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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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          --------->ICU4
     ------->GAMYB
   --------->ZAT14
  --------->MYB52(1)                             --------->ANAC58                        <---------YAB1
  ----------->RAV1(1)                            --------->ANAC58                        <------ZmHOX2a(2)
 --------->ANAC46                         --------->WOX13(1)                            <---------ARR11(3)
-------->RAV1(1)               --------->GLK1(1) --------->ANAC46                   ---------->DOF2
----->ANAC46      <---------ZAT18     --------->ANAC58                     --------->ARR11(3)   ----
--->AtMYB61       --------->ZAT18     --------->ANAC58                  --------->YAB1  --------->ARR11(3)
>ANAC46 --------->YAB1   --------->MYB52(1)  --------->YAB1        --------->AHL20(2)  --------->YAB1
 
caacacaacagtcacaattagcgcaatctaacagaaatcaaacgacaatcacacacaacaagagcaaaaaaaaaatcagaacttgaacaaagatcataga  11043300
     --------->TOE2(3)
     ------->GAMYB
     --------->TOE1(3)         ----------->RAV1(1)
   -------->P               --------->ZAT6
  ------->GAMYB           ------>MYB83
 <---------MYB111(1)      ------>MYB46(1)
 <---------ALFIN1         --------->MYB52(1)                      <---------------AtSPL8
 <---------MYB55(2)     <---------MYB46(2)                      ---------->DOF2
 <---------MYB111(2)    <---------MYB111(1)                ---------->DOF2
 --------->MYB46(3)     <---------MYB59               ----------->GT1                             --
 <---------MYB52(2)   ------->TEIL                ---------->DOF2 --------->DAG2 <-----------GT1 ---
----->ANAC46       <---------ATHB12 ---------->DOF2  ----------->GT1  <-------TEIL        <---------
 
ggcaacaaccctaatattccaaatcaacctaacacaacaaaaagagccatagggaaagggtaaaaagaaaaggcacatactttgtaacattctctttatg  11043400
                                                                                              ------
                                                                                              <-----
                                                                                              ------
                                                                                              <-----
                                                                                             <------
                                                                                             -------
                                                                                             <------
                                                                                             -------
                                                                                             -------
                                                                                             <------
                   --------->ANAC46                                                         <-------
                   --------->ANAC58          ----------->HVH21                            --------->ANAC58
                   --------->ANAC58          <---------YAB1         <---------ANAC58 --------->ZAT18
              <-----------GT1        <---------HSFC1(2)             <---------ANAC58 <---------ZAT18
--------->RAV1(2)  --------->AtLEC2  --------->HSFC1(2)        --------->DAG2  <---------At4g35610
---->TEIL     --------->YAB1      ---------->DOF2             ---------->DOF2 <-----------RAV1(1)
-DOF2       ------->TEIL   --------->At4g35610        ----------->HVH21   <----------DOF2 --------->ANAC58
 
aacctgaagaacatgaatcaccatgccactagctgtagaaagcttcttatgacagacatgacacttaaagtgcttagctttctgatgctgcacaagaatc  11043500
   <---------ICU4
   --------->YAB1
--------->YAB1
--->HSFB2a(1)
----HSFC1(2)
--->HSFC1(2)
----HSFB2a(1)                     <---------ALFIN1
-----ARR10                      <---------ALFIN1                            --------->ARR11(3)
-->ARR14(2)                     --------->AtMYB61                           <---------ARR11(3)
---ARR14(2)                    --------->ANAC46                      <---------ATHB12
-->ARR11(3)                  --------->ZAT6                    <-----------GT1
-->GLK1(2)                 <-----------GT1               <<<<<<<<<TBF1--------->ZAT6      <---------MYB46(3)
---ARR11(3)             --------->YAB1         <---------At4g35610 --------->ANAC46   ------>ZmHOX2a(1)
--GLK1(2)             --------->At5g28300      --------->At4g35610--------->MYB46(3)  ==============
 
ttctcatcatcaaactctctatcgcagtaataacaccacaccttctctgtagctctcttcttcttcttacccatcactaaatctttctcctatttgttga  11043600
                                                                     <---------STY1(2)
                                                                 <---------At4g35610             ---
          ------>ZmHOX2a(2)                                   ------>ZmHOX2a(1)    <---------WOX13(1)
    --------->CCA1(2)                                     ------>ZmHOX2a(1)     <---------YAB1   <--
   --------->ARR14(2)                            <----------DOF2 --------->At4g35610      ----------
   <---------ARR11(3)<---------GLK1(1)          --------->MYB52(2)  --------->ANAC58 ----------->GT1
=================HOX2a_HOX2a         ---------->DOF2 ---------->ID1 --------->ANAC58<---------------AtSPL8
 
