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AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                                  --
                                                                                              ------
                                                                                              <-----
                                                                                              <-----
          <---------MYB46(3)                                                                  ------
          --------->MYB55(2)               <----------CDC5                                   -------
         --------->ALFIN1                  --------->ALFIN1                                 <-------
         <---------AtMYB61           --------->DEAR3(2)                                     --------
        <-------GAMYB           <------NtERF2                                              ------>MYB83
        <------NtERF2          <------NtERF2           ---------->DOF2                     ------>MYB46(1)
       <---------MYB46(3)      --------->LBD16 <---------ATERF1(1)                       --------->TOE1(2)
      <---------DREB2C(2)    <---------LBD16 <------NtERF2                               --------->AtMYB61
      <---------DEAR3(1) --------->ATERF1(1)--------->LBD16                       <------NtERF2<----
     <---------ABI4(1)<---------At4g35610 <---------LBD16                <-----------HVH21--------->MYB52(1)
 
cgacaatcggcggtggtagtattcgagcggaggccggagaacagacgcggaggctacttaaaccgatgaacaacacggtcgaggcagagagaccaacgat  11249200
                                                                                                  --
                                                                                                 ---
                                                                                                 ---
                                                                                                 ---
                                                                                                 ---
                                                                                             <------
                                                                                            <-------
                                                                                            --------
                                                                                           <-------GAMYB
                                                                                          <---------DEAR3(2)
                                                                                          <---------MYB46(3)
                                                                                         <---------DEAR3(1)
                                                                                        <------NtERF2
                                                                                        --------->ATERF1(1)
                                                                                        <---------MYB52(1)
                                                                                       <---------DEAR4(2)
                                                                                       ------>NtERF2
                                                                                       <---------ERF1
                                                             <---------MYB46(3)        --------->LBD16
                                                             <---------DEAR3(2)        ------------>AtMYB77
                                                            <---------DEAR3(1)         <---------ATERF1(1)
                                                           <------NtERF2               <---------RAP2.3(1)
                                                         --------->TGA1a              <---------ATERF1(2)
                                                         <---------TGA1a              --------->ATERF1(2)
                                                         --------->O2  --------->ZAT14<---------RAP2.3(2)
 --------->YAB1                                          <---------ANAC46            <---------LBD16
---->ZmHOX2a(1)                                          <---------ANAC58           ----------------
--->ARR14(2)                                             ===========================================MYC_MYB
----ARR11(3)                                             ==========================================MYC_MYB
----ARR14(2)                         <---------YAB1      <---------ANAC58       --------->ZAT2  <---
--->ARR11(3)       <---------HSFB2a(2)                   <---------O2  --------->LBD16--------->DEAR3(1)
>GAMYB<-----------GT1              --------->YAB1     <---------MYB52(1)        --------->At4g35610
--ATHB12           --------->HSFB2a(2)               <-----------HVH21--------->ANAC46<---------DEAR3(1)
->MYB46(3) <---------MYB52(1)     <---------ATHB12  --------->ANAC46 <---------LBD16<---------ATERF1(1)
--ZmHOX2a(2)--------->SPL7        --------->ICU4  ------>ZmHOX2a(1) ------>ZmHOX2a(1)--------->ATERF1(1)
 
cctctcatgaaaccgttcgtctcgagaaactcgtgcaatggtgattccccttcctccgtcgcgtcggtttcctccgcagtagaagctcgccggcggtttc  11249300
            --------->RAP2.3(1)
            <------NtERF2
           --------->ABI4(1)
           ------>NtERF2
          --------->ANAC46
          <---------DEAR3(1)
          --------->RRTF1(3)
         --------->ATERF1(1)
         --------->ERF1
         --------->DEAR4(2)
         --------->ORA47(2)
         --------->RAP2.3(1)
        <---------ATERF1(1)
    <---------ICU4
   --------->ICU4
------->LBD16
------>ANAC58                                                                             <---------
------>ANAC58 <---------SPL7                                                              <---------MYB52(1)
------>ANAC55(1)                                           <---------ANAC58              --------->At4g35610
------>ANAC46--------->DEAR3(1)                            <---------ANAC58              -----------
-----HVH21--------->RAP2.3(2)                  ------->GAMYB                       --------->YAB1
--ARR14(2)--------->RAP2.3(3)          *TSS   --------->MYB46(3)                  <---------ATHB12
->ARR14(2)--------->DEAR3(1)        ----------->GT1        <---------ANAC46     --------->WOX13(1)
------->TaNAC69(2)          <-----------GT1 --------->MYB52(1)     --------->TOE2(3)   --------->MYB46(3)
------LBD16<---------ATERF1(1)     <---------AtMYB61------------>CBF          ------------>CBF
 
