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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ICU4
------->
GAMYB
--------->
ZAT14
--------->
MYB52(1)
--------->
ANAC58
<---------
YAB1
----------->
RAV1(1)
--------->
ANAC58
<------
ZmHOX2a(2)
--------->
ANAC46
--------->
WOX13(1)
<---------
ARR11(3)
-------->
RAV1(1)
--------->
GLK1(1)
--------->
ANAC46
---------->
DOF2
----->
ANAC46
<---------
ZAT18
--------->
ANAC58
--------->
ARR11(3)
----
--->
AtMYB61
--------->
ZAT18
--------->
ANAC58
--------->
YAB1
--------->
ARR11(3)
>
ANAC46
--------->
YAB1
--------->
MYB52(1)
--------->
YAB1
--------->
AHL20(2)
--------->
YAB1
caacacaacagtcacaattagcgcaatctaacagaaatcaaacgacaatcacacacaacaagagcaaaaaaaaaatcagaacttgaacaaagatcataga
11043300
--------->
TOE2(3)
------->
GAMYB
--------->
TOE1(3)
----------->
RAV1(1)
-------->
P
--------->
ZAT6
------->
GAMYB
------>
MYB83
<---------
MYB111(1)
------>
MYB46(1)
<---------
ALFIN1
--------->
MYB52(1)
<---------------
AtSPL8
<---------
MYB55(2)
<---------
MYB46(2)
---------->
DOF2
<---------
MYB111(2)
<---------
MYB111(1)
---------->
DOF2
--------->
MYB46(3)
<---------
MYB59
----------->
GT1
--
<---------
MYB52(2)
------->
TEIL
---------->
DOF2
--------->
DAG2
<-----------
GT1
---
----->
ANAC46
<---------
ATHB12
---------->
DOF2
----------->
GT1
<-------
TEIL
<---------
ggcaacaaccctaatattccaaatcaacctaacacaacaaaaagagccatagggaaagggtaaaaagaaaaggcacatac
tttgtaacattctctttatg
11043400
------
<-----
------
<-----
<------
-------
<------
-------
-------
<------
--------->
ANAC46
<-------
--------->
ANAC58
----------->
HVH21
--------->
ANAC58
--------->
ANAC58
<---------
YAB1
<---------
ANAC58
--------->
ZAT18
<-----------
GT1
<---------
HSFC1(2)
<---------
ANAC58
<---------
ZAT18
--------->
RAV1(2)
--------->
AtLEC2
--------->
HSFC1(2)
--------->
DAG2
<---------
At4g35610
---->
TEIL
--------->
YAB1
---------->
DOF2
---------->
DOF2
<-----------
RAV1(1)
-
DOF2
------->
TEIL
--------->
At4g35610
----------->
HVH21
<----------
DOF2
--------->
ANAC58
aacctgaagaacatgaatcaccatgccactagctgtagaaagcttcttatgacagacatgacacttaaagtgcttagctttctgatgctgcacaagaatc
11043500
<---------
ICU4
--------->
YAB1
--------->
YAB1
--->
HSFB2a(1)
----
HSFC1(2)
--->
HSFC1(2)
----
HSFB2a(1)
<---------
ALFIN1
-----
ARR10
<---------
ALFIN1
--------->
ARR11(3)
-->
ARR14(2)
--------->
AtMYB61
<---------
ARR11(3)
---
ARR14(2)
--------->
ANAC46
<---------
ATHB12
-->
ARR11(3)
--------->
ZAT6
<-----------
GT1
-->
GLK1(2)
<-----------
GT1
<<<<<<<<<
TBF1
--------->
ZAT6
<---------
MYB46(3)
---
ARR11(3)
--------->
YAB1
<---------
At4g35610
--------->
ANAC46
------>
ZmHOX2a(1)
--
GLK1(2)
--------->
At5g28300
--------->
At4g35610
--------->
MYB46(3)
==============
ttctcatcatcaaactctctatcgcagtaataacaccacaccttctctgtagctctcttcttcttcttacccat
cactaaatctttctcctatttgttga
11043600
<---------
STY1(2)
<---------
At4g35610
---
------>
ZmHOX2a(2)
------>
ZmHOX2a(1)
<---------
WOX13(1)
--------->
CCA1(2)
------>
ZmHOX2a(1)
<---------
YAB1
<--
--------->
ARR14(2)
<----------
DOF2
--------->
At4g35610
----------
<---------
ARR11(3)
<---------
GLK1(1)
--------->
MYB52(2)
--------->
ANAC58
----------->
GT1
=================
HOX2a_HOX2a
---------->
DOF2
---------->
ID1
--------->
ANAC58
<---------------
AtSPL8
tttcaagatttgatctcaaaattgaaatctccaatctctcaaaagtctcgttctttgtctccttcctccgctcgctagggtttctaattggtacaaagcg
11043700
<---------
MYB52(1)
*
TSS
<----
--------->
GLK1(2)
<----
<---------
ARR14(2)
<----------
DOF2
<-------------
--------->
ARR14(2)
<---------
DAG2
--------------
------>
ZmHOX2a(2)
<-----------
GT1
--------->
DAG2
<------
ZmHOX2a(2)
<---------
YAB1
<-------------
--------->
HSFB2a(2)
<---------
GLK1(2)
--------->
