEAR3(1)                               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------MYB46(3)                                <-----------HVH21    --------->ALFIN1                                   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <---------AtMYB61                                  <---------MYB52(1)    <---------DEAR3(1)                              ------>ZmHOX2a(2)  --------->MYB55(2)                               <------ZmHOX2a(2)  <---------MYB46(3)       --------->ALFIN1       <---------ARR14(2)                     xxxxxxxxxxxx --------->ALFIN1    <------ZmHOX2a(1)            --------->ARR14(2)       <---------WOX13(1) <---------AtMYB61<------ZmHOX2a(1)           <---------LBD16    <---------ZAT2<-----------GT1 <---------DEAR3(1)  =====================================HOX2a_HOX2a<---------ANAC46  --------->HSFB2a(2) ---->MYB52(1) <------ZmHOX2a(1)           --------->ARR11(3)    <---------At4g35610   <---------HSFB2a(2)   gcggtggtggtggtggaggaggaggagaggtgagtcgaagtggattatctcggatccgttcagctccagctacttggattgaaaccctactcgaagaaga  13040200                                                    <---------ICU4               ----------->TGA1                   ------>MYB46(1)                  --------->YAB1             <---------O2                   ------>MYB83     <---------ZAT2 <---------YAB1              --------->O2                   --------->MYB52(1)         ----------->GT1                  <---------ANAC58                 --------->AtMYB61  <---------At4g35610              --------->YAB1        ----------->GT1             --------->At4g35610             <---------ZAT6       ----------->GT1--------->TOE2(3)--------->At4g35610        ----------->GT1----------->HVH21  >>>>>>>>>TBF1  <---------MYB59    --------->ZAT2 --------->ICU4<------ZmHOX2a(1) xxxxxxxxxxx>smallRNA(s2)     <-----------GT1<---------ZAT6<---------LBD16     <---------ANAC58   tgaagaagaaggtttaaaacctaacctttgtttaacagagctgcttactggtaataataactctggaggagtgataacgagtcgtgacgactcgttcgag  13040300                                                       <-----------TGA1                                                       <-----------HVH21                                                      --------->DEAR3(1)                                                    <---------At5g28300                                          <---------MYB46(3)                                      <--                                         <---------AtMYB61                                        ---                              --------->YAB1    <----------DOF2                                ------                              <---------ICU4   <---------ANAC58                          --------->ARR14(2)                             --------->ICU4 <---------RAP2.6(2)                          <---------ARR14(2)                 --------->ANAC58--------->YAB1<---------ANAC46                          <---------PCF2         <-------GAMYB----------->GT1    --------->ALFIN1               <---------At4g35610    <-----        <-----------RAV1(1)--------->YAB1<---------DEAR3(1)            --------->LBD16  <------MYB83 --------->LBD16 --------->ANAC58<---------ICU4<---------ANAC58        ------>NtERF2    <------MYB46(1) ------>ZmHOX2a(1)--------->ICU4<---------YAB1<------NtERF2          <---------LBD16   <---------MYB46(3)   ttcctgagttctgttgagcaaggattgtataatcatcatcaaggtggtggctttcaccgtcagaatagttctccggctgattttcttagtgggtctggtt  13040400  Previous    Next  AGI:  At1g35460.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G09180.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO64707.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 13039894    to: 13042080    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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