Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                <---------At4g35610                                                                          <-----------RAV1(1)                                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                          xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                         <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                         --------->ARR11(3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->LBD16    --------->AHL20(1)            <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      ------>ZmHOX2a(1)  <---------ARR11(3)          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    ----------->RAV1(2)  <---------AHL20(1)         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)             - ---->ARR14(2)         <---------TOE2(3)        xxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ZAT18    -- -ZmHOX2a(1)           <---------YAB1           <---------CCA1(2)     --------->ZAT14              -- ->ANAC58      <---------At4g35610             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               -- ->ANAC58      --------->At4g35610----------->GT1--------->ARR11(3)   <---------ZAT14         ------>NtERF2   acttcttcctggcattaagctgattaagatattgatcagtaaaaagacttaaatcttgaaggtcccttgcaccatactgttgctcactcatcttgcctcc  11323800                                                                                              -------                                                                                            ---------                                                                                            ---------            --------->AHL20(2)                                                           --------->LBD16         --------->YAB1                                                                 --------->ANAC58    <---------ATHB12                                                                    --------->ANAC46   --------->ANAC58                                                                     --------->ANAC58   --------->ANAC58                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)              --------->PCF2  --------->WOX13(1)       ----------->ARR10                                         --------->PCF5 ------>GAMYB          <---------At4g35610                                         <------MYB83 ------->ANAC58        --------->At4g35610    <---------ANAC46                     <------MYB46(1) ------->ANAC46        <---------ZAT2      --------->ANAC46                       --------->MYB59 ------->ANAC58        --------->ZAT2    <-----------GT1                <----------DOF2<---------LBD16   aacgcaatcaaacataaaatgcttaagctgagtttctcggttttcacgacgtagactctctagtttgttttgttctttggtgatttggtcccgcaagaaa  11323900                                      <---------GLK1(2)                                     <------NtERF2                                    ------>NtERF2                                    <---------ATERF1(1)                                   <---------DEAR3(1)                                   --------->DEAR3(1)                                   <---------ATERF1(2)                                   --------->ATERF1(2)                                  <---------LBD16                                  --------->RAP2.3(1)                                  --------->DEAR4(2)                                  --------->ATERF1(1)                                         <------                                  <------NtERF2                                          <---------ALFIN1                                 ------>NtERF2                                         --------->RAP2.6(2)                                 <---------RAP2.3(1)                                   <---------ALFIN1                                 <---------ATERF1(1)                                   ----------->RAV1(1)                                --------->ETT(2)                                    ------>NtERF2                                <---------ETT(2)                                   <---------RAP2.6(2)                                <---------DEAR3(1)                                --------->RAP2.6(3)                              <-----------HVH21                                  <---------WRKY18(1) xxxxxxxxxxxxxxxx>smallRNA(i)<-----------RAV1(1)           <-----------GT1      ----------->HVH21 <-- --->DOF2  <---------ICU4 <---------MYB52(1)          --------->LBD16           --------->WRKY12  <-- >ANAC58  <---------YAB1--------->HSFB2a(1)      ------->TEIL                 <-------GAMYB  <-------GAMYB >ANAC58--------->YAB1  <---------HSFB2a(1)      <---------GLK1(1)           <---------MYB46(3)   ---   gtctcatgactcatcatcgtcttggaccgttctgtcgccggcttctccatgaactccgaaatcacctcttgaacaccttcggttgacggccacaccgttg  11324000                                     <-----------HVH21                                    <---------bZIP60(1)                           <-------MYC2                           ------->MYC2                           <-------MYC4                           ------->MYC3                           <-------PIF5                           <-------MYC3                           ------->PIF4                           <-------PIF4                           ------->PIF5                         <xxxxxxxxxxxxxxxxsmallRNA(i)                        <---------ALFIN1                   <-----------GT1  --------->bZIP60(1)                   <xxxxxxxxxxxxxxxxsmallRNA(i)       --------->ZAT2                   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->SPL7<---------At5g28300               <---------ZAT2     --------->MYB52(1)<---------ZAT18----------->HVH21  --------->HSFB2a(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------HSFC1(1)<xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------At4g35610  <---------HSFB2a(2) <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                ------>ZmHOX2a(1)        <--- ---MYB52(1) <---------ZAT14   <----------DOF2    <-----------HVH21    --------->TOE2(3)     ------>ZmHOX2a(1) -------ARR14(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <-------PIF5 <---------ANAC58     <-------- -------GLK1(2)   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) --------->At4g35610                   <-------- ------>ARR14(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   ------->PIF5 <---------ANAC58------>ZmHOX2a(1)   gattctcgaacggactgtagattaccgcacatgctttgatgtcacagagagttgtcagctcgtggagtttcttccttatccctgcattcctcttcctgaa  11324100                                                          <----------DOF2                                                        <---------YAB1         ---------->DOF2                               --------->ARR11(3)        --------->LBD16                                <---------ARR11(3)       --------->ANAC46                            <---------ICU4   <---------GLK1(1)       --------------->AtSPL8 <---------YAB1         <----------DOF2 --------RAV1(1)           <---------------AtSPL8 --------->ICU4 <-----------GT1 ---------AGL3            <---------YAB1          ------>ZmHOX2a(1) <----------DOF2               <-- ---------AGL2   --------->WOX13(1)            ---------->ID1   <<<<<<<<<<GT-3b                   <--   tgtggctctccgaaagtgtctatcaggtatgagtactaacttagtcttcgtcctcattatctttatttttcttttctttggtgtttgtgtttgtttagtt  11324200                                                                     --------->HSFB2a(2)                                                                  <---------ARR14(2)                                ----------->GT1                   --------->ARR14(2)                             --------->DAG2                    --------->ANAC55(2)                            ---------->DOF2             <---------ANAC58                            -                         --------->ANAC58               <---------ANAC58       <---------AHL20(2)   <                         --------->ANAC58               <---------ANAC46      <---------AHL20(2)  <--           ----------->GT1------->GAMYB            --------->ALFIN1  <---------HSFB2a(2)  <---------At5g28300 -------ANAC58 --------->AHL20(2)         <-----------GT1      <---------ANAC55(2)       <-----------GT1 -------ANAC58 <-----------TBP--------->DAG2  <---------LBD16<-----------GT1  --------->AHL20(2) ----   tcttggcccaagactgtttatatagcaacgaaaagggtgattttttactcagggtgtggcttatcacgtttctggactcattaatttgtagttacagcat  11324300                                     --------------->AGL15                                     ===========================================================MADS_MADS                                     <---------ATHB12                                 --------->ZAT18                                 <---------ZAT18                              --------->MYB59                          --------->ATHB12                    --------->ARR14(2)                         <---------AHL20(2)             --------->ATHB12        --------------->AGL15                        <---------WOX13(1)             <---------TOE2(3)       ======================                       <------------CBF                <---------YAB1   <-----------GT1 -------->ARR11(3)    <---------AHL20(2)         <---------YAB1     <----------DOF2                <- ---------ARR11(3)    --------->ATHB12    ---------->DOF2<------------CBF  <----------DOF2       <--- -------AHL20(2)     <---------AHL20(2)  <---------AHL20(2)   <---------GLK1(2)----------------->AGL3 ----->AHL20(2)      --------->AHL20(2)  --------->AHL20(2)   <---------ARR14(2)<---------------AGL15   taaatcttttggctactgtcttattaattgattaggccactaattaaagctatgactaagattggattctcttttctctttactaaatatagtttatctt  11324400                                    <----------DOF2                <---------------AGL15                                         <----------DOF2           <---------DAG2        <---------TOE2(3)                         <-----------GT1           <----------DOF2   --------->YAB1                      <---------AHL20(2)    <-----------GT1    ----------->GT1                        --------->AHL20(1) ===============================MADS_MADS     ----------->GT1 <---------AHL20(1) --------CCA1(2)<----------DOF2  <---------TOE1(3)            <---------AHL20(2)                    < ------ANAC46   --------------->AGL15  --------->YAB1         --------->AHL20(2)   <----------DOF2 <-   cgtatattactcacttttcttttaagagtaatattaagctttgataaactgtgaaaatttctaatattttaagtgtttttcttttcttttcgaatagagt  11324500                                                                                                 ----                                                                                                 ----                                                                           <---------HSFB2a(2)   ----                                                                          <---------LBD16        ----                                   ---------->DOF2                        <---------ANAC46   <-------                              <---------ARR11(3)                     <---------AHL20(2) --------->ANAC55(2)                              --------->AHL20(1)                     <---------ICU4     <---------ANAC58                            ------->TEIL                             --------->AHL20(2)<---------TOE2(3)          <-----------GT1<---------YAB1                              --------->ATHB51 --------->MYB52(1)   <---------At4g35610 <---------ICU4                        --------->YAB1--------->HSFB2a(2)<------   --------->At4g35610 --------->YAB1           <----------DOF2     <---------AHL20(2)<-----------GT1 ---------At5g28300  --------->ARR11(3)     <------ZmHOX2a(1)----------->GT1  ---------->DOF2<------- ----------GT1 --------->AtLEC2  <---------AHL20(2)     <<<<<<<<<GATA-1  <---------LBD16<---------ANAC58   tttacagcttaatttccatgtaaaatcatgaatatataaaagcttaggaactttgtttatctatagtaaaattatttcgggaaagaattaacgtgtctta  11324600                                                                                           <---------AHL20(2)                                                                                           <---------ICU4                                                                                          --------->AHL20(2)                                                                                        --------->YAB1                                                                                      --------->AHL20(2)                                                                                   <---------AHL20(2)  --------->AHL20(2)                                                               --------->AHL20(2)  --------->ICU4                                                                   <---------AHL20(1) ----->ANAC58                                                                      --------->AHL20(1) ----->ANAC46                                                                   --------->YAB1 <----- ----->ANAC55(2)                                                               <---------YAB1  ------ ----->ANAC58                              <---------TOE2(3)                   <---------AHL20(2) --ANAC58                                ---------->DOF2      --------->DAG2  --------->AHL20(1)   <- ---SPL7                          --------->ETT(2)           ---------->DOF2  <---------AHL20(1)  --- --ANAC58   --------->TOE1(2)     <---------ETT(2)      ----------->GT1       --------->AHL20(2)<----   cgaaatatttagaacgagcgaaaattttgaaatatgtagacattaaaggaagcctacatagaaaaaagtttgtaaaccaatataataaaataataaatat  11324700  Previous    Next  AGI:  At1g31640.1    Description:  AGL92; DNA binding / transcription factor. similar to AGL86, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G31630.1); similar to putative MADS-box transcription factor [Arabidopsis lyrata] (GB:AAO42467.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) Range:  from: 11322673    to: 11324157    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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