Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------MYB52(1)                                                                 <--------P                      --------->HSFC1(2)                       <---------MYB46(3)               --------->At4g35610                             <---------DEAR3(2)                <---              <---------MYB46(3)                      <---------SPL7<---------RAP2.3(3)          <---           ------------>AtMYB77                       --------->LBD16 <---------ZAT18           -----      <-------TEIL    --------->HSFB2a(1)            --------->DEAR3(1) --------->ZAT18        ------  <-----------RAV1(1) <---------HSFC1(2)            <---------LBD16<------MYB46(1)     ============== --------WRKY18(1)    <---------HSFB2a(1)         --------->ANAC46 <------MYB83        ============== -->ARR11(3)<---------At4g35610                   --------->ANAC58--------->ALFIN1     ------>ZmHOX2a(2) ---ARR11(3)--------->At4g35610                   --------->ANAC58<---------MYB46(3) <---------ARR11(3)   ttgactggtgcatcagcagttggaagcgtcgcgataccatcgattctaaaacacgccggactcatcggttggggcgcattagcccttgatctctcatcct  11695200                                                                                                 ----          <---------O2                                                                           <---          --------->O2                                                                          <----         ------>ZmHOX2a(1)                                                ---------->DOF2     ------- ------TOE1(2)                                                         <---------AHL20(2)     <------ ------TOE2(2)  <---------------AGL15                              --------->REM1(1)       --------->YAB1 ->ZmHOX2a(1)   --------------->AGL15            ----------->HVH21<-------TEIL     --------->ANAC46 --->TOE2(2)    <----------DOF2          --------->At4g35610   <---------At4g35610 --------->ANAC58 ===============HOX2a_HOX2a              <---------GLK1(1)     --------->At4g35610 --------->ANAC58 ==HOX2a_HOX2a <-----------------AGL2  <------ZmHOX2a(1)<---------ICU4 --------->AHL20(2) <-------TEIL   acgttgtcttcctcgtggctattttgggttacatttgcataggagatgccagtgacaactattacagctacatttaaaaagacacacacaaattcatcat  11695300 ----->ATHB12 ------ICU4                       <-----------GT1              --------->ANAC58 -----YAB1      ---------->DOF2   --------->ZAT6 <---------WOX13(1)   --------->ARR11(3)          <-- -->YAB1  --------->TOE2(3)     <-----------GT1 <------------CBF      <---------ARR11(3)         <--- ---ICU4  --------->TOE1(3) <----------DOF2 <---------MYB52(1) --------->ANAC58                 -----   catttgtttaaacctcaacaaagtctcagccttttatcacttccccgttcgattgatgcttcgaaacgaaaacatcttgtttctatggaatgactcactg  11695400                                                                         <---------ANAC46                                                                         <---------ANAC58                                                                         <---------ANAC58                                                                         <---------ANAC55(2)                                                                         --------->ANAC55(2)                                                                         <---------ANAC55(1)                                                               <------MYB83                                                               <---------MYB46(3)                                                              <---------AtMYB61                                     ------->TEIL           <---------ANAC58       <-----------GT1          <---------ANAC46            <---------ANAC46                       <-  <---------GLK1(2)         <-----------HVH21               <---------ANAC58                    <---- -------WOX13(1)         <---------ANAC58          <---------AHL20(2)  <-----------GT1         ------ ---------CBF            <---------ANAC58      --------->ATHB12<------MYB46(1)                 ------ ---->ATHB12             <---------ANAC46 <---------YAB1   <---------MYB46(3)   <---------TOE2(3) <--   attggattttcacaagtttaagagtttgtgtgtcaagtgtatgtatgaatgattttttttttgggtggttttgttacgttttgatgtatagaacatattt  11695500             ----------->TBP            <---------ARR11(3)            --------->ARR11(3)    <------MYB46(1)    <------MYB83    <---------ANAC46                                                         --------->DAG2   --------->MYB111(1) <-----------GT1                                      ---------->DOF2  -------- --------AHL20(2)--------->AHL20(2)                                  --------->At4g35610     <------- -----AHL20(2)   <---------AHL20(2)                                  --------->ZAT2          -------- --->ICU4  <-----------TBP<----------DOF2                           --------->GLK1(2)        <------- --->AHL20(2)--------->AHL20(2)          ----------->GT1       ---------->DOF2            <---------ANAC58 -------YAB1<---------AHL20(1)  ---------->DOF2        <----------DOF2 ----------->GT1    <---------ANAC58   attatttggtggaatatatataaattttctttacaaaagcatattgaaaaactgagtcttttagataaagaagctgtgaaaagtgtttgaatgcgagctc  11695600                                                      <---------ANAC58                                                      <---------ANAC58                                                    <---------ARR14(3)                                                    --------->ARR11(3)                                                    <-----------ARR10                                                    --------->ARR14(3)                                                    <---------AHL20(1)                                                    <---------ARR11(3)                          -----                                                    --------->AHL20(1)                          <----                                                    <---------ARR14(2)                         ------                                                    --------->ARR14(2)                     <---------ANAC55(2)                                             ------>ZmHOX2a(2)                             --------->ANAC58                                           <---------ARR14(3)                              --------->ANAC58                                           --------->AGP1                                  --------->ANAC46                                           --------->ARR14(3)                              --------->ANAC55(2)                    <----------DOF2        <---------ARR14(2)                             <---------LBD16    ---------->DOF2<---------ANAC58        --------->ARR11(3)                            --------->MYB52(1)  --------->REM1(2)<---------ANAC58        --------->ARR14(2)                       <---------MYB59 ->ZAT2         ---------->ID1             <---------ARR11(3)                     --------->MYB52(1) --ZAT2 ---------->DOF2       <---------ICU4<------ZmHOX2a(2)                    --------->CCA1(2) ->At4g35610    <---------RAP2.6(2)        <---------GLK1(2) <------NtERF2      --------->ARR11(3) --At4g35610  <-----------RAV1(1)         <---------CCA1(2)<---------ANAC46 --------->CCA1(2)  ------   tctgtgtaaagaaagtttgtggctttctctcaaaattatctctcagatcttcaatatcttgtcgtcgatactatggagataagataccgaattacggaag  11695700                                                                      --------->ANAC58                                                                      --------->bZIP60(2)                                                        <---------ARR11(3)                                                        --------->ARR11(3)     <---------ANAC58         --------->ARR14(2)                             <---------ARR14(3)     <---------ANAC58         <---------ARR14(2)                            <------MYB46(1)--------->ANAC58 ---->At4g35610                                        <------MYB83   --------->ANAC46 -----At4g35610           <---------ARR11(3)  <---------At4g35610    ------->TEIL --->ANAC58               --------->ARR11(3)<---------CCA1(2)     --------->AtLEC2           ------>ZmHOX2a(1) --->ANAC58       <---------ATHB12     ---------->ID1 <---------AtMYB61  <---------ALFIN1   ---------   ctatcgtcgaggtttctctaatgaagaagctcttatacttcgtcgtttatctgagggaggtcttgtacatgcacgccacttgctcgacaaaattcctcag  11695800                                                           --------->ARR14(2)                                                 --------->ANAC46                                               --------->ANAC58            ------->GAMYB<---------ZAT18       --------->ANAC58        --------->MYB46(3)                    --------->ZAT18          --------->ANAC58 <------ZmHOX2a(1)  <---------ZAT14       <---------------AtSPL8       --------->ANAC58 >TOE2(3) <---------At5g28300 <---------------------WRI1   <---------ARR14(2)   agaggaagtatcaaccgtgttgtttactggacttcgcttcttagtaagtacgcgaaaactggatacttggatgaagcaagggttttgtttgaagtaatgc  11695900               <---------ANAC58               <---------ANAC46               <---------ANAC58               <---------ANAC55(1)              --------->MYB52(2)            <---------MYB52(1)            <<<<<<<<<MYB98          ----------->GT1               <---------YAB1            <---------ANAC58        --------->ARR11(3)              ----------->GT1           <---------ANAC46        <---------ARR11(3)       <---------ANAC46   <------ZmHOX2a(1)                --------->GLK1(1)    <------ZmHOX2a(1)         ----------->HVH21<---------REM1(1)  <---------ANAC58   <---------GLK1(1)   ctgagaggaatatcgttacttgtaatgcgatgttgacgggttatgttaaatgtaggagaatgaatgaggcttggacattgtttagggaaatgccgaagaa  11696000                         <---------ZAT18                   <---------ANAC58 <---------O2                   <---------ANAC58 <---------bZIP60(1)                 <---------YAB1     --------->bZIP60(1)   --------->At4g35610                 --------->ICU4  ----------->HVH21        <-------GAMYB                            <-     <---------ANAC46    <---------ZAT14                  <---------At4g35610                     <--     <---------ANAC58    --------->ZAT14               <-------TEIL                               <--     <---------ANAC58    --------->ZAT18     <------ZmHOX2a(1)   <---------MYB46(3)               <--   tgttgtttcttggactgtgatgcttactgcgctatgtgacgacggaaggagtgaagatgcagttgagttgttcgatgaaatgcctgagagaaatgtggtt  11696100  Previous    Next  AGI:  At1g32410.1    Description:  vacuolar protein sorting 55 family protein / VPS55 family protein. similar to vacuolar protein sorting 55 family protein / VPS55 family protein [Arabidopsis thaliana] (TAIR:AT3G11530.2); similar to hypothetical protein OsI_009141 [Oryza sativa (indica cultivar-group)] (GB:EAY87908.1); contains InterPro domain Vacuolar protein sorting 55 (InterPro:IPR007262) Range:  from: 11693812    to: 11695546    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g32415.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G53600.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40536.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 11695591    to: 11697876    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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