Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100             <-----------HVH21                                  <---------PCF2           <-----------TGA1                               ------->PIF5          --------->bZIP60(1)                             <-------PIF5          <---------bZIP60(1)                             <-------MYC3          --------->bZIP60(2)                             ------->MYC2          =============================================bZIP_DOF          <---------TGA1a                                 ------->MYC3          --------->TGA1a                                 <-------MYC2          --------->ANAC55(2)                            <---------ANAC58          <---------ANAC55(2)                            --------->TGA1a          --------->ANAC46                               <---------ANAC46          --------->ANAC58                               <---------ANAC58          --------->ANAC58                               --------->ALFIN1--------->HSFC1(2)        <-          --------->O2                                   -------------->OsCBT                     ---          <---------O2                                ------->MYC2       <---------HSFC1(2)       ---         <-----------bZIP910(1)                       <-------MYC3       <---------HSFB2a(1)     <---         <-----------STF1                             <-------MYC2       --------->HSFB2a(1)     ----      <-----------HVH21                               ------->MYC3<---------ANAC46            <------    ------>ZmHOX2a(2)                                --------->ANAC58    <------MYB46(1)     --------   --------->At4g35610                               --------->ANAC58 <------ZmHOX2a(1)     ---------   <---------At4g35610                          ----------->HVH21<------NtERF2              ---------  --------->ARR11(3)                          ----------->GT1 <-----------HVH21             <--------  <---------ARR11(3)   <---------HSFB2a(2)   --------->DAG2 <---------MYB46(3)          <---------LBD16  --------->ARR14(2)   --------->HSFB2a(2)  ---------->DOF2--------->ALFIN1         --------->DEAR3(1) ------>YAB1--------->TGA2(2)               =======================bZIP_DOF      <---------ALFIN1<--- --ARR10<---------ALFIN1               <------ZmHOX2a(1) <---------TGA1a <------MYB83<-----------HVH21   gcatgatctgccacgtcatcaaactcgagaagagcgtcgaaggagggaaagtgacacgcgcgtgggtcgcgaggaaggttctcacaccgtctcggaacgg  12123200                                   <------NtERF2                                  --------->HSFB2a(2)                                  <---------HSFB2a(2)                                <---------MYB52(1)                                <------NtERF2                               ------>NtERF2                               <-----------HVH21                              --------->ATERF1(2)                              <---------ATERF1(2)                              --------->RAP2.3(3)                              --------->DEAR3(1)                        <-------GAMYB                             --------->ATERF1(1)             --------->At4g35610                             --------->RAP2.3(1)             <---------ZAT2                            ------>NtERF2                    ----------->RAV1(2) ---------->DOF2            --------->LBD16                  <---------At4g35610------>NtERF2 -----NtERF2                <---------ATERF1(1)              --------->ZAT2    --------->REM1(1) --->NtERF2                --------->ANAC46                  ======================RAV ------>RAP2.6(2)          --------->DEAR3(1)              ========================RAV ------ATERF1(2)          <---------LBD16                  <-----------RAV1(2) --------->ANAC58 ----->ATERF1(2)        ------>ZmHOX2a(2)                 <------ZmHOX2a(2)    --------->ANAC46 ---DEAR3(1)           <---------GLK1(1)                 <---------ARR11(3)    <---------ALFIN1     - ->SPL7 <------NtERF2 --------->ARR11(3)                 --------->ARR11(3)    --------->ANAC58     - >ARR14(2)            <---------ARR11(3)               --------->ICU4  <-----------RAV1(1)         -- >MYB52(1)          --------->WRKY12              --------->YAB1   <---------GLK1(2)               <- -ARR14(2)         <---------MYB52(1)---------->DOF2 ---------->DOF2--------->GLK1(2)            <--- ------DEAR3(1)   <-------GAMYB<---------SPL7     ----------->GT1----------->ARR10            <------   cggcaaagtcgtcgactcgccgttgatctccgccgtcgggaaagtagagaaatcgtaaagatcagctgagattctgttgctacgcctcgctcgcttcgtc  12123300          <-------TEIL         <---------MYB52(1)    --------->AtMYB61    <---------ALFIN1   --------->MYB46(3)                                     --------->AHL20(2) -------->ANAC58                                      --------->AHL20(2)           <-------TEIL -------->ANAC58      ----------->HVH21              --------->AHL20(2)           --------->CCA1(2) ------->SPL7     ------>NtERF2                  <---------ALFIN1                --------->ARR11(1) --------TOE1(2) --------->DEAR3(1)           --------->ANAC46                <---------TOE2(3) ------SPL7      --------->DREB2C(2)          <---------ETT(1)     --------->YAB1--------->ARR11(3) < -----HVH21      --------->ANAC46           <-----------GT1  --------->ZAT6  ---------->DOF2    -----   gcacgaccaccgttcatcaccgccatgactgtgtaacaagggttttttccgacacttaaattaaaactagaataagagttaaagatacagagagagagat  12123400                                                                     <---------ARR11(3)                                                                     --------->ARR11(3)                                                                     <---------GLK1(2)                                                                    <---------RVE1(1)                                                                <------NtERF2                                                         <---------ICU4  <-----------GT1               --------->ALFIN1                    ----------->GT1 ----------->ARR10           <-----        <-------TEIL                        <---------TOE1(3) <---------ANAC46                 ------       --------->CCA1(2)      ----------->GT1 <------ZmHOX2a(1)--------->LBD16                 <----- ---------TOE2(3)            --------->DAG2 <---------TOE2(3)<---------LBD16      ---------->DOF2 ---->CCA1(2) <------ZmHOX2a(1)         <----------DOF2 --------->ICU4  <-----------GT1       <------ZmHOX2a(1)   ttgagatagatacagaggaggggagagagagaaggtgaagaggtttaaggagagagtaattttggcggagagattttccctctcaaaagttttggaggat  12123500                                            ----------->HVH21                                            <---------YAB1                                     -------->ZAP1                                   <---------WRKY18(1)                                  --------->WRKY12          <---------ANAC46        ----------->HVH21        <---------LBD16           --------->WRKY38(1)                   <----------DOF2           --- <---------TOE1(3)              <---------ANAC58                   <---------At4g35610  <-----------GT1 <---------TOE2(3)              <---------ANAC58                  <-------TEIL      <----------DOF2 ----ARR11(3)                   >>>>>>>>>>WRKY18                 <--------P      <-----------GT1 ---- --->ARR14(2)                 <---------WRKY18(1)       *TSS   <------MYB46(1)  <-----------GT1  <--- ----ARR14(2)          ---------->DOF2    <---------At4g35610  <------MYB83 <---------AHL20(2)   <---   tttagggttttggggggtattgactaaaagcttgacttgaccgcttctgatgggggaaggaaggaaggtagatgctttttattttccttttctctactca  12123600                  <---------TCP15(1)                 <---------PCF2                 --------->TCP20                 --------->ARR14(2)                 <---------ARR14(2)                 --------->TCP15(1)                <------MYB46(1)                <---------TCP15(2)                <------MYB83               <---------MYB46(3)                                   <----------DOF2     <---------HSFB2a(2)                    <---------ARR14(2)     <---------DAG2     --------->HSFB2a(2)                    --------->ARR14(2)   ------>NtERF2    <---------LBD16                        <-------GAMYB        --------->ANAC58    <---------ANAC46                      <---------DEAR3(2)    --------->ANAC58   <---------LBD16--------->PCF2          <---------MYB46(3)    --------->ANAC46 ------------>AGL15                      <---------RAP2.6(2)  <---------ALFIN1 -------->CBF --------->ALFIN1   <---------ARR14(2)          <---------REM1(2)         <-----------GT1 --------------AGL1   ----------->RAV1(2)<---------DEAR3(1)<-----------GT1      <---------AHL20(2) --------------AG<---------PCF5  --------->ARR14(2)   <----------DOF2      <------------------------ANAC81   ccaatttcgggagagagtgggtccccctgattccaaattcgaggcggtttcgatttctttttctccacgcctttttttgtttttatttgtttccctattt  12123700                                       <----------DOF2                          <---------At4g35610         --------->AHL20(2)                           --                          --------->At4g35610    ------>ZmHOX2a(1)                        <---------ARR14(2)          <---------AHL20(2)           ------>ZmHOX2a(1)   --------->AtMYB61              --------->ARR14(2)        <----------DOF2  --------->MYB59      ---------->ID1---------->DOF2 ------>ZmHOX2a(1)<-------   tgttcgatttcttttatttcaataagttagctaattaagtccttttttgtcctcaataaaaccaaagctaattaagtcctatccattatccagttccgat  12123800                                                     --------->YAB1                                      <------ZmHOX2a(2)                                      --------->GLK1(1)                           --------->ANAC46          <--------ATHB1                     --------->ATHB12                          -------->P  <---------GLK1(1)                             --------->ATHB12                      <-----------ARR10             --------->ICU4           --------->ANAC46   -----                --------->HSFB2a(2)  <---------AGP1 <---------ATHB12<---------AHL20(2) --------->AHL20(2)              <---------ANAC46       --------->ARR11(3)         <---------AHL20(2)  <--------ATHB1  <---------ALFIN1    --------->GLK1(2)------>ZmHOX2a(2)        <---------YAB1     <---------ATHB12 --------->HVH21<---------HSFB2a(2)  <---------ARR11(3)<---------YAB1 <---------TOE2(3)<---------AHL20(2) --YAB1    <---------MYB52(1)     --------->YAB1<-------TEIL    --------->AHL20(2) --------->ICU4   tgtgacaccttctgttttgtagaaattctaccccaataagatctctcagattcaatgatttttgttttaattaagttataggccaatgatttattagcaa  12123900                                                                                                <----                                                                                                -----                                                                                                <----                                                                                           <---------AHL20(1)                                                                                           --------->AHL20(2)                                                                                        --------->AHL20(1)                                                                                       --------->AHL20(2)                                                                                       <---------AHL20(2)                                                          <---------AHL20(2)          <---------AHL20(2)                         ----------->HVH21        <----------DOF2                     <---------AHL20(1)                         --------->WRKY12     --------->GLK1(1)                    --------->AHL20(2)                   --------->ANAC58          --------->ARR11(3)                  --------->TOE2(3)                   --------->ANAC58          <---------ARR11(3)            <-----------GT1 <---------AHL20(2)                   --------->ANAC46--------->AHL20(2)     --------->AHL20(2)  ----------->RAV1(1)  <- ----->DOF2--------->AHL20(2)  ----------->GT1<---------GLK1(1)     <---------TOE2(3) --------->AHL20(2)   aagtccaaaacaaataaaaacacaccactgacccagttaaaatataagatttctttctatttttttagttaagaaaattacaacataaattattttattt  12124000                                      <---------YAB1                          <---------AHL20(2)                         <---------AHL20(2)                         --------->AHL20(2)                      --------->AHL20(2)                                     --------->At4g35610                      <---------AHL20(2)                     <---------ARR11(3)                     <---------AHL20(1)     <---------TOE2(3)<---------AHL20(1)                     --------->AHL20(2)     <---------YAB1   --------->AHL20(1) -----AHL20(2)       <---------AHL20(2) --------->YAB1       --------->ARR11(3)          --------->YAB1 ---->AHL20(2)    --------->AHL20(2)<--------HAHB4        <---------AHL20(2) <---------ZAT2 -----AHL20(1)  --------->TOE2(3)   --------->YAB1        --------->AHL20(2) <---------At4g35610 --------YAB1----------->RAV1(1)   <---------YAB1 <---------TOE2(3)          --------->ZAT2  --------   tatttttgtcagaaacaacataaattatttattatctattattaataagattaatgtgaataaaatattcgattagttcagcttggattaagcatactca  12124100  Previous    Next  AGI:  At1g33415.1    Description:  other RNA Range:  from: 12118972    to: 12126573    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g33420.1    Description:  PHD finger family protein. Identical to PHD finger protein At1g33420 [Arabidopsis Thaliana] (GB:Q9C810); similar to MMD1 (MALE MEIOCYTE DEATH 1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G66170.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO67097.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) Range:  from: 12120866    to: 12123556    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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