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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
HVH21
<---------
PCF2
<-----------
TGA1
------->
PIF5
--------->
bZIP60(1)
<-------
PIF5
<---------
bZIP60(1)
<-------
MYC3
--------->
bZIP60(2)
------->
MYC2
=============================================
bZIP_DOF
<---------
TGA1a
------->
MYC3
--------->
TGA1a
<-------
MYC2
--------->
ANAC55(2)
<---------
ANAC58
<---------
ANAC55(2)
--------->
TGA1a
--------->
ANAC46
<---------
ANAC46
--------->
ANAC58
<---------
ANAC58
--------->
ANAC58
--------->
ALFIN1
--------->
HSFC1(2)
<-
--------->
O2
-------------->
OsCBT
---
<---------
O2
------->
MYC2
<---------
HSFC1(2)
---
<-----------
bZIP910(1)
<-------
MYC3
<---------
HSFB2a(1)
<---
<-----------
STF1
<-------
MYC2
--------->
HSFB2a(1)
----
<-----------
HVH21
------->
MYC3
<---------
ANAC46
<------
------>
ZmHOX2a(2)
--------->
ANAC58
<------
MYB46(1)
--------
--------->
At4g35610
--------->
ANAC58
<------
ZmHOX2a(1)
---------
<---------
At4g35610
----------->
HVH21
<------
NtERF2
---------
--------->
ARR11(3)
----------->
GT1
<-----------
HVH21
<--------
<---------
ARR11(3)
<---------
HSFB2a(2)
--------->
DAG2
<---------
MYB46(3)
<---------
LBD16
--------->
ARR14(2)
--------->
HSFB2a(2)
---------->
DOF2
--------->
ALFIN1
--------->
DEAR3(1)
------>
YAB1
--------->
TGA2(2)
=======================
bZIP_DOF
<---------
ALFIN1
<---
--
ARR10
<---------
ALFIN1
<------
ZmHOX2a(1)
<---------
TGA1a
<------
MYB83
<-----------
HVH21
gcatgatctgccacgtcatcaaactcgagaagagcgtcgaaggagggaaagtgacacgcgcgtgggtcgcgaggaaggttctcacaccgtctcggaacgg
12123200
<------
NtERF2
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
MYB52(1)
<------
NtERF2
------>
NtERF2
<-----------
HVH21
--------->
ATERF1(2)
<---------
ATERF1(2)
--------->
RAP2.3(3)
--------->
DEAR3(1)
<-------
GAMYB
--------->
ATERF1(1)
--------->
At4g35610
--------->
RAP2.3(1)
<---------
ZAT2
------>
NtERF2
----------->
RAV1(2)
---------->
DOF2
--------->
LBD16
<---------
At4g35610
------>
NtERF2
-----
NtERF2
<---------
ATERF1(1)
--------->
ZAT2
--------->
REM1(1)
--->
NtERF2
--------->
ANAC46
======================
RAV
------>
RAP2.6(2)
--------->
DEAR3(1)
========================
RAV
------
ATERF1(2)
<---------
LBD16
<-----------
RAV1(2)
--------->
ANAC58
----->
ATERF1(2)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ANAC46
---
DEAR3(1)
<---------
GLK1(1)
<---------
ARR11(3)
<---------
ALFIN1
-
->
SPL7
<------
NtERF2
--------->
ARR11(3)
--------->
ARR11(3)
--------->
ANAC58
-
>
ARR14(2)
<---------
ARR11(3)
--------->
ICU4
<-----------
RAV1(1)
--
>
MYB52(1)
--------->
WRKY12
--------->
YAB1
<---------
GLK1(2)
<-
-
ARR14(2)
<---------
MYB52(1)
---------->
DOF2
---------->
DOF2
--------->
GLK1(2)
<---
------
DEAR3(1)
<-------
GAMYB
<---------
SPL7
----------->
GT1
----------->
ARR10
<------
cggcaaagtcgtcgactcgccgttgatctccgccgtcgggaaagtagagaaatcgtaaagatcagctgagattctgttgctacgcctcgctcgcttcgtc
12123300
<-------
TEIL
<---------
MYB52(1)
--------->
AtMYB61
<---------
ALFIN1
--------->
MYB46(3)
