Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                          --------->ARR14(2)                                                                                          <---------ARR14(2)                                                                                         ============                                                                                         ============                                                                                   <----------DOF2                                                                                ================HOX2a_HOX2a                                                                                ------>ZmHOX2a(2)                                                                               <---------GLK1(1)                                                                               --------->GLK1(1)                                                                               <------ZmHOX2a(2)                                                           --------->At4g35610 =================HOX2a_HOX2a                                                           --------->ZAT2     <---------ARR11(3)                   --------->YAB1                         --------->ANAC46    <---------AGP1   <-----           <---------ZAT2                              -------->P             --------->ARR14(2)           <---------At4g35610                     <<<<<<<<<ARR1              <---------ARR14(3)     ------>MYB83  --------->AHL20(2)              <<<<<<<<<ARR2              --------->ARR14(3)     ------>MYB46(1)  <---------ICU4          --------->ANAC58                --------->ARR11(3)   <---------MYB59<---------ATHB12            --------->ANAC46        --------->TOE2(3)  <------ZmHOX2a(1) ->ANAC46  --------->At4g35610                --------->ANAC58 <---------ZAT6 <---------ARR14(2) --GT1     --------->ZAT2            <----------DOF2--------->YAB1    <----------DOF2  <---------TOE2(3)   atggaccaacttcagctccaataaaaatcacagacattcctttctcacacacaatcttaccagcagtcttaactttagaagatctctttgaggatttagc  11923300                         ----------->HVH21                       ------>ZmHOX2a(1)                       --------->At4g35610                   ------>ZmHOX2a(2)                                                  <---------TOE1(3)                  --------->GLK1(1)                                                   <---------TOE2(3)                  <---------GLK1(1)                                              <----------DOF2                  <------ZmHOX2a(2)                                             --------------->AGL15                 <---------ARR11(3)                                             <---------------AGL15                 <---------ARR14(2)                                            ----------------->AGL1                 --------->ARR11(3)                                            <-----------------AG                 <---------ARR14(3)                                            <-----------------AGL1           <---------ANAC58                                               <---------ARR14(2)           <---------ANAC58 <---------TOE1(3)              --------->ANAC46    ----------------->AGL2 --->At4g35610   --------->ARR14(2)                 --------->TOE1(3)     --------->ARR14(2)       -- =========================HOX2a_HOX2a          <---------WOX13(1)   --------->WRKY18(1)     --------- ========================HOX2a_HOX2a--------->ANAC46--------->TOE2(3)    --------->ATHB12   <-------- ----At4g35610   --------->ARR14(3)--------->MYB46(3)     ------->GAMYB<---------TOE2(3)   --------->GLK1(2)   agaaacaggtttagcttgagatctcctctgaaggttatccaccatgttgaatgaccttaacccacaatgagtcaaggattggccttttaaggtaatctga  11923400                                   --------->DAG2  <-----------HVH21               ---------->DOF2 <---------bZIP60(1)        <---------MYB46(3)                                     <---------ICU4   = --------->bZIP60(1)       <---------YAB1                                         --------->ICU4    - --------->REM1(1)         <---------WOX13(1)                              --------->At4g35610   ---- --------->bZIP60(2)     <---------ICU4                                    <---------At4g35610  <---- --------->RAV1(1)       --------->ATHB12            ---------->DOF2   ------------>AtMYB77--------->MYB52(1) >At4g35610             <---------YAB1     --------->ARR11(3)         ----------->HVH21    -------->P -At4g35610             --------->ICU4     <---------ARR11(3)        <-----------HVH21   --------->MYB46(3)   