AHL20(2)
<---------
AHL20(2)
<----
<-----------
GT1
<---------
ARR11(3)
<---------
AHL20(2)
--------->
ARR11(3)
--------------
------>
ARR14(2)
--------->
ARR11(3)
<---------
AHL20(2)
----------->
GT1
--------->
YAB1
<-------
-------
ARR14(2)
--------->
ARR14(2)
<---------
AHL20(2)
<---------
ICU4
<-----------
TBP
<-------
TEIL
>
DOF2
<---------
ARR14(2)
<---------
AHL20(2)
<---------
MYB46(3)
---------->
DOF2
ttttctcgatttcttctacgatcttcagattc
tctgttttttatttatttttactttatctaatggttactatcttgtatttataagaaaaggtactttc
11043800
--------->
ICU4
-----
ANAC58
<---------
AHL20(2)
-----
ANAC46
<---------
AHL20(1)
<---------
YAB1
--
AtSPL8
<---------
CCA1(2)
--------->
AHL20(1)
--------->
YAB1
->
AtSPL8
<---------
ANAC58
--------->
YAB1
-------->
HAHB4
--
AtSPL3
<---------
ANAC46
<---------
AHL20(2)
<---------
YAB1
-----
ANAC58
---------->
DOF2
--------->
AHL20(2)
--------->
YAB1
->
AtSPL3
<---------
ANAC55(2)
<---------
AHL20(2)
<---------
AHL20(2)
<---------
MYB46(3)
---
DOF2
<---------
ANAC58
--------->
AHL20(2)
----------->
GT1
<---------
YAB1
ttgtgtaatatttcgtaaagaacccataactcttgtttaattatatatttttccaaaatgcttagtaagttatataatgatactattagtattggttatg
11043900
---------->
DOF2
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
O2
<---------
AHL20(1)
<---------
WRKY38(1)
--------->
AHL20(2)
--------->
WRKY18(1)
<---------
AHL20(2)
<------
MYB83
<---------
YAB1
--------->
YAB1
<--
<------
MYB46(1)
<----------
DOF2
<---------
AHL20(2)
<--
<------
ZmHOX2a(1)
--------->
TOE2(3)
--------->
AHL20(2)
<-----
<<<<<<<<<
MYB98
--------->
ZAT18
<---------
DAG2
--------->
AHL20(2)
--------->
ARR11(3)
<---------
MYB52(1)
-------->
P
--------------->
AGL15
<---------
AHL20(2)
<---------
ARR11(3)
ttatccgttaggatggtcaagtggtctaagagcaacctcattagacaactttttatagatgtttttagtataaataaataataaaattaaagacatttca
11044000
--------->
AHL20(2)
<---------
YAB1
--------->
YAB1
<---------
YAB1
--------->
ICU4
--------->
YAB1
<---------
YAB1
<---------
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
<---------
ANAC46
<---------
AHL20(2)
<-----------
RAV1(1)
--------->
AHL20(2)
-------
DAG2
<---------
ICU4
<---------
ICU4
---------
--------
DOF2
<-------
TEIL
<---------
YAB1
--------->
AHL20(2)
------
GT1
---------->
DOF2
--------->
TOE2(3)
--------->
YAB1
<---------
ICU4
<---------
AHL20(2)
cttttgttgtgtttaaagtgtctctacagaaacacaaatctcaaactaaaaacattcataatttttttattattattatttatagttttatatttaaaga
11044100
=================
<---------
ALFIN1
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
ANAC58
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
ALFIN1
--------
xxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
TOE1(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--------->
TOE2(1)
--------->
ANAC46
----
--------->
ANAC46
--------->
ANAC58
<---
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
------>
ZmHOX2a(1)
<-------
TEIL
----------->
HVH21
->
DOF2
----------->
HVH21
<---------
AtMYB61
--------->
ALFIN1
--------->
TGA1a
<
catctacatataagtgaccaatgtggatgctctaaggccttagactcaagttttggtcctcgtaagagggtgtgggttcaaaccccacttctgacataat
11044200
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AGI:
At1g30970.1
Description:
SUF4 (SUPPRESSOR OF FRIGIDA4); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor. similar to late embryogenesis abundant protein-related / LEA protein-related [Arabidopsis thaliana] (TAIR:AT3G19430.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41935.1); contains InterPro domain Zinc finger, C2H2-like; (InterPro:IPR015880); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)
Range:
from: 11040262
to: 11043732
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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