--------->
AHL20(2)
-------->
ANAC58
--------->
AHL20(2)
<-------
TEIL
-------->
ANAC58
----------->
HVH21
--------->
AHL20(2)
--------->
CCA1(2)
------->
SPL7
------>
NtERF2
<---------
ALFIN1
--------->
ARR11(1)
--------
TOE1(2)
--------->
DEAR3(1)
--------->
ANAC46
<---------
TOE2(3)
------
SPL7
--------->
DREB2C(2)
<---------
ETT(1)
--------->
YAB1
--------->
ARR11(3)
<
-----
HVH21
--------->
ANAC46
<-----------
GT1
--------->
ZAT6
---------->
DOF2
-----
gcacgaccaccgttcatcaccgccat
gactgtgtaacaagggttttttccgacacttaaattaaaactagaataagagttaaagatacagagagagagat
12123400
<---------
ARR11(3)
--------->
ARR11(3)
<---------
GLK1(2)
<---------
RVE1(1)
<------
NtERF2
<---------
ICU4
<-----------
GT1
--------->
ALFIN1
----------->
GT1
----------->
ARR10
<-----
<-------
TEIL
<---------
TOE1(3)
<---------
ANAC46
------
--------->
CCA1(2)
----------->
GT1
<------
ZmHOX2a(1)
--------->
LBD16
<-----
---------
TOE2(3)
--------->
DAG2
<---------
TOE2(3)
<---------
LBD16
---------->
DOF2
---->
CCA1(2)
<------
ZmHOX2a(1)
<----------
DOF2
--------->
ICU4
<-----------
GT1
<------
ZmHOX2a(1)
ttgagatagatacagaggaggggagagagagaaggtgaagaggtttaaggagagagtaattttggcggagagattttccctctcaaaagttttggaggat
12123500
----------->
HVH21
<---------
YAB1
-------->
ZAP1
<---------
WRKY18(1)
--------->
WRKY12
<---------
ANAC46
----------->
HVH21
<---------
LBD16
--------->
WRKY38(1)
<----------
DOF2
---
<---------
TOE1(3)
<---------
ANAC58
<---------
At4g35610
<-----------
GT1
<---------
TOE2(3)
<---------
ANAC58
<-------
TEIL
<----------
DOF2
----
ARR11(3)
>>>>>>>>>>
WRKY18
<--------
P
<-----------
GT1
----
--->
ARR14(2)
<---------
WRKY18(1)
*
TSS
<------
MYB46(1)
<-----------
GT1
<---
----
ARR14(2)
---------->
DOF2
<---------
At4g35610
<------
MYB83
<---------
AHL20(2)
<---
tttagggttttggggggtattgactaaaagcttgacttgaccgcttctgatggggg
aaggaaggaaggtagatgctttttattttccttttctctactca
12123600
<---------
TCP15(1)
<---------
PCF2
--------->
TCP20
--------->
ARR14(2)
<---------
ARR14(2)
--------->
TCP15(1)
<------
MYB46(1)
<---------
TCP15(2)
<------
MYB83
<---------
MYB46(3)
<----------
DOF2
<---------
HSFB2a(2)
<---------
ARR14(2)
<---------
DAG2
--------->
HSFB2a(2)
--------->
ARR14(2)
------>
NtERF2
<---------
LBD16
<-------
GAMYB
--------->
ANAC58
<---------
ANAC46
<---------
DEAR3(2)
--------->
ANAC58
<---------
LBD16
--------->
PCF2
<---------
MYB46(3)
--------->
ANAC46
------------>
AGL15
<---------
RAP2.6(2)
<---------
ALFIN1
-------->
CBF
--------->
ALFIN1
<---------
ARR14(2)
<---------
REM1(2)
<-----------
GT1
--------------
AGL1
----------->
RAV1(2)
<---------
DEAR3(1)
<-----------
GT1
<---------
AHL20(2)
--------------
AG
<---------
PCF5
--------->
ARR14(2)
<----------
DOF2
<------------------------
ANAC81
ccaatttcgggagagagtgggtccccctgattccaaattcgaggcggtttcgatttctttttctccacgcctttttttgtttttatttgtttccctattt
12123700
<----------
DOF2
<---------
At4g35610
--------->
AHL20(2)
--
--------->
At4g35610
------>
ZmHOX2a(1)
<---------
ARR14(2)
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
AtMYB61
--------->
ARR14(2)
<----------