tttcaagatttgatctcaaaattgaaatctccaatctctcaaaagtctcgttctttgtctccttcctccgctcgctagggtttctaattggtacaaagcg  11043700
                                <---------MYB52(1)
                               *TSS                                                            <----
                         --------->GLK1(2)                                                     <----
                        <---------ARR14(2)        <----------DOF2                     <-------------
                        --------->ARR14(2)        <---------DAG2                      --------------
                  ------>ZmHOX2a(2)            <-----------GT1                        --------->DAG2
                 <------ZmHOX2a(2)         <---------YAB1                             <-------------
 --------->HSFB2a(2)    <---------GLK1(2)--------->AHL20(2)                  <---------AHL20(2)<----
<-----------GT1 <---------ARR11(3)       <---------AHL20(2)        --------->ARR11(3) --------------
------>ARR14(2) --------->ARR11(3)      <---------AHL20(2)  ----------->GT1  --------->YAB1 <-------
-------ARR14(2) --------->ARR14(2)   <---------AHL20(2)     <---------ICU4 <-----------TBP<-------TEIL
>DOF2           <---------ARR14(2)  <---------AHL20(2)      <---------MYB46(3)      ---------->DOF2
 
ttttctcgatttcttctacgatcttcagattctctgttttttatttatttttactttatctaatggttactatcttgtatttataagaaaaggtactttc  11043800
    --------->ICU4
-----ANAC58                              <---------AHL20(2)
-----ANAC46                             <---------AHL20(1)                          <---------YAB1
--AtSPL8              <---------CCA1(2) --------->AHL20(1)                --------->YAB1
->AtSPL8 <---------ANAC58            --------->YAB1                       -------->HAHB4
--AtSPL3 <---------ANAC46            <---------AHL20(2)                  <---------YAB1
-----ANAC58 ---------->DOF2          --------->AHL20(2)                --------->YAB1
->AtSPL3 <---------ANAC55(2)     <---------AHL20(2)                   <---------AHL20(2) <---------MYB46(3)
---DOF2  <---------ANAC58        --------->AHL20(2)            ----------->GT1   <---------YAB1
 
ttgtgtaatatttcgtaaagaacccataactcttgtttaattatatatttttccaaaatgcttagtaagttatataatgatactattagtattggttatg  11043900
                                                                                    ---------->DOF2
                                                                                   <---------AHL20(2)
                                                                                   --------->AHL20(2)
                                                                               <---------AHL20(2)
                                                                               --------->AHL20(2)
               <---------O2                                                   <---------AHL20(1)
             <---------WRKY38(1)                                              --------->AHL20(2)
            --------->WRKY18(1)                                               <---------AHL20(2)
          <------MYB83                          <---------YAB1             --------->YAB1        <--
          <------MYB46(1)                    <----------DOF2              <---------AHL20(2)     <--
       <------ZmHOX2a(1)        --------->TOE2(3)                      --------->AHL20(2)     <-----
   <<<<<<<<<MYB98 --------->ZAT18            <---------DAG2           --------->AHL20(2)--------->ARR11(3)
   <---------MYB52(1)         -------->P     --------------->AGL15    <---------AHL20(2)<---------ARR11(3)
 
ttatccgttaggatggtcaagtggtctaagagcaacctcattagacaactttttatagatgtttttagtataaataaataataaaattaaagacatttca  11044000
                                                                        --------->AHL20(2)
                                                                       <---------YAB1
                                                                     --------->YAB1
                                                                    <---------YAB1
                                                                    --------->ICU4
                                                                  --------->YAB1
                                                              <---------YAB1
                                                              <---------AHL20(2)
                                                           <---------AHL20(2)
                                                           --------->AHL20(2)
                                                          <---------AHL20(1)
     <---------ANAC46                                     <---------AHL20(2)
<-----------RAV1(1)                                       --------->AHL20(2)
-------DAG2                                            <---------ICU4<---------ICU4        ---------
--------DOF2                                       <-------TEIL  <---------YAB1           --------->AHL20(2)
------GT1 ---------->DOF2          --------->TOE2(3)--------->YAB1<---------ICU4          <---------AHL20(2)
 
cttttgttgtgtttaaagtgtctctacagaaacacaaatctcaaactaaaaacattcataatttttttattattattatttatagttttatatttaaaga  11044100
                                                                                   =================
                                                                                 <---------ALFIN1
                                                                               xxxxxxxxxxxxxxxx>smallRNA(i)
                                                                              --------->ANAC58
                                                                       xxxxxxxxxxxxxxxx>smallRNA(s)
                                                                    --------->ALFIN1        --------
                                                                   xxxxxxxxxxxxxxxxx>smallRNA(se3)
                                                        --------->TOE1(1)     xxxxxxxxxxxxxxxx>smallRNA(i)
                                                        --------->TOE2(1)     --------->ANAC46  ----
                                                        --------->ANAC46      --------->ANAC58  <---
             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      ------>ZmHOX2a(1) <-------TEIL  ----------->HVH21
->DOF2    ----------->HVH21                      <---------AtMYB61--------->ALFIN1 --------->TGA1a <
 
catctacatataagtgaccaatgtggatgctctaaggccttagactcaagttttggtcctcgtaagagggtgtgggttcaaaccccacttctgacataat  11044200
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AGI:  At1g30970.1   
Description:  SUF4 (SUPPRESSOR OF FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor. similar to late embryogenesis abundant protein-related / LEA protein-related [Arabidopsis thaliana] (TAIR:AT3G19430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41935.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)
Range:  from: 11040262    to: 11043732    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
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