acggaaataatcgccgccgtagccatcgatataacgcgatggtgaaacaacggacaacaatggcttctaatctcaaaccggttcaatcaaaccgctgggc  11249400
                                                                                  --------->ATHB12
                                                                                  --------->ATHB51
                                                                                  <---------ICU4
                                                                                  -------->HAHB4
                                                                                  <--------ATHB1
                                                                                 <---------ATHB51
                                                                               --------->YAB1
                                                                              <---------ATHB12
                                                                          <------NtERF2
                                                                      <---------ZAT2
                              --------->YAB1                          --------->At4g35610
  <---------ANAC55(2)         <--------ATHB1                          --------->ZAT2
  --------->ANAC55(2)         <---------ICU4                          <---------At4g35610
  --------->TOE2(3)           --------->ATHB12                        --------->STY1(2)
 <-----------------AGL1      --------->ICU4                      --------->ARR11(3)
 ----------------->AGL1      <---------ATHB12                  <---------TOE2(3) <---------YAB1
 ----------------->AG     ------------>ATHB5                   <---------TOE1(3) --------->ICU4    -
-CDC5                    ------------>CBF                  --------->At4g35610<---------ATHB51     =
>RAV1(2)               <---------PCF2>>>>>>>>>>>>>>>>>LFY  <---------At4g35610--------->ICU4       =
 
ttataccgtaatgggccttaaaaatgggcccaatgatttcgaccattgtagagattaggcttagctaaggtctagctggcaataataattgggttttatg  11249500
                   --------->ALFIN1
                 --------->ALFIN1
                ------->MYC2
                <-------MYC4              <---------ANAC58
                <-------MYC2              <---------ANAC58
                ------->MYC3            --------->ALFIN1
                ------->MYC4           ------->MYC3
                <-------MYC3           <-------PIF4
               --------->O2            <-------MYC2
               --------->ANAC55(2)     --------->TOE1(2)
               --------->TGA1a         ------->MYC4
               <---------TGA1a         ------->MYC2
               <--------ABF1           <-------PIF5
               <---------O2            ------->PIF5
               <---------ANAC46        <-------MYC4
               <---------ANAC55(2)     <-------MYC3
          ----------->HVH21           ===================================================bZIP_DOF
        <-------GAMYB                 --------->TGA1a
        =================MYC_MYB      <---------TGA1a
        <---------At4g35610     <------ZmHOX2a(2)
        ========================================MYC_MYB
        --------->At4g35610    --------->ARR14(2)
       <---------DEAR3(2)      --------->ARR11(3)
       <---------MYB46(3)      <---------ARR14(2) ------>MYB46(1)
       --------->MYB55(2)      <---------ARR11(3)<---------ALFIN1
      <---------DEAR3(1)<------MYB46(1)------->PIF4
      <---------At1g77200 --------->WRKY18(1) --------->PCF2            <---------SPL7
    <-----------HVH21   <------MYB83 ------------>OsbHLH66       <------------CBF         --------->ANAC58
--------->DOF2------------>OsbHLH66 <------------OsbHLH66       --------->ATHB12          --------->ANAC58
================================================bZIP_DOF<---------MYB52(1)              ---------->DOF2
=========================bZIP_DOF------>ZmHOX2a(2)------>MYB83 <---------YAB1 <----------DOF2     *TSS
 
aagaaagcgtcggttgacacgtgtgggaggtcaagatcggcacgtgcgagacccacttcgtttcttctcattggtcgtatgctttggagaagaaagcatc  11249600
                                                          ---------->DOF2
                                                       --------->TOE2(3)                  <---------
                                                       --------->TOE1(3)       --------->DAG2
           <---------ALFIN1                  --------->ZAT14                  ---------->DOF2
   <<<<<<<<<TBF1                     <-----------GT1   --------->YAB1      --------->AHL20(2)    ---
<<<<<<<<<TBF1              --------->ZAT6    <---------ZAT14          --------->YAB1      <---------
 