DOF2
--------->
MYB59
---------->
ID1
---------->
DOF2
------>
ZmHOX2a(1)
<-------
tgttcgatttcttttatttcaataagttagctaattaagtccttttttgtcctcaataaaaccaaagctaattaagtcctatccattatccagttccgat
12123800
--------->
YAB1
<------
ZmHOX2a(2)
--------->
GLK1(1)
--------->
ANAC46
<--------
ATHB1
--------->
ATHB12
-------->
P
<---------
GLK1(1)
--------->
ATHB12
<-----------
ARR10
--------->
ICU4
--------->
ANAC46
-----
--------->
HSFB2a(2)
<---------
AGP1
<---------
ATHB12
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ANAC46
--------->
ARR11(3)
<---------
AHL20(2)
<--------
ATHB1
<---------
ALFIN1
--------->
GLK1(2)
------>
ZmHOX2a(2)
<---------
YAB1
<---------
ATHB12
--------->
HVH21
<---------
HSFB2a(2)
<---------
ARR11(3)
<---------
YAB1
<---------
TOE2(3)
<---------
AHL20(2)
--
YAB1
<---------
MYB52(1)
--------->
YAB1
<-------
TEIL
--------->
AHL20(2)
--------->
ICU4
tgtgacaccttctgttttgtagaaattctaccccaataagatctctcagattcaatgatttttgttttaattaagttataggccaatgatttattagcaa
12123900
<----
-----
<----
<---------
AHL20(1)
--------->
AHL20(2)
--------->
AHL20(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(2)
----------->
HVH21
<----------
DOF2
<---------
AHL20(1)
--------->
WRKY12
--------->
GLK1(1)
--------->
AHL20(2)
--------->
ANAC58
--------->
ARR11(3)
--------->
TOE2(3)
--------->
ANAC58
<---------
ARR11(3)
<-----------
GT1
<---------
AHL20(2)
--------->
ANAC46
--------->
AHL20(2)
--------->
AHL20(2)
----------->
RAV1(1)
<-
----->
DOF2
--------->
AHL20(2)
----------->
GT1
<---------
GLK1(1)
<---------
TOE2(3)
--------->
AHL20(2)
aagtccaaaacaaataaaaacacaccactgacccagttaaaatataagatttctttctatttttttagttaagaaaattacaacataaattattttattt
12124000
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(2)
--------->
At4g35610
<---------
AHL20(2)
<---------
ARR11(3)
<---------
AHL20(1)
<---------
TOE2(3)
<---------
AHL20(1)
--------->
AHL20(2)
<---------
YAB1
--------->
AHL20(1)
-----
AHL20(2)
<---------
AHL20(2)
--------->
YAB1
--------->
ARR11(3)
--------->
YAB1
---->
AHL20(2)
--------->
AHL20(2)
<--------
HAHB4
<---------
AHL20(2)
<---------
ZAT2
-----
AHL20(1)
--------->
TOE2(3)
--------->
YAB1
--------->
AHL20(2)
<---------
At4g35610
--------
YAB1
----------->
RAV1(1)
<---------
YAB1
<---------
TOE2(3)
--------->
ZAT2
--------
tatttttgtcagaaacaacataaattatttattatctattattaataagattaatgtgaataaaatattcgattagttcagcttggattaagcatactca
12124100
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AGI:
At1g33415.1
Description:
other RNA
Range:
from: 12118972
to: 12126573
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At1g33420.1
Description:
PHD finger family protein. Identical to PHD finger protein At1g33420 [Arabidopsis Thaliana] (GB:Q9C810); similar to MMD1 (MALE MEIOCYTE DEATH 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G66170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67097.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011)
Range:
from: 12120866
to: 12123556
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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