gcgacatcagagcatgaagaagcaccatgattgttgaaaagtgaagttcttgacacaaagttagaagaagcagtcacagttgccattatgaactacccgt  11923500                                   --------->TOE2(3)                                   <----------DOF2<-------TEIL                                  <----                       --------->YAB1--------->AHL20(2)                                         -----           --------->MYB46(3)      <---------------AGL15                                        <----         ----------->RAV1(1)      <-----------------AGL3                                        ----- <---------LBD16      <---------ATHB12           --------->CCA1(2)                        --------->ZAT18 ====================RAV          ----------------->AGL2                              --------->DAG2 ---------->RAV1(2)   <<<<<<<<<ARR2--------------->AGL15                 --------->AHL20(2)     <---- ----->WRKY12--------->At4g35610  ----------------->AGL3               --------->TOE2(3)--------->At4g35610 -----MYB52(1)      --------->WOX13(1)      ---------->DOF2         <-----------GT1  ---------->DOF2   ttacctggattcaacagatgaacaatcaaaatcgatactttaaatagaaagatacaatctttgacaaattttacattaaacagaagaaaaagctcacaga  11923600            <---------TOE2(3)        <---------ZAT2        --------->At4g35610        <---------At4g35610     --------->At5g28300   --------->ANAC58   --------->ANAC58   --------->ANAC46  <---------At5g28300  <---------LBD16                                                            <---------ANAC46 <-----------GT1                          --------->DAG2                    <-----------------------TaNAC69(2) -----ARR11(3)                           ---------->DOF2                  <---------MYB52(1) ---->ARR11(3)                     --------->At4g35610     <------ZmHOX2a(1)--------->MYB59 -----GLK1(2)               <---------ATHB12         <---------ZAT14 <-----------HVH21         ------ ---->ARR14(2)            --------->MYB52(1)         <---------At4g35610 <-------GAMYB >>>>>>>>>TBF1 -----ARR14(2)<------ZmHOX2a(1)  <------ZmHOX2a(1)   --------->At4g35610 ============================   ttttcacggcaactgaggaaataagagccaatggaggagatgagaaagtgaagagagcagaggagaagaatggtcagttatgtagagaagaagaagagtg  11923700                           <---------ANAC46                        --------->ALFIN1                       -------->ABF1                       <-------MYC2                       <-------PIF5                       ------->PIF5                       <-------MYC4                       ------->MYC4                       ------->MYC2                       <-------MYC3                       ------->MYC3                      <---------ANAC55(2)                      ==============MYC_MYB                      <---------bZIP60(2)                      <---------TGA1a                      <---------O2                      --------->TGA1a                      --------->ANAC55(2)                      --------->O2                      >>>>>>>>>>HY5                      >>>>>>>>>>AtMYC2             --------->TGA1a             <---------TGA1a<-------GAMYB             =======================MYC_MYB   *TSS                                                  <             <---------O2  <---------ANAC58 <---------ANAC58    --------->ICU4                      <        ----------->HVH21  <---------ANAC58 <---------ANAC58  <---------ANAC55(2)                   < <---------ANAC58     >>>>>>>>>>ABI5        <---------ANAC46--------->YAB1                          - <---------ANAC46 ----------------->PIF3(1)--------->ATHB12<---------ATHB12             ------------>CBF <---------ANAC58----------->HVH21 <---------YAB1      ------------>CBF  ------------>CBF       <---- --->ALFIN1  --------->O2 <------NtERF2<---------MYB46(3)--------->WOX13(1)         --------->ARR14(2) ======================MYC_MYB  <---------YAB1--------->ALFIN1--------->ANAC55(2)   <---------ARR14(2)   gaggcttggactgacacgagtgacacgtggcgttgttatagttgttgagtggcgattttcaatcacatgatgagggtcaatactcaaatactcaatggca  11923800                                                          <-------TEIL                                                          <---------TOE2(2)                                                          <---------TOE1(2)                                                          ------->TEIL                                                        <---------SPL7                       <---------TOE1(3)               <---------ANAC46                           <--                 --------->GLK1(2)                     <---------ANAC58                           <--       --------->ARR14(2)                              <---------ANAC58                      --------       --------->GLK1(2)----------->GT1               <---------------AtSPL3             <---------At4g35610       <---------ARR14(2)       <----------DOF2       --------------->AtSPL3             --------->At4g35610 ---------ANAC58 <---------ARR14(2)          <---------CCA1(1)                           <---------ZAT2 ---------ANAC46 --------->ARR11(3)          <---------RVE1(1)                          ------>NtERF2 ---------ANAC58 --------->ARR14(2)         --------->ARR11(3)                         <---------DEAR3(1) ---------->RAV1(2)    <---------TOE2(3)    <---------ARR11(3)  <---------AtMYB61   ----------->HVH21 --------CBF    <---------GLK1(2)       <------ZmHOX2a(1) --------->SPL7          --------->GLK1(2)   ttgcctgagaatatgtgagaatcttgaggttatactttgggaggacgatattttgatgcgtacgttttggtccgagtggctaagaatcgacggctgagat  11923900                                    ------>ZmHOX2a(1)                                <---------PCF2                                               --------  <------MYB83                  --------->TCP15(1)                                      <---------MYB52(1)  <---------MYB46(3)           <------MYB46(1)                                         <-------GAMYB  <------MYB46(1)             <---------MYB46(3)                 <---------ANAC46   ------->TEIL ---------RAV1(1)      <----------DOF2<---------YAB1            <------NtERF2     <---------SPL7 -------MYB46(3)      <-----------------AGL3             <-------GAMYB    ------>ZmHOX2a(1)  -------- --->ARR10    --------->TOE1(2)<------MYB83             <-----------RAV1(1)     ------->TEIL --------   ttgttggttttgggaaactgggactcttttagtgggtcctatgcttacacaagtgtttctgttgtcgtcgtgcatcctcatgaacgtaccgttggacgac  11924000                                                                                        <-----------GT1                                                                                       <---------YAB1                                                                                     <---------ICU4                                                                                    <---------YAB1                                   --------->GLK1(2)                                --------->ICU4                               <---------HSFB2a(2)                                --------->YAB1       ---------->ID1          --------->HSFB2a(2)        <---------AHL20(2) --------->MYB46(3)   <---------ANAC58      <---------At5g28300          --------->AHL20(2)--------->TOE2(3)   <---------ANAC58     <-----------GT1               <---------AHL20(2)--------->TOE1(3) ->ANAC46               --------->MYB52(1)           <---------AHL20(2)<---------At4g35610 ->ANAC58         --------->AHL20(2)         --------->ICU4     <---------ANAC46 <---------ATHB12 ->ANAC58     ----------->GT1 <---------ETT(2)   <---------AHL20(2)    --------->At4g35610   atttttcttggcccatttgttaaaattcacggtcgagaatttttgtcatgttttatttatttagttttgtgtaagcttaaccactgattattactaaata  11924100                                                           --------->ARR14(2)                                                        <---------ANAC58                                                        <---------ANAC58                                                        <---------ANAC55(1)                    <---------ICU4                      <---------ANAC46            <---------AHL20(2)             <-----------GT1 <---------ARR14(2)           --------->AHL20(2)    <---------WOX13(1) <---------ANAC58       <---------TOE2(3)      <---------YAB1        <---------ANAC58          <-------TEIL      ----- --------->ICU4  --------->YAB1--------->ATHB12     <---------ANAC46<---------AHL20(2)          -----   gcaatttttaagtttaaattgataatgtcaatgtgattgcataattttcaagtttcttgcgtatatatgtataatttagattcacatatatcagaggcta  11924200  Previous    Next  AGI:  At1g32900.1    Description:  starch synthase, putative. Identical to Probable granule-bound starch synthase 1, chloroplast precursor (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to ATSS2 (STARCH SYNTHASE 2), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G01180.1); similar to Granule-bound starch synthase 1, chloroplast precursor (Granule-bound starch synthase I) (GBSS-I) (GB:Q00775); similar to unknown [Populus trichocarpa] (GB:ABK95833.1); similar to granule-bound starch synthase (GB:1718316A); contains InterPro domain Starch synthase catalytic region (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose Range:  from: 11920370    to: 11923746    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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