ttcttcttcttcacacactctctctctctcactctagttttctctctcttcactcttaccataaatcacacaaacaaaataaaaagtcgattcctttttt  11249700
                                                                                                   -
                                                                                                   <
                                                                                                   <
                                                                                                   -
                                                                                                  <-
                                                                                                 ---
                                                                                                 <--
                                                                                           ------>ZmHOX2a(1)
                                                                                           =========
                                       <----------DOF2                                     =========
                                      <---------ANAC58                 ------>ZmHOX2a(1)------>ZmHOX2a(1)
    <-----------GT1                   <---------ANAC58                 =============================
---------------ANAC81     <---------AHL20(2) <---------At4g35610       =============================
------->ID1   ------>ZmHOX2a(1)     <-----------GT1        <---------At4g35610          ============
-DOF2<-----------GT1    <---------AHL20(2)   --------->At4g35610 <<<<<<<<<TBF1          ============
 
gttttttttatcttctccttaagttatatttttttttttttgctttacagctcaaattagtcatcttcttcttcctctgtctcaattcttcctcctctcg  11249800
----->ZmHOX2a(2)
-----------------AGL3
-------TEIL  <-------TEIL
---------------->AGL3
-----ZmHOX2a(2)
------>ARR14(2)
-------ARR14(2)<---------YAB1
=====HOX2a_HOX2a                             ---------->DOF2
======HOX2a_HOX2a                        <----------DOF2
=====HOX2a_HOX2a      <---------ICU4    <---------ANAC58                                       <----
======HOX2a_HOX2a    --------->ICU4     <---------ANAC58                        <---------ANAC46
======HOX2a_HOX2a <---------YAB1    <---------MYB52(1)      --------->YAB1   --------->ALFIN1  -----
=====HOX2a_HOX2a--------->YAB1    <---------YAB1        --------->TOE2(3) --------->DAG2   <--------
 
gatccatttttagaggttcttataattcttactaattctgtttgcttttaaagctataacctttgatattgttggaaagagtggggttttgggtcttttg  11249900
                                         <---------YAB1
                                       <---------MYB46(3)
                                     <-------GAMYB                            <---------ANAC46
                              <---------ARR11(1)                              --------->ANAC55(2)
                              <---------ARR14(2)                      --------->LBD16
                              ------->TEIL                          <---------LBD16
     <----------DOF2          <-----------ARR10                   --------->ARR14(2)
    <---------MYB52(1)       <---------CCA1(2)                    <---------ARR14(2)
-----At4g35610               <---------ARR14(1)<---------ZAT6  <------MYB46(1)<---------ANAC55(2)
---->At4g35610     <---------AHL20(2)<---------At4g35610       <------MYB83   <---------ANAC58     <
--DOF2         ----------->GT1--------->ARR14(2)       <------ZmHOX2a(1)      <---------ANAC58    <-
 
ctgaatcgttttttggatttgttatattgttcgaatcttcagttgttattgtgttataggattggatggtatctgggaatttcgtaatctatgttaagct  11250000
                            --------->ARR11(3)
                          --------->ICU4
                          <---------YAB1                         <---------YAB1
                        --------->YAB1               <---------At4g35610
                       <---------YAB1                --------->At4g35610
          <---------At4g35610                 <------NtERF2      <---------------AGL15
---------At4g35610     --------->ICU4 <---------MYB46(3)         --------------->AGL15           <--
--------AGP1  <----------DOF2     <---------TOE2(3)<-----------GT1               ---------->DOF2 <--
 
agagctgtttttgagctcttttgttgatgatgattttgagattgttggccgaatttagctctcgttttctgattttagcaattggaaagtgtgtattggt  11250100
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AGI:  At1g31410.1   
Description:  putrescine-binding periplasmic protein-related. similar to unnamed protein product [Vitis vinifera] (GB:CAO70776.1); contains InterPro domain Bacterial periplasmic spermidine/putrescine-binding protein; (InterPro:IPR001188)
Range:  from: 11246895    to: 11249340    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At1g31420.1   
Description:  leucine-rich repeat transmembrane protein kinase, putative. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G35620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO70777.1); similar to Os03g0266800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049659.1); similar to hypothetical protein OsI_010608 [Oryza sativa (indica cultivar-group)] (GB:EAY89375.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contain
Range:  from: 11249599    to: 11253860    Orientation: Forward
Links:  TAIR  MIPS 
 
 
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