Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------LBD16                            --------->At4g35610                            <---------At4g35610                            --------->ATERF1(1)                            <---------ABI4(1)                           <---------RRTF1(1)                           <---------ORA47(2)                           <---------RAP2.6(1)                           <---------RAP2.3(1)                           <---------ATERF1(1)                           ------>NtERF2                           <---------ERF1                           <---------DEAR4(2)                          <---------RAP2.3(3)                          <---------ANAC46                          <---------RAP2.6(2)                          --------->ATERF1(2)                          <---------ATERF1(2)                          <---------DEAR3(1)                          --------->DEAR3(1)                          <---------RAP2.3(2)                          <---------RRTF1(2)                         --------->DREB2C(1)                         --------->ATERF1(1)                         <------NtERF2                         --------->At4g35610                         --------->DEAR4(2)                         <---------ABI4(1)                         <---------At4g35610                         --------->RAP2.3(1)                        <---------ATERF1(1)                        ------>NtERF2                        <---------RAP2.3(1)                        <---------ORA47(2)                        <---------ERF1                        <---------DEAR4(2)                        <---------RAP2.6(1)                        <---------RRTF1(1)                       <---------RAP2.3(2)                       <---------RAP2.6(2)                       <---------ATERF1(2)                       --------->DEAR3(1)                       <---------DEAR3(1)                       <---------RAP2.3(3)                       <---------DREB2C(2)                       <---------RRTF1(3)                       <---------RRTF1(2)                      <------NtERF2                      --------->ATERF1(1)                      <---------ABI4(1)                     <---------RAP2.3(1)                     <---------RRTF1(1)                     ------>NtERF2                     <---------ATERF1(1)                     <---------ERF1                     <---------DEAR4(2)                    --------->O2                    <---------RAP2.3(2)                    <---------DEAR3(1)                    <---------O2                   <------NtERF2                  ------>NtERF2                  <---------ATERF1(1)                 <---------DEAR3(1)                 --------->DEAR3(1)                <------NtERF2--------->ALFIN1                --------->ATERF1(1)                --------->RAP2.3(1)               <---------RRTF1(1)               <---------RAP2.6(1)               <---------DEAR4(2)               <---------ERF1<---------DEAR3(1)               ------>NtERF2<------NtERF2               <---------ORA47(2)               <---------RAP2.3(1)               <---------ATERF1(1)              <---------RRTF1(3)              <---------ANAC46              <---------DEAR3(1)              --------->DEAR3(1)              <---------RAP2.3(3)             --------->ATERF1(1)             <------NtERF2--------->ALFIN1             <---------ABI4(1)            <---------DEAR4(2)            <---------RAP2.3(1)                                            --------->ICU4            <---------ORA47(2)             <---------YAB1                  <---------YAB1            <---------ATERF1(1) --------->ALFIN1                     <---------HSFB2a(2)           <---------DEAR3(1)<---------ANAC46                        --------->HSFB2a(2)           <---------RAP2.3(2) --------->ATERF1(1)              <---------MYB46(3)           <---------RAP2.3(3) <------NtERF2                    --------->MYB52(2) -------->At4g35610--------->ATERF1(1)----------->GT1         <---------MYB52(1) -------->ZAT2<---------RAP2.3(2)    <------ZmHOX2a(1)  <---------SPL7--------->LBD16     <---------ATHB12 ------->ARR11(3)----------->HVH21<------ZmHOX2a(1)   <---------------AtSPL3  <---------WOX13(1)    - >GAMYB  --------->CCA1(2)<---------RRTF1(3)          <---------------AtSPL8--------->ATHB12<--------   agagctggaagagacggcggcgacggcggcggcggaggaggagttacaattggatgatggtaccgtttgttccagagatgattgtcttcccaatctttaa  12059100                       <------MYB46(1)                       <---------MYB46(3)                       <------MYB83                      --------->MYB46(2)                      --------->MYB111(2)                      <---------DEAR3(1)                      <---------AtMYB61            --------->ANAC58                      --------->MYB55(2)           --------->ANAC58                      <---------MYB46(3)          <-----------------------TaNAC69(2)                      --------->MYB111(1)         <---------LBD16                     <---------MYB55(1)          --------->MYB52(1)                     <--------P               --------->ANAC58                   <---------MYB46(3)         --------->ANAC46                  --------->ALFIN1            --------->ANAC58                              <------NtERF2            ------->GAMYB                --------->ANAC58                                  ------>NtERF2         --------->MYB52(1)              --------->ANAC58                                 <---------DEAR3(1)    ----------------->AGL1  <---------At4g35610 ----------->HVH21       <---------AtMYB61 --------->ALFIN1 -------->At4g35610--------->MYB55(2)  ---------->DOF2              --------->At4g35610  --------->ATERF1(1) --DOF2 --------->MYB46(3)  --------->At4g35610--------->DEAR3(2)---------->DOF2       <---------DEAR3(1)   gaagatgccaacaacgggaagtggttggtgagaagacgagagaaagccaagcgacggaagcgagaagaagagcggaggtagcgactaatgcggtggcgaa  12059200                           --------->ALFIN1                   <---------ARR14(2)                   --------->ARR14(2)                   <---------GLK1(2)                             <------ZmHOX2a(1)              <------ZmHOX2a(1)                              --------->ALFIN1            --------->ANAC58    <------ZmHOX2a(1)        <---------ORA47(1)           <------ZmHOX2a(1)            --------->ANAC58 <------ZmHOX2a(1)          <------ZmHOX2a(1)           --------->ANAC58       <----------ID1     <------ZmHOX2a(1)           --------->ANAC58              --------->ANAC58       --------->ANAC58<---------HSFB2a(2)            --------->ANAC58         <---------TOE2(3)    <       --------->ANAC58--------->HSFB2a(2) <---------LBD16<---------DEAR3(1) ---------->DOF2        -   acgactgagacgacaaggacggattcgaggaggaggacgagagattggggaagagcaaggacggtgaggagaagatgaataaaggtaaggaatgaatgag  12059300                                                      --------->ATERF1(1)                                                      <------NtERF2                                                     <---------ATERF1(1)                                                     ------>NtERF2                                                    <---------DEAR3(1)                                                    <---------ETT(2)                                                    ----------->HVH21                                                   --------->SPL7                                                  <---------ATERF1(1)                                                 --------->LBD16                                               <---------LBD16                                               <------NtERF2                                               --------->ATERF1(1)                                              --------->ABI4(1)                                              ------>NtERF2                                              <---------ATERF1(1)                                             --------->RRTF1(2)                                             --------->RRTF1(3)                                             --------->RAP2.3(3)                                             --------->DEAR3(1)                                             --------->RAP2.3(2)                                             <---------DEAR3(1)                                             <---------ATERF1(2)                                             --------->ATERF1(2)    --------->DEAR3(1)                                            --------->RAP2.6(1)    <------NtERF2                                            --------->ATERF1(1)    --------->ATERF1(1)                                            --------->RRTF1(1)     --------->RAP2.3(1)                                            --------->ERF1        <---------ATERF1(1)                                            --------->ORA47(2)    <---------ERF1                                            --------->RAP2.3(1)   <---------RAP2.3(1)                                           --------->At4g35610    <---------ORA47(2)                                           --------->LBD16        <---------DEAR4(2)                                           <---------At4g35610   <---------DEAR3(1)                                           <---------RAP2.3(1)   --------->DEAR3(1)                                           ------>NtERF2         <---------RAP2.3(2)                                           <---------ATERF1(1)   <---------RAP2.3(3)                  --------->ANAC46        --------->ANAC46       <---------RRTF1(3)      --------->At5g28300              <---------ARR14(2)        <---------ANAC46    <---------DEAR3(1)      <---------ALFIN1--------->DEAR4(2)  <---------ABI4(1)    <---------ANAC46   --------->DEAR3(1)<---------LBD16     --------->SPL7  --------->MYB52(1) ------->TEIL      --------->ARR14(2)   --------->ARR14(2) ----------->HVH21--------->ANAC58    --------->GLK1(1)     --------->MYB52(1)                <------ ----------->TGA1 --------->ANAC58    <---------GLK1(1)     <---------ARR14(2)<-----------GT1 ------- -------MYC3  <---------AHL20(2) --------->ZAT18 ------>NtERF2<---------DEAR3(1)     --------->AHL20(2) ------>MYC3  --------->AHL20(2) <---------ZAT18--------->DEAR3(1)------>NtERF2  <---------ANAC46   cacatgacggtgagaattaaacgcatcgccccaagcgcacatttccgccgccgggcgacgcagaacggcggcgaaccaagtttccgtttaaattagggca  12059400                <-----------HVH21               --------->DEAR3(1)                                *TSS    <-----------RAV1(2)              <------NtERF2                                    <----------DOF2              --------->DEAR3(2)                           <------NtERF2 <---------LBD16              --------->MYB46(3)                           <---------MYB52(1)             ------>NtERF2                                <---------ATERF1(1)            <---------ALFIN1                              ------>NtERF2<-----------HVH21            --------->DEAR3(1)                           <---------DEAR3(1)         --------->ANAC58                                --------->DEAR3(1) ---ZAT18------>ZmHOX2a(2)      <-----------GT1    <----------DOF2   <----------DOF2   <---------YAB1 -->ZAT18--------->ANAC58     <-----------GT1<<<<<<<<<TBF1<-----------HVH21--------->LBD16   cagggtttcgatcgccaccgtcgtctcgtttttttctctctctcttcttcttcctttcgccgtcgctttgacttttcaggggtttgattttgatttttca  12059500                                                                <---------ANAC46                                                                <---------ANAC58                  ---                    --------->ANAC58                            <---------ANAC58          <----------                    --------->ANAC58                 <------ZmHOX2a(2)                   --------->PCF2               --------->MYB59                      --------->AGP1                       --------->TCP20           <---------GLK1(2)                        <---------AGP1                       <---------PCF2           --------->ARR14(2)                       --------->ARR11(3)          <---------MYB59  <---           <---------ARR14(2)                       <---------ARR11(3)         <-----------------AGL3          <------NtERF2---------->DOF2             <---------CCA1(2)           <-----------------AGL1        <---------ANAC46              --------->At5g28300    <---------TOE2(3) ----------------->AGL3  <XXXXXXXXXXXXXXXXXXXMIR866-3P     <---------DEAR3(1)------>ZmHOX2a(2)        ----------------->AGL1   aaatttaggggcggattttggtaagaaaagtttttgcctcggtgaatgggcttagatctaatttaggcttgtagtaatcgggcctaatatgggcccagta  12059600                                                                                                   <-                                                                                                   <-                                                                                                  ---                                                             ===================================bZIP_DOF                                                             ===================MYC_MYB           ---                                                             ========================================                                                             ========================================                                                             ========================================                                                             <---------ZAT2                      <---                                                             --------->ZAT2                      ====                                                             --------->O2                        ----                              ----------->HVH21              <---------TGA1a                   ------                              --------->WRKY12              <---------TOE1(2)                  ======                              --------->WRKY38(1)     --------->At4g35610                     <------         --------->GLK1(2)   <---------MYB52(1)       <---------At4g35610                     <------        --------->ARR14(2)   <-----------HVH21<---------ZAT18<---------O2                     <------        <---------ARR11(3)  <---------At4g35610    <---------ZAT14      <-------GAMYB         -------        <---------ARR14(2)  --------->At4g35610  --------->ANAC46       =============================        --------->ARR11(3)  --------->LBD16   --------->ZAT18--------->TGA1a          --------->GLK1(1)        <---------GLK1(2) --------->ZAT14 <---------------AtSPL8       <------MYB83  ---------->DOF2 -------->GT1    <---------ICU4         <---------AHL20(2) <-----------RAV1(2)       ================ -------AGL1     --------->YAB1<---------ATERF1(1) --------->ZAT14     <------MYB46(1)<---------GLK1(1) ------------AtSPL8       <---------ZAT14 --------------->AtSPL8 <------NtERF2  --------->MYB52(1)===   tggtacaaaagattctcaaacatcacagtccggtgaccccaatttatgtacacttcagttcccaggtggcatttggttgtactatcggaaagcccaacaa  12059700         <---------bZIP60(1)         --------->bZIP60(1)         =======================================bZIP_DOF     <-----------HVH21 ----------HVH21 ----------TGA1 ---->GAMYB ------>ANAC46 =========MYC_MYB =====MYC_MYB ==MYC_MYB ---------AtMYB77 ==================MYC_MYB ----->MYB46(3)       <---------ARR14(2) ->GAMYB --------->TGA1a<-------TEIL ==================MYC_MYB                     ------>ZmHOX2a(1) ---MYB52(2)          --------->ARR14(2)       <---------DAG2 ---MYB111(2)         <---------GLK1(2)     <---------YAB1 ---MYB55(2)    <---------GLK1(1)          <-----------GT1 -->MYB46(3)    --------->GLK1(1)        <---------YAB1          <----------DOF2             <------- ==================MYC_MYB            <---------YAB1         <---------AHL20(2)              -------- ==================bZIP_DOF          <----------DOF2     <---------AHL20(2)      <----------DOF2 ==================MYC_MYB <---------MYB52(1)  <----------DOF2<-----------GT1    <---------DAG2    <-   ccgtcactgtcatgtcagaattcagattcgttatcccatctttattatcctttttgtttttatttaactttgaaagatgactactttttttcgaagaaac  12059800                                  <---------MYB46(3)                           --------->ATHB51            <---------TOE2(3)                           <---------ICU4         <---------ICU4                           --------->ATHB12       --------->AHL20(2)                          --------->ICU4          --------->YAB1                          <---------YAB1          -------->ATHB1                <---------ANAC58                        --------->YAB1            <--------HAHB4                <---------ANAC46                        <--------HAHB4            --------->ATHB51              <---------ANAC58 --ARR14(2)            <---------YAB1            <---------YAB1            --------->YAB1    -------- ->ARR14(2)       --------->HSFB2a(2)            <---------ATHB51         <---------YAB1 --------->MYB52(1) ---------DOF2    <---------HSFB2a(2)            --------->ICU4       <---------ANAC46 <---------MYB52(2)   gcttttatttctaaattcttctagtatcattattgatggtttcttaaaacaattattaagttaagagacatgtcttataatagcttataactaacaaaag  12059900                                                                               <---------TOE2(3)                                                                               <---------TOE1(3)                                                                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                        xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                       --------->ARR14(2)         xxx                                                                      --------->YAB1            xxxxx                                                                      <------ZmHOX2a(1)        xxxxxx                                                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                    <---------TOE2(3)         xxxxxxx                              <---------ARR11(3)                   --------->YAB1--------->TOE2(3)xxx                              --------->ARR11(3)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   xxxxxxxx                             <---------CCA1(2)   <---------YAB1   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                           --------->CCA1(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->YAB1                          <---------ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)      <---------YAB1                    --------->CCA1(2)          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    --------->YAB1 -->DOF2  <----------DOF2 --------->ARR11(3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <---------YAB1   tctcttaaaacacttttgttagatataagatatatctcttaactaagagttatgttaagagaccatcaataaggatagtctaacgtttattatgaaaaca  12060000  Previous    Next  AGI:  At1g33250.1    Description:  fringe-related protein. similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62850.1); contains InterPro domain Fringe-like; (InterPro:IPR003378); contains InterPro domain Protein of unknown function DUF604 (InterPro:IPR006740) Range:  from: 12057230    to: 12059465    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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